Wall clock time and date at job start Tue Mar 31 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46509 * 109.46723 * 2 1 4 4 C 1.34948 * 126.03828 * 124.97273 * 3 2 1 5 5 C 1.35310 * 107.74678 * 179.74843 * 4 3 2 6 6 C 1.39873 * 107.91935 * 0.39534 * 5 4 3 7 7 C 1.50703 * 125.89863 * 179.86472 * 6 5 4 8 8 N 1.46896 * 109.46950 * 94.71639 * 7 6 5 9 9 C 1.46902 * 110.99663 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.78364 * 323.21210 * 9 8 7 11 11 C 1.55161 * 110.72022 * 199.97755 * 9 8 7 12 12 C 1.55129 * 101.48250 * 205.96959 * 11 9 8 13 13 N 1.47419 * 104.72783 * 37.29418 * 12 11 9 14 14 C 1.34781 * 125.65408 * 155.81707 * 13 12 11 15 15 O 1.21274 * 120.00344 * 179.69223 * 14 13 12 16 16 C 1.50701 * 119.99423 * 359.69019 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47018 * 108.70076 * 335.54985 * 13 12 11 27 27 N 1.30842 * 108.20325 * 359.59918 * 6 5 4 28 28 H 1.08993 * 109.47614 * 299.99963 * 1 2 3 29 29 H 1.09007 * 109.47230 * 60.00408 * 1 2 3 30 30 H 1.09005 * 109.46789 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47614 * 240.00037 * 2 1 3 32 32 H 1.09001 * 109.46916 * 119.99263 * 2 1 3 33 33 H 1.07998 * 126.12625 * 0.02562 * 4 3 2 34 34 H 1.08000 * 126.04297 * 180.27837 * 5 4 3 35 35 H 1.09000 * 109.47358 * 334.71360 * 7 6 5 36 36 H 1.09006 * 109.46673 * 214.71851 * 7 6 5 37 37 H 1.00902 * 110.99971 * 303.94548 * 8 7 6 38 38 H 1.09005 * 110.99938 * 324.20672 * 11 9 8 39 39 H 1.08992 * 111.00462 * 88.02187 * 11 9 8 40 40 H 1.09002 * 110.49830 * 278.44878 * 12 11 9 41 41 H 1.09008 * 110.33977 * 156.06007 * 12 11 9 42 42 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 43 43 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 44 44 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.88070 * 120.70531 * 26 13 12 46 46 H 1.08996 * 109.88909 * 241.87114 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8726 1.9214 0.8942 5 6 3.0756 3.2123 0.5429 6 6 2.3124 3.4725 -0.6000 7 6 2.2359 4.7882 -1.3308 8 7 3.2004 4.7896 -2.4388 9 6 3.1543 6.0599 -3.1752 10 1 2.1323 6.4337 -3.2379 11 6 3.7665 5.8959 -4.5914 12 6 4.2380 7.3427 -4.8934 13 7 4.7337 7.8526 -3.6021 14 6 5.6336 8.8430 -3.4418 15 8 5.9659 9.1858 -2.3270 16 6 6.2270 9.5243 -4.6479 17 16 7.3929 10.7991 -4.1080 18 6 7.9189 11.4152 -5.6728 19 1 7.5179 10.9925 -6.5821 20 6 8.8487 12.4438 -5.7367 21 7 9.3379 12.9587 -4.6284 22 14 9.4069 13.0964 -7.3956 23 1 10.5926 12.3299 -7.8556 24 1 8.3072 12.9462 -8.3822 25 1 9.7646 14.5320 -7.2678 26 6 4.0789 7.1061 -2.5179 27 7 1.6807 2.3747 -0.9283 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.3182 1.4131 1.7364 34 1 3.7127 3.9177 1.0557 35 1 2.4715 5.6002 -0.6429 36 1 1.2292 4.9267 -1.7251 37 1 4.1336 4.5987 -2.1061 38 1 4.6075 5.2027 -4.5756 39 1 3.0114 5.5746 -5.3087 40 1 3.4044 7.9499 -5.2463 41 1 5.0406 7.3335 -5.6310 42 1 5.4310 9.9841 -5.2338 43 1 6.7503 8.7894 -5.2596 44 1 9.9879 13.6772 -4.6732 45 1 4.8297 6.6052 -1.9067 46 1 3.4903 7.7862 -1.9023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181107387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:59 Heat of formation + Delta-G solvation = 22.713271 kcal Electronic energy + Delta-G solvation = -25509.634143 eV Core-core repulsion = 21754.180812 eV Total energy + Delta-G solvation = -3755.453331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09307 -41.09025 -38.94635 -36.51385 -35.03482 -34.58740 -32.50877 -31.23638 -30.83830 -30.29261 -28.76500 -27.66655 -26.39985 -24.27580 -23.67877 -22.00523 -21.89144 -20.73818 -20.53765 -19.57660 -18.12773 -17.94190 -17.60171 -16.88555 -16.79309 -16.42832 -16.23889 -15.90823 -15.65213 -15.25667 -15.00118 -14.69252 -14.49862 -14.47514 -14.37673 -14.19128 -13.71705 -13.60226 -13.29015 -13.21044 -13.13353 -12.95507 -12.89115 -12.88121 -12.61916 -12.52939 -12.38348 -12.19191 -11.79555 -11.67283 -11.43283 -11.14272 -11.01256 -10.29148 -10.25062 -9.77224 -9.54182 -9.39672 -8.68654 -8.34732 -6.13744 0.97854 1.23491 1.43082 1.44893 1.54251 1.56467 1.65369 1.78352 2.08386 2.27261 2.99477 3.15485 3.28639 3.49825 3.56243 3.65055 3.88469 3.99207 4.01832 4.08868 4.12906 4.22528 4.27370 4.34218 4.37697 4.38652 4.44213 4.60032 4.63235 4.68424 4.77993 4.81886 4.82498 4.87523 4.95799 5.09473 5.15106 5.20741 5.24832 5.33478 5.41617 5.70156 5.95290 6.19684 6.20066 6.26567 6.36923 6.82060 7.06281 7.09300 8.74631 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001638 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.472654 B =17090.403240 C =17513.987123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.058 3.942 5 C -0.291 4.291 6 C 0.061 3.939 7 C 0.140 3.860 8 N -0.666 5.666 9 C 0.092 3.908 10 H 0.113 0.887 11 C -0.107 4.107 12 C 0.090 3.910 13 N -0.614 5.614 14 C 0.544 3.456 15 O -0.569 6.569 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.257 1.257 25 H -0.277 1.277 26 C 0.079 3.921 27 N -0.311 5.311 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.208 0.792 34 H 0.153 0.847 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.346 0.654 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.057 0.943 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.349 -28.511 6.099 34.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.088 4.088 5 C -0.321 4.321 6 C -0.106 4.106 7 C 0.010 3.990 8 N -0.297 5.297 9 C -0.019 4.019 10 H 0.131 0.869 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.448 6.448 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.181 1.181 25 H -0.203 1.203 26 C -0.046 4.046 27 N -0.134 5.134 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.146 0.854 33 H 0.225 0.775 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.013 -28.911 6.593 35.775 hybrid contribution 1.312 1.333 -0.445 1.922 sum -18.702 -27.578 6.148 33.884 Atomic orbital electron populations 1.22004 0.93817 1.03875 1.02047 1.22025 0.96144 0.76163 1.05480 1.49092 1.35553 1.10783 1.20603 1.23117 0.94509 0.94685 0.96537 1.21698 1.10167 0.97990 1.02202 1.22327 0.97072 0.95042 0.96132 1.20250 0.97843 0.89803 0.91082 1.60605 1.11036 1.31227 1.26853 1.22650 0.99187 0.86260 0.93791 0.86891 1.22791 1.01794 0.94111 0.95888 1.22767 1.00236 0.95497 0.84739 1.48373 1.41633 1.34940 1.09994 1.19836 0.78265 0.78957 0.89728 1.90680 1.61659 1.64769 1.27717 1.23301 1.02740 1.01704 0.99272 1.85590 1.51474 1.41499 1.13948 1.23198 1.30083 1.23591 0.92568 0.89850 1.26142 0.95135 0.95616 1.02174 1.70190 1.29199 1.25756 1.29634 0.84935 0.78858 0.77326 0.76746 1.19271 1.18117 1.20257 1.22893 0.95907 0.95157 0.90638 1.77232 1.24728 0.97366 1.14106 0.92838 0.93378 0.88384 0.89525 0.85425 0.77505 0.82960 0.92187 0.89271 0.83473 0.90464 0.86989 0.89225 0.89654 0.87436 0.87490 0.91969 0.92513 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.10 71.98 0.73 -0.55 16 2 C 0.12 0.93 7.23 86.38 0.62 1.56 16 3 N -0.38 -5.79 3.68 -348.06 -1.28 -7.07 16 4 C 0.06 0.75 11.45 83.54 0.96 1.70 16 5 C -0.29 -4.85 10.74 21.99 0.24 -4.61 16 6 C 0.06 1.18 6.73 43.10 0.29 1.47 16 7 C 0.14 2.33 6.10 85.56 0.52 2.85 16 8 N -0.67 -11.10 6.35 -489.43 -3.11 -14.21 16 9 C 0.09 1.47 3.23 46.11 0.15 1.62 16 10 H 0.11 1.52 7.90 -2.39 -0.02 1.50 16 11 C -0.11 -1.57 6.78 32.06 0.22 -1.35 16 12 C 0.09 1.70 6.70 86.93 0.58 2.28 16 13 N -0.61 -17.41 3.32 -811.37 -2.70 -20.10 16 14 C 0.54 21.65 7.87 87.66 0.69 22.34 16 15 O -0.57 -28.06 16.19 -3.01 -0.05 -28.11 16 16 C -0.12 -4.94 5.16 71.24 0.37 -4.58 16 17 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.59 9.50 67.96 0.65 -30.95 16 19 H 0.08 4.46 7.80 -2.92 -0.02 4.44 16 20 C 0.01 0.81 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 22 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.08 1.85 6.52 86.73 0.57 2.41 16 27 N -0.31 -6.67 12.42 -47.38 -0.59 -7.25 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.12 8.07 -2.39 -0.02 0.10 16 33 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 36 H 0.09 1.43 8.09 -2.38 -0.02 1.42 16 37 H 0.35 6.09 8.15 -89.69 -0.73 5.36 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.59 7.48 -2.38 -0.02 1.58 16 42 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.11 4.03 7.85 -2.39 -0.02 4.01 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.06 1.44 7.57 -2.39 -0.02 1.42 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -83.84 398.97 0.71 -83.12 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.24 Total: 18.32 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 7.04 Total: -4.52 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -7.39 Total: -104.82 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.05 Total: -28.11 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -83.84 0.71 -83.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.838 kcal (2) G-P(sol) polarization free energy of solvation -83.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds