Wall clock time and date at job start Tue Mar 31 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46509 * 109.46723 * 2 1 4 4 C 1.34948 * 126.03828 * 124.97273 * 3 2 1 5 5 C 1.35310 * 107.74678 * 179.74843 * 4 3 2 6 6 C 1.39873 * 107.91935 * 0.39534 * 5 4 3 7 7 C 1.50703 * 125.89863 * 179.86472 * 6 5 4 8 8 N 1.46896 * 109.46950 * 94.71639 * 7 6 5 9 9 C 1.46902 * 110.99663 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.78364 * 323.21210 * 9 8 7 11 11 C 1.55161 * 110.72022 * 199.97755 * 9 8 7 12 12 C 1.55129 * 101.48250 * 205.96959 * 11 9 8 13 13 N 1.47419 * 104.72783 * 37.29418 * 12 11 9 14 14 C 1.34781 * 125.65408 * 155.81707 * 13 12 11 15 15 O 1.21274 * 120.00344 * 179.69223 * 14 13 12 16 16 C 1.50701 * 119.99423 * 359.69019 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47018 * 108.70076 * 335.54985 * 13 12 11 27 27 N 1.30842 * 108.20325 * 359.59918 * 6 5 4 28 28 H 1.08993 * 109.47614 * 299.99963 * 1 2 3 29 29 H 1.09007 * 109.47230 * 60.00408 * 1 2 3 30 30 H 1.09005 * 109.46789 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47614 * 240.00037 * 2 1 3 32 32 H 1.09001 * 109.46916 * 119.99263 * 2 1 3 33 33 H 1.07998 * 126.12625 * 0.02562 * 4 3 2 34 34 H 1.08000 * 126.04297 * 180.27837 * 5 4 3 35 35 H 1.09000 * 109.47358 * 334.71360 * 7 6 5 36 36 H 1.09006 * 109.46673 * 214.71851 * 7 6 5 37 37 H 1.00902 * 110.99971 * 303.94548 * 8 7 6 38 38 H 1.09005 * 110.99938 * 324.20672 * 11 9 8 39 39 H 1.08992 * 111.00462 * 88.02187 * 11 9 8 40 40 H 1.09002 * 110.49830 * 278.44878 * 12 11 9 41 41 H 1.09008 * 110.33977 * 156.06007 * 12 11 9 42 42 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 43 43 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 44 44 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.88070 * 120.70531 * 26 13 12 46 46 H 1.08996 * 109.88909 * 241.87114 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8726 1.9214 0.8942 5 6 3.0756 3.2123 0.5429 6 6 2.3124 3.4725 -0.6000 7 6 2.2359 4.7882 -1.3308 8 7 3.2004 4.7896 -2.4388 9 6 3.1543 6.0599 -3.1752 10 1 2.1323 6.4337 -3.2379 11 6 3.7665 5.8959 -4.5914 12 6 4.2380 7.3427 -4.8934 13 7 4.7337 7.8526 -3.6021 14 6 5.6336 8.8430 -3.4418 15 8 5.9659 9.1858 -2.3270 16 6 6.2270 9.5243 -4.6479 17 16 7.3929 10.7991 -4.1080 18 6 7.9189 11.4152 -5.6728 19 1 7.5179 10.9925 -6.5821 20 6 8.8487 12.4438 -5.7367 21 7 9.3379 12.9587 -4.6284 22 14 9.4069 13.0964 -7.3956 23 1 10.5926 12.3299 -7.8556 24 1 8.3072 12.9462 -8.3822 25 1 9.7646 14.5320 -7.2678 26 6 4.0789 7.1061 -2.5179 27 7 1.6807 2.3747 -0.9283 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.3182 1.4131 1.7364 34 1 3.7127 3.9177 1.0557 35 1 2.4715 5.6002 -0.6429 36 1 1.2292 4.9267 -1.7251 37 1 4.1336 4.5987 -2.1061 38 1 4.6075 5.2027 -4.5756 39 1 3.0114 5.5746 -5.3087 40 1 3.4044 7.9499 -5.2463 41 1 5.0406 7.3335 -5.6310 42 1 5.4310 9.9841 -5.2338 43 1 6.7503 8.7894 -5.2596 44 1 9.9879 13.6772 -4.6732 45 1 4.8297 6.6052 -1.9067 46 1 3.4903 7.7862 -1.9023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181107387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:00 Heat of formation + Delta-G solvation = 48.902854 kcal Electronic energy + Delta-G solvation = -25508.498478 eV Core-core repulsion = 21754.180812 eV Total energy + Delta-G solvation = -3754.317666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49241 -39.87062 -37.73230 -35.70078 -34.39968 -32.41518 -31.53457 -30.43701 -29.67097 -29.55688 -27.78155 -25.72870 -25.36876 -23.47084 -22.97575 -21.44388 -21.08986 -19.90082 -19.30634 -17.72906 -17.40095 -16.68095 -16.57423 -15.90388 -15.61391 -14.99644 -14.89644 -14.78996 -14.67714 -14.10303 -13.99446 -13.83071 -13.77744 -13.67384 -13.24939 -12.80776 -12.72424 -12.57899 -12.48610 -12.39577 -12.21704 -11.88699 -11.76757 -11.73548 -11.56147 -11.05316 -11.00620 -10.97046 -10.80697 -10.74097 -9.80486 -9.62065 -9.41702 -9.05242 -8.91386 -8.73859 -8.46001 -8.21722 -6.48814 -6.20252 -3.90866 1.57891 2.13760 2.42619 2.92802 3.08679 3.23551 3.27296 3.31643 3.62429 3.94122 4.03109 4.21499 4.34049 4.41711 4.45390 4.48375 4.55201 4.68569 4.84377 4.92633 5.07292 5.10594 5.13308 5.14933 5.17024 5.23123 5.28994 5.39445 5.48820 5.51616 5.60652 5.62243 5.64745 5.68102 5.77514 5.83442 5.90127 5.99332 6.15893 6.32831 6.42779 6.67336 6.69370 7.01520 7.45595 7.60935 7.68877 8.36682 8.57925 9.24989 10.87196 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001638 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.472654 B =17090.403240 C =17513.987123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.374 5.374 4 C 0.051 3.949 5 C -0.267 4.267 6 C 0.074 3.926 7 C 0.138 3.862 8 N -0.668 5.668 9 C 0.078 3.922 10 H 0.097 0.903 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.624 5.624 14 C 0.547 3.453 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.272 1.272 25 H -0.282 1.282 26 C 0.082 3.918 27 N -0.272 5.272 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.348 0.652 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.214 -26.449 7.649 33.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.157 5.157 4 C -0.095 4.095 5 C -0.297 4.297 6 C -0.093 4.093 7 C 0.007 3.993 8 N -0.299 5.299 9 C -0.033 4.033 10 H 0.115 0.885 11 C -0.157 4.157 12 C -0.025 4.025 13 N -0.362 5.362 14 C 0.336 3.664 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.208 1.208 26 C -0.043 4.043 27 N -0.095 5.095 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.167 0.833 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.823 -26.789 8.173 33.745 hybrid contribution 1.067 0.869 -0.997 1.699 sum -17.755 -25.920 7.176 32.227 Atomic orbital electron populations 1.22055 0.93759 1.02860 1.03652 1.21682 0.96134 0.77529 1.03717 1.48775 1.35711 1.10134 1.21097 1.22532 0.95645 0.94981 0.96332 1.21456 1.09426 0.96872 1.01948 1.22109 0.96817 0.94848 0.95529 1.20252 0.97974 0.89896 0.91143 1.60571 1.11080 1.31741 1.26547 1.22685 0.99284 0.87328 0.94024 0.88493 1.22813 1.01355 0.95756 0.95782 1.22405 0.99480 0.93998 0.86620 1.48425 1.43612 1.36840 1.07300 1.20061 0.77391 0.77951 0.91010 1.90703 1.59423 1.62689 1.26301 1.23505 1.04039 1.03585 0.98542 1.85398 1.48431 1.37965 1.11696 1.22864 1.29710 1.23174 0.92575 0.90913 1.24992 0.95317 0.95547 0.97695 1.70023 1.28428 1.25053 1.26784 0.86165 0.78966 0.78088 0.82269 1.20270 1.19683 1.20752 1.22670 0.95808 0.94792 0.91067 1.77318 1.23405 0.96408 1.12341 0.92146 0.90970 0.90721 0.89754 0.88744 0.81089 0.83565 0.92646 0.89396 0.83277 0.90085 0.89486 0.91215 0.90092 0.89263 0.89272 0.92196 0.91656 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.10 37.16 0.38 -0.38 16 2 C 0.13 0.62 7.23 -4.04 -0.03 0.59 16 3 N -0.37 -3.10 3.68 -61.36 -0.23 -3.33 16 4 C 0.05 0.37 11.45 -17.23 -0.20 0.17 16 5 C -0.27 -2.32 10.74 -40.01 -0.43 -2.75 16 6 C 0.07 0.73 6.73 -82.40 -0.55 0.18 16 7 C 0.14 1.18 6.10 -4.98 -0.03 1.15 16 8 N -0.67 -5.98 6.35 -106.05 -0.67 -6.65 16 9 C 0.08 0.70 3.23 -65.87 -0.21 0.48 16 10 H 0.10 0.79 7.90 -51.93 -0.41 0.38 16 11 C -0.12 -1.04 6.78 -24.46 -0.17 -1.20 16 12 C 0.10 1.07 6.70 -2.41 -0.02 1.05 16 13 N -0.62 -9.16 3.32 -170.39 -0.57 -9.72 16 14 C 0.55 10.83 7.87 -10.98 -0.09 10.74 16 15 O -0.52 -12.28 16.19 5.56 0.09 -12.19 16 16 C -0.15 -3.05 5.16 36.01 0.19 -2.87 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.08 0.99 6.52 -3.07 -0.02 0.97 16 27 N -0.27 -2.97 12.42 33.67 0.42 -2.55 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.19 8.07 -51.93 -0.42 -0.22 16 33 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.35 3.19 8.15 -39.29 -0.32 2.87 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.87 7.48 -51.92 -0.39 0.48 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.09 1.73 7.85 -51.91 -0.41 1.32 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 0.83 7.57 -51.93 -0.39 0.43 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -36.98 398.97 -9.81 -46.79 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.38 Total: -0.43 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.98 Total: -4.92 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.31 Total: -47.84 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.98 -9.81 -46.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.692 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds