Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36024 * 116.99956 * 2 1 4 4 C 1.35488 * 120.48254 * 0.02562 * 3 2 1 5 5 O 1.33836 * 121.01318 * 179.71898 * 4 3 2 6 6 C 1.34292 * 122.04094 * 0.52809 * 5 4 3 7 7 C 1.48050 * 119.57390 * 179.74883 * 6 5 4 8 8 O 1.21509 * 120.00353 * 179.72828 * 7 6 5 9 9 N 1.34781 * 119.99976 * 359.72519 * 7 6 5 10 10 C 1.46501 * 120.00231 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46643 * 324.99984 * 10 9 7 12 12 C 1.53002 * 109.47013 * 84.99743 * 10 9 7 13 13 C 1.52996 * 109.47049 * 204.99988 * 10 9 7 14 14 C 1.52997 * 109.47131 * 65.00110 * 13 10 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47294 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00627 * 179.97438 * 17 16 15 19 19 H 1.08012 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00809 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00541 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47128 * 89.99754 * 22 20 18 24 24 H 1.48501 * 109.47310 * 209.99768 * 22 20 18 25 25 H 1.48501 * 109.46818 * 329.99523 * 22 20 18 26 26 C 1.35797 * 120.85172 * 359.46814 * 6 5 4 27 27 C 1.42010 * 120.48505 * 179.97438 * 3 2 1 28 28 O 1.22125 * 120.91749 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.46912 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47260 * 299.99830 * 1 2 3 32 32 H 1.07997 * 119.49839 * 359.97212 * 4 3 2 33 33 H 0.97003 * 120.00102 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47133 * 300.00613 * 12 10 9 35 35 H 1.09001 * 109.46843 * 60.00279 * 12 10 9 36 36 H 1.08998 * 109.46646 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.47452 * 305.00111 * 13 10 9 38 38 H 1.09001 * 109.46997 * 184.99684 * 13 10 9 39 39 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 40 40 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 43 43 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 44 44 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 45 45 H 0.97006 * 119.99755 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00324 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.55238 * 180.23160 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9147 3.5525 0.0062 6 6 3.2513 3.6829 0.0010 7 6 3.8535 5.0354 0.0021 8 8 5.0619 5.1625 0.0024 9 7 3.0612 6.1258 0.0025 10 6 3.6571 7.4642 0.0030 11 1 4.5739 7.4535 0.5924 12 6 3.9793 7.8795 -1.4339 13 6 2.6702 8.4616 0.6130 14 6 2.4441 8.1187 2.0868 15 6 1.4576 9.1165 2.6971 16 6 1.2320 8.7740 4.1711 17 7 0.2880 9.7297 4.7556 18 6 -0.0689 9.6211 6.0731 19 1 0.3452 8.8304 6.6813 20 6 -0.9638 10.5262 6.6268 21 7 -1.4689 11.4894 5.8854 22 14 -1.4502 10.3784 8.4243 23 1 -0.5134 11.1742 9.2576 24 1 -2.8321 10.8902 8.6069 25 1 -1.3916 8.9531 8.8372 26 6 4.0576 2.5903 0.0006 27 6 3.4640 1.2983 0.0005 28 8 4.1540 0.2907 0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2397 2.2976 0.0005 33 1 2.0965 6.0245 0.0018 34 1 4.6822 7.1689 -1.8685 35 1 3.0624 7.8902 -2.0233 36 1 4.4222 8.8755 -1.4336 37 1 1.7221 8.4081 0.0780 38 1 3.0764 9.4699 0.5328 39 1 3.3922 8.1722 2.6220 40 1 2.0380 7.1104 2.1672 41 1 1.8642 10.1247 2.6169 42 1 0.5095 9.0634 2.1621 43 1 0.8257 7.7658 4.2518 44 1 2.1804 8.8273 4.7058 45 1 -0.0842 10.4396 4.2092 46 1 -2.0939 12.1223 6.2724 47 1 5.1320 2.7008 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171803015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = -99.555231 kcal Electronic energy + Delta-G solvation = -28393.975315 eV Core-core repulsion = 24158.174401 eV Total energy + Delta-G solvation = -4235.800913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62685 -40.38888 -39.58700 -38.56353 -37.28465 -35.40873 -33.45705 -33.09132 -32.26518 -31.31940 -30.31699 -28.37027 -27.53956 -25.82303 -24.42966 -24.24654 -22.53283 -21.65994 -21.02229 -20.73867 -19.61956 -19.27618 -18.38422 -17.34492 -17.04406 -16.83692 -16.46031 -16.06564 -15.63964 -15.33465 -15.21399 -15.15815 -14.90096 -14.71031 -14.42499 -14.37119 -14.06139 -13.64062 -13.24246 -13.16671 -13.06712 -13.02393 -12.52768 -12.09909 -12.03873 -11.86972 -11.59994 -11.38695 -11.09136 -10.89631 -10.81443 -10.77976 -10.48728 -10.37171 -10.29360 -10.25764 -10.03117 -9.71955 -9.54722 -8.88441 -8.78651 -6.93208 -5.78099 -3.06623 -0.11226 0.45060 1.53716 2.22152 2.44048 2.54765 2.94360 3.42220 3.47257 3.48917 3.70876 3.87320 3.93334 4.38503 4.42558 4.55944 4.60011 4.62956 4.71901 4.76811 4.84388 4.91728 4.97546 5.13561 5.25136 5.32386 5.45392 5.46075 5.52729 5.58084 5.65956 5.76328 5.83720 5.96606 5.99229 6.21548 6.23442 6.32634 6.33644 6.40885 6.45222 6.85059 6.88921 6.91094 7.16672 7.47630 7.68445 8.41361 9.52116 10.11002 10.45430 11.44983 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.002142 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.777424 B =13070.650115 C =15075.709496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.282 6.282 3 C -0.050 4.050 4 C -0.003 4.003 5 O -0.195 6.195 6 C 0.090 3.910 7 C 0.578 3.422 8 O -0.500 6.500 9 N -0.700 5.700 10 C 0.138 3.862 11 H 0.095 0.905 12 C -0.165 4.165 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.225 4.225 27 C 0.407 3.593 28 O -0.455 6.455 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -16.690 -19.898 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.097 4.097 4 C -0.069 4.069 5 O -0.098 6.098 6 C 0.038 3.962 7 C 0.360 3.640 8 O -0.376 6.376 9 N -0.351 5.351 10 C 0.034 3.966 11 H 0.113 0.887 12 C -0.223 4.223 13 C -0.165 4.165 14 C -0.154 4.154 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.247 4.247 27 C 0.293 3.707 28 O -0.338 6.338 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.705 -17.130 -19.719 26.967 hybrid contribution -1.332 0.092 0.880 1.599 sum 5.374 -17.038 -18.838 25.963 Atomic orbital electron populations 1.23268 0.78158 1.05286 1.01512 1.86299 1.21137 1.23546 1.88574 1.21028 0.95336 0.86145 1.07235 1.23946 0.98279 0.80935 1.03765 1.82901 1.19986 1.31036 1.75852 1.22444 0.80370 0.96175 0.97190 1.17344 0.86499 0.82075 0.78043 1.90898 1.12710 1.84682 1.49313 1.46095 1.10717 1.05721 1.72597 1.21254 0.97898 0.80053 0.97368 0.88669 1.22194 1.02097 1.02211 0.95802 1.21961 0.99038 0.98894 0.96648 1.21550 1.00143 0.99630 0.94120 1.21722 0.98662 0.98839 0.97111 1.20647 0.93007 0.93184 0.90707 1.42386 1.51886 1.33860 1.09771 1.19248 1.20413 1.10360 0.86996 0.91243 1.24750 1.00168 0.98052 0.98189 1.69661 1.35034 1.18468 1.35211 0.86180 0.77600 0.77427 0.84948 1.21687 1.21745 1.20763 1.23184 1.03754 0.90974 1.06787 1.17101 0.86310 0.89827 0.77434 1.90860 1.65096 1.37934 1.39887 0.92232 0.87274 0.92051 0.77843 0.75393 0.92082 0.92188 0.90990 0.91065 0.89735 0.91815 0.92128 0.91971 0.92080 0.96660 0.96565 0.78346 0.93527 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 101.05 0.99 1.04 16 2 O -0.28 -2.59 10.35 -35.06 -0.36 -2.95 16 3 C -0.05 -0.45 6.72 -39.12 -0.26 -0.71 16 4 C 0.00 -0.02 10.43 29.75 0.31 0.29 16 5 O -0.20 -1.30 9.06 6.97 0.06 -1.23 16 6 C 0.09 0.76 6.90 -36.43 -0.25 0.50 16 7 C 0.58 5.35 7.77 -12.23 -0.10 5.26 16 8 O -0.50 -6.08 15.92 5.36 0.09 -5.99 16 9 N -0.70 -5.19 4.52 -54.69 -0.25 -5.44 16 10 C 0.14 1.06 2.57 -67.93 -0.17 0.89 16 11 H 0.10 0.87 7.58 -51.93 -0.39 0.48 16 12 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 13 C -0.13 -1.02 4.75 -26.73 -0.13 -1.15 16 14 C -0.12 -1.26 5.10 -26.73 -0.14 -1.40 16 15 C -0.13 -1.85 5.33 -26.73 -0.14 -1.99 16 16 C 0.15 3.01 6.26 -4.05 -0.03 2.99 16 17 N -0.74 -18.74 5.60 -59.91 -0.34 -19.08 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.23 -2.21 9.56 -38.94 -0.37 -2.58 16 27 C 0.41 4.70 6.82 -36.63 -0.25 4.45 16 28 O -0.46 -6.90 17.74 -10.43 -0.19 -7.09 16 29 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 32 H 0.21 0.44 6.22 -52.49 -0.33 0.11 16 33 H 0.41 2.34 8.00 -40.82 -0.33 2.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.18 7.67 -40.82 -0.31 9.86 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.18 1.74 7.57 -52.48 -0.40 1.34 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -36.22 399.94 -6.83 -43.06 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.15 Total: 3.53 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.43 Total: -0.64 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.14 Total: -52.09 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.40 Total: -17.27 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.22 -6.83 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171803015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.500 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds