Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36024 * 116.99956 * 2 1 4 4 C 1.35488 * 120.48254 * 0.02562 * 3 2 1 5 5 O 1.33836 * 121.01318 * 179.71898 * 4 3 2 6 6 C 1.34292 * 122.04094 * 0.52809 * 5 4 3 7 7 C 1.48050 * 119.57390 * 179.74883 * 6 5 4 8 8 O 1.21509 * 120.00353 * 179.72828 * 7 6 5 9 9 N 1.34781 * 119.99976 * 359.72519 * 7 6 5 10 10 C 1.46501 * 120.00231 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46643 * 324.99984 * 10 9 7 12 12 C 1.53002 * 109.47013 * 84.99743 * 10 9 7 13 13 C 1.52996 * 109.47049 * 204.99988 * 10 9 7 14 14 C 1.52997 * 109.47131 * 65.00110 * 13 10 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47294 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00627 * 179.97438 * 17 16 15 19 19 H 1.08012 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00809 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00541 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47128 * 89.99754 * 22 20 18 24 24 H 1.48501 * 109.47310 * 209.99768 * 22 20 18 25 25 H 1.48501 * 109.46818 * 329.99523 * 22 20 18 26 26 C 1.35797 * 120.85172 * 359.46814 * 6 5 4 27 27 C 1.42010 * 120.48505 * 179.97438 * 3 2 1 28 28 O 1.22125 * 120.91749 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.46912 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47260 * 299.99830 * 1 2 3 32 32 H 1.07997 * 119.49839 * 359.97212 * 4 3 2 33 33 H 0.97003 * 120.00102 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47133 * 300.00613 * 12 10 9 35 35 H 1.09001 * 109.46843 * 60.00279 * 12 10 9 36 36 H 1.08998 * 109.46646 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.47452 * 305.00111 * 13 10 9 38 38 H 1.09001 * 109.46997 * 184.99684 * 13 10 9 39 39 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 40 40 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 43 43 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 44 44 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 45 45 H 0.97006 * 119.99755 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00324 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.55238 * 180.23160 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9147 3.5525 0.0062 6 6 3.2513 3.6829 0.0010 7 6 3.8535 5.0354 0.0021 8 8 5.0619 5.1625 0.0024 9 7 3.0612 6.1258 0.0025 10 6 3.6571 7.4642 0.0030 11 1 4.5739 7.4535 0.5924 12 6 3.9793 7.8795 -1.4339 13 6 2.6702 8.4616 0.6130 14 6 2.4441 8.1187 2.0868 15 6 1.4576 9.1165 2.6971 16 6 1.2320 8.7740 4.1711 17 7 0.2880 9.7297 4.7556 18 6 -0.0689 9.6211 6.0731 19 1 0.3452 8.8304 6.6813 20 6 -0.9638 10.5262 6.6268 21 7 -1.4689 11.4894 5.8854 22 14 -1.4502 10.3784 8.4243 23 1 -0.5134 11.1742 9.2576 24 1 -2.8321 10.8902 8.6069 25 1 -1.3916 8.9531 8.8372 26 6 4.0576 2.5903 0.0006 27 6 3.4640 1.2983 0.0005 28 8 4.1540 0.2907 0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2397 2.2976 0.0005 33 1 2.0965 6.0245 0.0018 34 1 4.6822 7.1689 -1.8685 35 1 3.0624 7.8902 -2.0233 36 1 4.4222 8.8755 -1.4336 37 1 1.7221 8.4081 0.0780 38 1 3.0764 9.4699 0.5328 39 1 3.3922 8.1722 2.6220 40 1 2.0380 7.1104 2.1672 41 1 1.8642 10.1247 2.6169 42 1 0.5095 9.0634 2.1621 43 1 0.8257 7.7658 4.2518 44 1 2.1804 8.8273 4.7058 45 1 -0.0842 10.4396 4.2092 46 1 -2.0939 12.1223 6.2724 47 1 5.1320 2.7008 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171803015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = -125.015427 kcal Electronic energy + Delta-G solvation = -28395.079352 eV Core-core repulsion = 24158.174401 eV Total energy + Delta-G solvation = -4236.904950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32080 -41.11778 -40.26009 -39.29163 -38.16237 -36.90418 -34.84982 -33.88315 -33.29071 -32.45182 -31.46314 -28.80144 -28.72052 -26.58081 -25.84670 -25.05467 -23.79557 -22.65500 -21.99128 -21.71112 -20.25758 -19.92210 -19.14686 -19.01485 -18.00127 -17.56320 -17.17330 -16.68857 -16.62073 -16.35035 -16.21541 -15.98445 -15.85950 -15.50571 -15.36844 -15.26898 -15.25641 -15.12771 -14.56880 -14.18237 -14.06334 -13.77281 -13.27180 -13.03960 -12.88549 -12.82774 -12.48517 -12.46900 -12.43470 -12.30143 -12.14651 -11.87381 -11.80005 -11.70500 -11.41856 -11.38961 -11.11056 -10.96593 -10.92948 -10.26770 -9.44638 -9.00240 -7.96227 -5.25043 -0.87590 -0.20038 0.85040 1.46754 1.47283 1.49009 1.57462 1.78394 2.01179 2.19446 2.55719 3.16321 3.20891 3.31105 3.37320 3.61906 3.82521 4.02768 4.08668 4.15468 4.19033 4.24198 4.29389 4.37482 4.38274 4.42375 4.62674 4.68411 4.74621 4.76137 4.77805 4.90674 4.94854 5.01083 5.05517 5.08549 5.30934 5.33564 5.37378 5.47327 5.53139 5.56860 5.64979 5.94750 6.25527 6.27184 6.44066 6.81502 7.32905 8.10309 8.33048 9.27361 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.002142 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.777424 B =13070.650115 C =15075.709496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.315 6.315 3 C -0.077 4.077 4 C 0.035 3.965 5 O -0.178 6.178 6 C 0.108 3.892 7 C 0.579 3.421 8 O -0.533 6.533 9 N -0.686 5.686 10 C 0.141 3.859 11 H 0.080 0.920 12 C -0.160 4.160 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.113 4.113 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.270 1.270 26 C -0.239 4.239 27 C 0.395 3.605 28 O -0.517 6.517 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.253 0.747 33 H 0.422 0.578 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.018 0.982 44 H 0.011 0.989 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -16.227 -20.377 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.229 6.229 3 C -0.124 4.124 4 C -0.030 4.030 5 O -0.079 6.079 6 C 0.056 3.944 7 C 0.362 3.638 8 O -0.411 6.411 9 N -0.338 5.338 10 C 0.037 3.963 11 H 0.098 0.902 12 C -0.218 4.218 13 C -0.155 4.155 14 C -0.147 4.147 15 C -0.150 4.150 16 C 0.020 3.980 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.194 1.194 26 C -0.261 4.261 27 C 0.287 3.713 28 O -0.405 6.405 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.269 0.731 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.821 -16.662 -20.209 26.632 hybrid contribution -0.829 0.003 1.015 1.310 sum 3.992 -16.659 -19.194 25.727 Atomic orbital electron populations 1.23622 0.75589 1.06697 1.03392 1.86261 1.23858 1.23781 1.89046 1.20818 0.94351 0.87468 1.09757 1.24711 0.99619 0.79324 0.99380 1.82959 1.18906 1.31600 1.74444 1.22215 0.80875 0.95362 0.95934 1.17361 0.86160 0.82497 0.77799 1.90893 1.14192 1.85094 1.50887 1.46044 1.11212 1.05211 1.71306 1.21209 0.97271 0.79898 0.97906 0.90182 1.22149 1.02487 1.02291 0.94912 1.21868 0.99944 0.99151 0.94532 1.21471 0.98633 0.98802 0.95763 1.21600 0.99938 0.99663 0.93841 1.20880 0.91325 0.92075 0.93678 1.42637 1.52777 1.34669 1.09114 1.19642 1.19934 1.10066 0.88388 0.90937 1.25583 1.00723 0.98101 1.02439 1.69808 1.35872 1.19364 1.36933 0.85140 0.76839 0.77871 0.79924 1.21447 1.21912 1.19438 1.23046 1.03735 0.91048 1.08283 1.17563 0.87819 0.89604 0.76351 1.90822 1.66418 1.39406 1.43847 0.89897 0.86460 0.90320 0.73103 0.73993 0.93400 0.90816 0.90092 0.89335 0.89068 0.92431 0.91395 0.92450 0.91678 0.96353 0.97051 0.79380 0.93905 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -5.60 10.35 -79.25 -0.82 -6.42 16 3 C -0.08 -1.33 6.72 22.57 0.15 -1.18 16 4 C 0.04 0.30 10.43 67.18 0.70 1.00 16 5 O -0.18 -1.78 9.06 2.04 0.02 -1.76 16 6 C 0.11 1.68 6.90 24.31 0.17 1.85 16 7 C 0.58 9.95 7.77 86.85 0.67 10.62 16 8 O -0.53 -12.87 15.92 -3.74 -0.06 -12.93 16 9 N -0.69 -8.37 4.52 -445.23 -2.01 -10.38 16 10 C 0.14 1.83 2.57 44.99 0.12 1.95 16 11 H 0.08 1.35 7.58 -2.39 -0.02 1.33 16 12 C -0.16 -1.79 9.48 71.98 0.68 -1.10 16 13 C -0.12 -1.49 4.75 30.59 0.15 -1.34 16 14 C -0.11 -2.07 5.10 30.60 0.16 -1.91 16 15 C -0.11 -3.09 5.33 30.60 0.16 -2.93 16 16 C 0.15 5.63 6.26 86.38 0.54 6.17 16 17 N -0.75 -37.88 5.60 -343.46 -1.92 -39.81 16 18 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 19 H 0.07 3.92 7.83 -2.90 -0.02 3.90 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 21 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 22 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.24 -4.88 9.56 22.68 0.22 -4.66 16 27 C 0.40 9.66 6.82 24.18 0.16 9.82 16 28 O -0.52 -17.23 17.74 8.85 0.16 -17.08 16 29 H 0.08 0.04 7.67 -2.39 -0.02 0.02 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.13 7.66 -2.39 -0.02 0.11 16 32 H 0.25 -0.33 6.22 -2.91 -0.02 -0.35 16 33 H 0.42 3.18 8.00 -92.71 -0.74 2.43 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.20 7.75 -2.39 -0.02 1.18 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.37 19.89 7.67 -92.70 -0.71 19.18 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.17 3.67 7.57 -2.91 -0.02 3.65 16 Total: -1.00 -81.58 399.94 3.51 -78.07 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.45 Total: 18.64 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.30 Total: 2.43 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.66 Total: -108.67 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.70 Total: -38.19 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -81.58 3.51 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171803015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.947 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds