Wall clock time and date at job start Tue Mar 31 2020 20:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36023 * 116.99857 * 2 1 4 4 C 1.35504 * 120.48301 * 359.97438 * 3 2 1 5 5 O 1.33822 * 121.01560 * 180.02562 * 4 3 2 6 6 C 1.34294 * 122.04347 * 0.02562 * 5 4 3 7 7 C 1.48049 * 119.57260 * 179.72092 * 6 5 4 8 8 O 1.21519 * 119.99849 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99985 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99729 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47646 * 34.99178 * 10 9 7 12 12 C 1.53007 * 109.46706 * 274.99322 * 10 9 7 13 13 C 1.52995 * 109.47005 * 154.99692 * 10 9 7 14 14 C 1.52997 * 109.47202 * 294.99225 * 13 10 9 15 15 C 1.52995 * 109.47202 * 179.97438 * 14 13 10 16 16 C 1.52998 * 109.47414 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47267 * 180.02562 * 16 15 14 18 18 C 1.36943 * 119.99825 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00031 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47346 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.46752 * 209.99786 * 22 20 18 25 25 H 1.48501 * 109.47067 * 329.99377 * 22 20 18 26 26 C 1.35797 * 120.85290 * 359.97438 * 6 5 4 27 27 C 1.42009 * 120.48806 * 180.02562 * 3 2 1 28 28 O 1.22124 * 120.91326 * 359.95246 * 27 3 2 29 29 H 1.08999 * 109.46898 * 60.00899 * 1 2 3 30 30 H 1.09005 * 109.46383 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47557 * 300.00138 * 1 2 3 32 32 H 1.08003 * 119.48991 * 0.04659 * 4 3 2 33 33 H 0.96993 * 119.99889 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46747 * 60.00270 * 12 10 9 35 35 H 1.08995 * 109.46786 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47376 * 300.00416 * 12 10 9 37 37 H 1.08997 * 109.47076 * 54.99710 * 13 10 9 38 38 H 1.09001 * 109.46984 * 174.99350 * 13 10 9 39 39 H 1.08997 * 109.47500 * 300.00225 * 14 13 10 40 40 H 1.09005 * 109.46532 * 60.00693 * 14 13 10 41 41 H 1.09006 * 109.47241 * 300.00276 * 15 14 13 42 42 H 1.09001 * 109.46984 * 60.00125 * 15 14 13 43 43 H 1.08997 * 109.47132 * 300.00129 * 16 15 14 44 44 H 1.09001 * 109.47206 * 59.99939 * 16 15 14 45 45 H 0.96992 * 120.00125 * 359.97438 * 17 16 15 46 46 H 0.96996 * 119.99706 * 180.02562 * 21 20 18 47 47 H 1.08001 * 120.55255 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3181 2.3546 -0.0005 5 8 1.9145 3.5526 -0.0010 6 6 3.2511 3.6831 -0.0016 7 6 3.8531 5.0356 -0.0084 8 8 5.0617 5.1627 -0.0094 9 7 3.0608 6.1259 -0.0135 10 6 3.6566 7.4643 -0.0208 11 1 4.5731 7.4509 -0.6107 12 6 3.9797 7.8865 1.4139 13 6 2.6693 8.4587 -0.6350 14 6 2.4423 8.1088 -2.1070 15 6 1.4545 9.1028 -2.7210 16 6 1.2270 8.7526 -4.1929 17 7 0.2816 9.7048 -4.7810 18 6 -0.0763 9.5896 -6.0978 19 1 0.3381 8.7966 -6.7026 20 6 -0.9725 10.4915 -6.6549 21 7 -1.3169 10.3805 -7.9204 22 14 -1.6897 11.8627 -5.6085 23 1 -0.8151 13.0598 -5.6939 24 1 -3.0471 12.2049 -6.1039 25 1 -1.7771 11.4133 -4.1958 26 6 4.0575 2.5905 -0.0011 27 6 3.4640 1.2984 -0.0005 28 8 4.1540 0.2908 -0.0002 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2396 2.2975 -0.0002 33 1 2.0962 6.0244 -0.0131 34 1 4.6831 7.1780 1.8514 35 1 4.4234 8.8820 1.4084 36 1 3.0632 7.8999 2.0038 37 1 1.7216 8.4077 -0.0990 38 1 3.0755 9.4674 -0.5598 39 1 3.3901 8.1597 -2.6430 40 1 2.0361 7.1001 -2.1822 41 1 0.5068 9.0514 -2.1850 42 1 1.8603 10.1117 -2.6458 43 1 2.1745 8.8037 -4.7292 44 1 0.8211 7.7437 -4.2678 45 1 -0.0908 10.4167 -4.2377 46 1 -1.9428 11.0109 -8.3097 47 1 5.1318 2.7011 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171803014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:32 Heat of formation + Delta-G solvation = -122.212223 kcal Electronic energy + Delta-G solvation = -28452.886515 eV Core-core repulsion = 24216.103121 eV Total energy + Delta-G solvation = -4236.783394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.32417 -41.12049 -40.26366 -39.29519 -38.19849 -37.02868 -34.85782 -33.88861 -33.42950 -32.64666 -31.59967 -29.03858 -28.72374 -26.58614 -25.69145 -25.05875 -23.61675 -22.66683 -22.09375 -21.71359 -20.26535 -19.92558 -19.61491 -19.04148 -18.00567 -17.56598 -17.17708 -16.65063 -16.60115 -16.36512 -16.24120 -15.99618 -15.88013 -15.77169 -15.47257 -15.27326 -15.14286 -14.86949 -14.65605 -14.30614 -14.13882 -13.77784 -13.57391 -13.11380 -12.94597 -12.90446 -12.48827 -12.47242 -12.45595 -12.27400 -12.07441 -11.87457 -11.76147 -11.71186 -11.45848 -11.40689 -11.11400 -10.97103 -10.96119 -10.27074 -9.44914 -9.30025 -8.03261 -5.37549 -0.88005 -0.20407 0.84502 1.38413 1.43674 1.46285 1.51219 1.78156 2.00942 2.19068 2.49317 3.15982 3.20555 3.27949 3.30797 3.51221 3.82070 3.91191 4.02164 4.11399 4.18194 4.23484 4.28968 4.35875 4.38016 4.39739 4.59733 4.67300 4.73735 4.75310 4.77247 4.90396 4.92972 5.00447 5.04936 5.08031 5.29210 5.32872 5.37034 5.51983 5.54354 5.64446 5.74932 5.94535 6.21166 6.25167 6.43807 6.81476 7.08208 7.84562 8.04692 9.18451 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.002174 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.198485 B =12877.098455 C =14632.519798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.315 6.315 3 C -0.077 4.077 4 C 0.036 3.964 5 O -0.178 6.178 6 C 0.108 3.892 7 C 0.579 3.421 8 O -0.533 6.533 9 N -0.686 5.686 10 C 0.139 3.861 11 H 0.079 0.921 12 C -0.160 4.160 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.148 3.852 17 N -0.761 5.761 18 C -0.241 4.241 19 H 0.051 0.949 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.963 3.037 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.245 1.245 26 C -0.240 4.240 27 C 0.395 3.605 28 O -0.517 6.517 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.254 0.746 33 H 0.422 0.578 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.014 0.986 44 H 0.020 0.980 45 H 0.368 0.632 46 H 0.259 0.741 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -12.249 27.364 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.230 6.230 3 C -0.124 4.124 4 C -0.030 4.030 5 O -0.079 6.079 6 C 0.056 3.944 7 C 0.362 3.638 8 O -0.411 6.411 9 N -0.338 5.338 10 C 0.036 3.964 11 H 0.097 0.903 12 C -0.218 4.218 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.154 4.154 16 C 0.022 3.978 17 N -0.407 5.407 18 C -0.372 4.372 19 H 0.069 0.931 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.789 3.211 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.169 1.169 26 C -0.262 4.262 27 C 0.286 3.714 28 O -0.405 6.405 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.269 0.731 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.033 0.967 44 H 0.039 0.961 45 H 0.201 0.799 46 H 0.067 0.933 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.201 -12.698 27.168 30.282 hybrid contribution -0.835 0.250 -0.401 0.959 sum 3.366 -12.449 26.767 29.711 Atomic orbital electron populations 1.23625 0.75581 1.06697 1.03397 1.86262 1.23868 1.23800 1.89043 1.20826 0.94351 0.87487 1.09766 1.24712 0.99616 0.79320 0.99368 1.82952 1.18883 1.31571 1.74446 1.22223 0.80878 0.95388 0.95924 1.17362 0.86163 0.82510 0.77801 1.90897 1.14227 1.85100 1.50881 1.46038 1.11201 1.05211 1.71307 1.21232 0.97360 0.79930 0.97914 0.90308 1.22149 1.02478 1.02259 0.94945 1.21872 0.99976 0.99182 0.94399 1.21485 0.98736 0.98931 0.95846 1.21665 1.00351 1.00100 0.93294 1.20873 0.91153 0.91962 0.93777 1.42755 1.54002 1.35413 1.08504 1.19061 1.20342 1.10608 0.87183 0.93132 1.25643 1.00648 1.02411 0.97345 1.69908 1.39176 1.40571 1.14012 0.85296 0.77241 0.79094 0.79460 1.20386 1.22216 1.16906 1.23046 1.03737 0.91072 1.08300 1.17574 0.87836 0.89616 0.76353 1.90823 1.66429 1.39421 1.43848 0.90344 0.86485 0.89837 0.73070 0.73959 0.93575 0.90028 0.90738 0.89099 0.88797 0.92497 0.91521 0.90913 0.91548 0.96744 0.96144 0.79885 0.93279 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.32 -5.61 10.35 -79.24 -0.82 -6.43 16 3 C -0.08 -1.33 6.72 22.57 0.15 -1.18 16 4 C 0.04 0.29 10.43 67.19 0.70 0.99 16 5 O -0.18 -1.69 9.06 2.15 0.02 -1.67 16 6 C 0.11 1.64 6.90 24.31 0.17 1.81 16 7 C 0.58 9.60 7.77 86.85 0.67 10.28 16 8 O -0.53 -12.65 15.92 -3.77 -0.06 -12.71 16 9 N -0.69 -7.63 4.53 -445.22 -2.01 -9.64 16 10 C 0.14 1.61 2.57 44.99 0.12 1.72 16 11 H 0.08 1.24 7.58 -2.39 -0.02 1.22 16 12 C -0.16 -1.57 9.48 71.98 0.68 -0.88 16 13 C -0.12 -1.19 4.75 30.59 0.15 -1.05 16 14 C -0.11 -1.87 5.10 30.59 0.16 -1.71 16 15 C -0.12 -2.72 5.33 30.59 0.16 -2.55 16 16 C 0.15 5.31 6.26 86.38 0.54 5.85 16 17 N -0.76 -34.82 5.41 -343.45 -1.86 -36.68 16 18 C -0.24 -13.83 10.47 84.03 0.88 -12.95 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 21 N -0.99 -63.28 13.97 21.65 0.30 -62.98 16 22 Si 0.96 44.26 27.74 68.60 1.90 46.16 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.24 -9.83 6.52 99.48 0.65 -9.18 16 26 C -0.24 -4.85 9.56 22.68 0.22 -4.64 16 27 C 0.39 9.63 6.82 24.19 0.16 9.80 16 28 O -0.52 -17.27 17.74 8.85 0.16 -17.11 16 29 H 0.08 0.13 7.67 -2.39 -0.02 0.12 16 30 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.08 0.02 7.67 -2.39 -0.02 0.00 16 32 H 0.25 -0.41 6.22 -2.91 -0.02 -0.43 16 33 H 0.42 2.64 8.00 -92.71 -0.74 1.90 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.06 7.75 -2.38 -0.02 1.05 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.37 15.61 5.53 -92.71 -0.51 15.10 16 46 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 47 H 0.17 3.65 7.56 -2.91 -0.02 3.63 16 Total: -1.00 -85.99 396.83 3.66 -82.34 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.31 Total: 15.72 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.34 Total: 3.01 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.57 Total: -109.30 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.70 Total: -37.92 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -85.99 3.66 -82.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171803014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.874 kcal (2) G-P(sol) polarization free energy of solvation -85.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds