Wall clock time and date at job start Tue Mar 31 2020 20:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47059 * 240.00389 * 2 1 3 5 5 C 1.53004 * 109.47372 * 63.93128 * 4 2 1 6 6 F 1.39898 * 109.47344 * 53.85236 * 5 4 2 7 7 F 1.39894 * 109.47040 * 173.85634 * 5 4 2 8 8 F 1.39905 * 109.46787 * 293.85306 * 5 4 2 9 9 C 1.50697 * 109.47109 * 119.99984 * 2 1 3 10 10 O 1.21280 * 119.99652 * 114.81771 * 9 2 1 11 11 N 1.34766 * 120.00263 * 294.82205 * 9 2 1 12 12 C 1.47515 * 118.75872 * 356.34418 * 11 9 2 13 13 C 1.53568 * 111.02984 * 138.39285 * 12 11 9 14 14 C 1.51534 * 109.58054 * 320.02513 * 13 12 11 15 15 O 1.42150 * 108.75266 * 91.40232 * 14 13 12 16 16 C 1.38017 * 119.43888 * 272.76463 * 15 14 13 17 17 H 1.08998 * 109.47323 * 303.42567 * 16 15 14 18 18 C 1.53009 * 109.46747 * 183.43226 * 16 15 14 19 19 N 1.46497 * 109.46785 * 64.99377 * 18 16 15 20 20 C 1.36934 * 119.99882 * 179.72354 * 19 18 16 21 21 H 1.08003 * 120.00072 * 0.27409 * 20 19 18 22 22 C 1.38811 * 120.00511 * 180.27441 * 20 19 18 23 23 N 1.31618 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00431 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47124 * 60.00120 * 24 22 20 26 26 H 1.48502 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47132 * 300.00116 * 24 22 20 28 28 C 1.45127 * 118.76088 * 176.36833 * 11 9 2 29 29 H 1.09000 * 109.47246 * 50.18928 * 1 2 3 30 30 H 1.08993 * 109.47342 * 170.19059 * 1 2 3 31 31 H 1.09002 * 109.47005 * 290.19422 * 1 2 3 32 32 H 1.08999 * 109.46851 * 183.92966 * 4 2 1 33 33 H 1.08997 * 109.47095 * 303.92955 * 4 2 1 34 34 H 1.09002 * 109.16801 * 258.79158 * 12 11 9 35 35 H 1.09003 * 109.16159 * 18.04599 * 12 11 9 36 36 H 1.09000 * 109.45230 * 80.05937 * 13 12 11 37 37 H 1.09005 * 109.44959 * 199.98891 * 13 12 11 38 38 H 1.09002 * 109.59267 * 211.18695 * 14 13 12 39 39 H 1.09007 * 109.58976 * 331.47213 * 14 13 12 40 40 H 1.09001 * 109.47220 * 304.99619 * 18 16 15 41 41 H 1.08992 * 109.46890 * 184.99437 * 18 16 15 42 42 H 0.97001 * 120.00330 * 0.02562 * 19 18 16 43 43 H 0.97005 * 120.00165 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.45934 * 149.23437 * 28 11 9 45 45 H 1.09005 * 109.45312 * 29.28220 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6124 0.0550 -2.4966 6 9 2.0320 1.3848 -2.3850 7 9 2.1948 -0.5245 -3.6289 8 9 0.2190 0.0141 -2.6163 9 6 2.0323 -0.7104 1.2304 10 8 2.6501 -1.7484 1.1216 11 7 1.7950 -0.1924 2.4517 12 6 1.1127 1.1118 2.5491 13 6 0.0722 1.1064 3.6786 14 6 -0.6538 -0.2235 3.6939 15 8 0.0310 -1.1080 4.5710 16 6 1.0753 -1.8696 4.0869 17 1 0.7286 -2.4681 3.2445 18 6 1.5875 -2.7945 5.1930 19 7 0.5404 -3.7547 5.5504 20 6 0.7737 -4.6926 6.5205 21 1 1.7281 -4.7216 7.0252 22 6 -0.2164 -5.6061 6.8552 23 7 -1.3793 -5.5711 6.2398 24 14 0.1016 -6.8851 8.1790 25 1 0.4094 -6.2036 9.4620 26 1 -1.1048 -7.7348 8.3463 27 1 1.2531 -7.7340 7.7808 28 6 2.2209 -0.9384 3.6214 29 1 -0.3634 0.6580 -0.7894 30 1 -0.3634 -1.0126 -0.1751 31 1 -0.3633 0.3548 0.9645 32 1 3.1277 -0.7825 -1.2147 33 1 1.6203 -1.7264 -1.2853 34 1 1.8515 1.8884 2.7469 35 1 0.6130 1.3256 1.6043 36 1 0.5735 1.2574 4.6347 37 1 -0.6456 1.9102 3.5147 38 1 -1.6753 -0.0783 4.0456 39 1 -0.6700 -0.6427 2.6878 40 1 1.8513 -2.2019 6.0690 41 1 2.4675 -3.3314 4.8391 42 1 -0.3167 -3.7289 5.0968 43 1 -2.0714 -6.2093 6.4739 44 1 2.4730 -0.2441 4.4230 45 1 3.0967 -1.5371 3.3711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201050864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:26 Heat of formation + Delta-G solvation = -212.071111 kcal Electronic energy + Delta-G solvation = -31221.251961 eV Core-core repulsion = 26438.715253 eV Total energy + Delta-G solvation = -4782.536708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.47949 -47.95668 -47.93806 -40.96989 -38.73658 -35.93528 -35.32035 -34.60713 -32.87123 -30.93684 -29.88277 -28.67500 -26.73042 -25.65009 -24.73252 -23.20962 -22.11735 -21.55989 -20.99259 -19.41796 -18.92844 -18.64173 -18.01083 -17.20905 -16.85892 -16.65388 -16.41870 -15.81865 -15.45957 -15.14551 -14.86350 -14.71352 -14.54187 -14.39833 -14.29061 -14.13527 -14.06108 -13.77710 -13.47855 -13.34795 -13.13124 -12.98687 -12.64948 -12.52781 -12.33063 -12.12709 -11.95972 -11.89860 -11.68716 -11.64508 -11.25961 -10.92983 -10.78690 -10.75475 -10.28289 -10.06906 -9.85347 -9.66183 -9.43939 -8.82195 -8.63511 -6.84655 -5.68970 -2.97260 2.31157 2.37340 2.75266 3.44434 3.48989 3.52614 3.54068 3.58588 3.71505 3.92141 4.09963 4.34771 4.40706 4.51900 4.60908 4.66477 4.70547 4.86507 5.07388 5.14033 5.19044 5.24631 5.25890 5.34868 5.39763 5.43957 5.45998 5.56631 5.63960 5.75758 5.80298 5.93822 5.97080 6.07345 6.32943 6.41322 6.65101 6.77553 7.07779 7.74617 7.91825 7.97811 8.49288 9.60711 10.18694 10.54530 11.53911 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002635 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.213879 B =10623.184075 C =11218.585051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.149 4.149 5 C 0.454 3.546 6 F -0.185 7.185 7 F -0.183 7.183 8 F -0.180 7.180 9 C 0.517 3.483 10 O -0.529 6.529 11 N -0.604 5.604 12 C 0.089 3.911 13 C -0.168 4.168 14 C 0.071 3.929 15 O -0.367 6.367 16 C 0.089 3.911 17 H 0.051 0.949 18 C 0.166 3.834 19 N -0.726 5.726 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.079 3.921 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 19.803 -16.945 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 H 0.127 0.873 4 C -0.187 4.187 5 C 0.400 3.600 6 F -0.166 7.166 7 F -0.164 7.164 8 F -0.161 7.161 9 C 0.304 3.696 10 O -0.405 6.405 11 N -0.337 5.337 12 C -0.033 4.033 13 C -0.206 4.206 14 C -0.006 4.006 15 O -0.285 6.285 16 C 0.029 3.971 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.370 5.370 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.044 4.044 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.086 19.164 -16.696 25.921 hybrid contribution -0.135 -0.391 0.075 0.420 sum 4.951 18.773 -16.622 25.558 Atomic orbital electron populations 1.22403 0.91690 1.04587 1.04250 1.21274 0.98764 1.01220 0.92320 0.87338 1.22720 1.05931 1.01031 0.89056 1.20561 0.75019 0.78253 0.86171 1.93174 1.89958 1.37332 1.96167 1.93200 1.84226 1.84198 1.54780 1.93172 1.30244 1.96291 1.96420 1.20295 0.79638 0.85240 0.84473 1.90755 1.40096 1.23339 1.86277 1.47853 1.58656 1.21192 1.05991 1.22338 0.95599 0.84209 1.01111 1.22518 0.98617 0.99778 0.99666 1.22171 0.95668 0.88327 0.94437 1.86448 1.47454 1.55680 1.38941 1.22276 0.86273 0.90696 0.97833 0.93076 1.20607 0.92430 0.89700 0.93479 1.42211 1.13889 1.35385 1.45522 1.19185 0.98629 1.07139 1.11996 0.91232 1.24733 0.96158 0.99862 1.00256 1.69666 1.04719 1.39060 1.44708 0.86256 0.76764 0.81411 0.81678 1.21300 1.21731 1.21299 1.22474 0.99423 0.95751 0.86759 0.90048 0.90882 0.90274 0.86417 0.86141 0.91297 0.88688 0.89840 0.89583 0.89235 0.93326 0.95477 0.94787 0.77962 0.93554 0.89747 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 7.62 37.16 0.28 -0.99 16 2 C -0.11 -0.93 1.77 -91.77 -0.16 -1.09 16 3 H 0.11 0.67 7.03 -51.93 -0.36 0.31 16 4 C -0.15 -1.20 4.14 -26.73 -0.11 -1.31 16 5 C 0.45 3.66 3.10 37.16 0.12 3.77 16 6 F -0.18 -1.50 16.49 2.25 0.04 -1.47 16 7 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 8 F -0.18 -1.52 14.38 2.25 0.03 -1.49 16 9 C 0.52 6.10 6.96 -10.99 -0.08 6.03 16 10 O -0.53 -8.28 15.40 5.56 0.09 -8.20 16 11 N -0.60 -6.72 2.19 -172.47 -0.38 -7.10 16 12 C 0.09 0.69 5.29 -3.19 -0.02 0.67 16 13 C -0.17 -1.44 5.78 -27.18 -0.16 -1.60 16 14 C 0.07 0.87 6.35 36.42 0.23 1.10 16 15 O -0.37 -6.30 9.38 -26.54 -0.25 -6.55 16 16 C 0.09 1.55 2.68 -25.78 -0.07 1.48 16 17 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.17 3.50 5.92 -4.04 -0.02 3.47 16 19 N -0.73 -19.34 5.54 -59.91 -0.33 -19.67 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 24 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.08 1.08 4.89 -3.83 -0.02 1.06 16 29 H 0.08 0.52 6.19 -51.93 -0.32 0.19 16 30 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.08 0.55 3.99 -51.93 -0.21 0.34 16 32 H 0.12 0.92 8.06 -51.93 -0.42 0.50 16 33 H 0.12 1.03 8.12 -51.93 -0.42 0.60 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.56 3.89 -51.93 -0.20 0.35 16 36 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.58 6.08 -51.93 -0.32 0.27 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.39 10.96 7.65 -40.82 -0.31 10.64 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 45 H 0.10 1.39 7.22 -51.93 -0.38 1.02 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -34.24 362.08 -6.14 -40.38 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.28 Total: 5.65 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.25 Total: 5.03 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.01 Total: -55.07 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.16 Total: -14.74 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.24 -6.14 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201050864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.696 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds