Wall clock time and date at job start Tue Mar 31 2020 20:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47059 * 240.00389 * 2 1 3 5 5 C 1.53004 * 109.47372 * 63.93128 * 4 2 1 6 6 F 1.39898 * 109.47344 * 53.85236 * 5 4 2 7 7 F 1.39894 * 109.47040 * 173.85634 * 5 4 2 8 8 F 1.39905 * 109.46787 * 293.85306 * 5 4 2 9 9 C 1.50697 * 109.47109 * 119.99984 * 2 1 3 10 10 O 1.21280 * 119.99652 * 114.81771 * 9 2 1 11 11 N 1.34766 * 120.00263 * 294.82205 * 9 2 1 12 12 C 1.47515 * 118.75872 * 356.34418 * 11 9 2 13 13 C 1.53568 * 111.02984 * 138.39285 * 12 11 9 14 14 C 1.51534 * 109.58054 * 320.02513 * 13 12 11 15 15 O 1.42150 * 108.75266 * 91.40232 * 14 13 12 16 16 C 1.38017 * 119.43888 * 272.76463 * 15 14 13 17 17 H 1.08998 * 109.47323 * 303.42567 * 16 15 14 18 18 C 1.53009 * 109.46747 * 183.43226 * 16 15 14 19 19 N 1.46497 * 109.46785 * 64.99377 * 18 16 15 20 20 C 1.36934 * 119.99882 * 179.72354 * 19 18 16 21 21 H 1.08003 * 120.00072 * 0.27409 * 20 19 18 22 22 C 1.38811 * 120.00511 * 180.27441 * 20 19 18 23 23 N 1.31618 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00431 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47124 * 60.00120 * 24 22 20 26 26 H 1.48502 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47132 * 300.00116 * 24 22 20 28 28 C 1.45127 * 118.76088 * 176.36833 * 11 9 2 29 29 H 1.09000 * 109.47246 * 50.18928 * 1 2 3 30 30 H 1.08993 * 109.47342 * 170.19059 * 1 2 3 31 31 H 1.09002 * 109.47005 * 290.19422 * 1 2 3 32 32 H 1.08999 * 109.46851 * 183.92966 * 4 2 1 33 33 H 1.08997 * 109.47095 * 303.92955 * 4 2 1 34 34 H 1.09002 * 109.16801 * 258.79158 * 12 11 9 35 35 H 1.09003 * 109.16159 * 18.04599 * 12 11 9 36 36 H 1.09000 * 109.45230 * 80.05937 * 13 12 11 37 37 H 1.09005 * 109.44959 * 199.98891 * 13 12 11 38 38 H 1.09002 * 109.59267 * 211.18695 * 14 13 12 39 39 H 1.09007 * 109.58976 * 331.47213 * 14 13 12 40 40 H 1.09001 * 109.47220 * 304.99619 * 18 16 15 41 41 H 1.08992 * 109.46890 * 184.99437 * 18 16 15 42 42 H 0.97001 * 120.00330 * 0.02562 * 19 18 16 43 43 H 0.97005 * 120.00165 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.45934 * 149.23437 * 28 11 9 45 45 H 1.09005 * 109.45312 * 29.28220 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6124 0.0550 -2.4966 6 9 2.0320 1.3848 -2.3850 7 9 2.1948 -0.5245 -3.6289 8 9 0.2190 0.0141 -2.6163 9 6 2.0323 -0.7104 1.2304 10 8 2.6501 -1.7484 1.1216 11 7 1.7950 -0.1924 2.4517 12 6 1.1127 1.1118 2.5491 13 6 0.0722 1.1064 3.6786 14 6 -0.6538 -0.2235 3.6939 15 8 0.0310 -1.1080 4.5710 16 6 1.0753 -1.8696 4.0869 17 1 0.7286 -2.4681 3.2445 18 6 1.5875 -2.7945 5.1930 19 7 0.5404 -3.7547 5.5504 20 6 0.7737 -4.6926 6.5205 21 1 1.7281 -4.7216 7.0252 22 6 -0.2164 -5.6061 6.8552 23 7 -1.3793 -5.5711 6.2398 24 14 0.1016 -6.8851 8.1790 25 1 0.4094 -6.2036 9.4620 26 1 -1.1048 -7.7348 8.3463 27 1 1.2531 -7.7340 7.7808 28 6 2.2209 -0.9384 3.6214 29 1 -0.3634 0.6580 -0.7894 30 1 -0.3634 -1.0126 -0.1751 31 1 -0.3633 0.3548 0.9645 32 1 3.1277 -0.7825 -1.2147 33 1 1.6203 -1.7264 -1.2853 34 1 1.8515 1.8884 2.7469 35 1 0.6130 1.3256 1.6043 36 1 0.5735 1.2574 4.6347 37 1 -0.6456 1.9102 3.5147 38 1 -1.6753 -0.0783 4.0456 39 1 -0.6700 -0.6427 2.6878 40 1 1.8513 -2.2019 6.0690 41 1 2.4675 -3.3314 4.8391 42 1 -0.3167 -3.7289 5.0968 43 1 -2.0714 -6.2093 6.4739 44 1 2.4730 -0.2441 4.4230 45 1 3.0967 -1.5371 3.3711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201050864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:25 Heat of formation + Delta-G solvation = -234.826261 kcal Electronic energy + Delta-G solvation = -31222.238699 eV Core-core repulsion = 26438.715253 eV Total energy + Delta-G solvation = -4783.523446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.14097 -48.63724 -48.58403 -41.92771 -39.88208 -37.04831 -36.30385 -36.10673 -34.27655 -32.67931 -30.76646 -29.88531 -27.81433 -26.83154 -25.77863 -24.65648 -23.31957 -22.49897 -22.25238 -20.21411 -19.59229 -19.40573 -19.26109 -18.72009 -17.92880 -17.62881 -17.52745 -16.84460 -16.52313 -16.31205 -15.95935 -15.69916 -15.48352 -15.28429 -15.15501 -15.07021 -14.84523 -14.82895 -14.73269 -14.60764 -14.31332 -14.04858 -13.87834 -13.61125 -13.27454 -13.16520 -13.07766 -12.73692 -12.70471 -12.60932 -12.57316 -12.37216 -12.27635 -12.12790 -11.86674 -11.75272 -11.41251 -10.97236 -10.81680 -10.53617 -9.67347 -9.01912 -7.94488 -5.24337 1.43061 1.46617 1.50961 1.56866 1.62391 1.95523 2.56139 2.72702 2.78077 2.92432 3.07080 3.35947 3.38953 3.62462 3.69595 3.76974 3.84430 3.97878 4.04800 4.08030 4.15478 4.26626 4.37523 4.42649 4.44281 4.53774 4.58879 4.66947 4.69312 4.77992 4.82080 4.86313 4.88753 5.09119 5.12983 5.16026 5.25877 5.46668 5.49743 6.20819 6.26054 6.75780 7.01440 7.32267 8.06460 8.31471 9.29188 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002635 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.213879 B =10623.184075 C =11218.585051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 H 0.139 0.861 4 C -0.147 4.147 5 C 0.462 3.538 6 F -0.181 7.181 7 F -0.190 7.190 8 F -0.181 7.181 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.085 3.915 13 C -0.157 4.157 14 C 0.060 3.940 15 O -0.397 6.397 16 C 0.106 3.894 17 H 0.020 0.980 18 C 0.162 3.838 19 N -0.741 5.741 20 C -0.250 4.250 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.093 3.907 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.103 0.897 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 22.187 -17.157 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.127 4.127 3 H 0.156 0.844 4 C -0.186 4.186 5 C 0.408 3.592 6 F -0.163 7.163 7 F -0.171 7.171 8 F -0.163 7.163 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.335 5.335 12 C -0.036 4.036 13 C -0.195 4.195 14 C -0.016 4.016 15 O -0.316 6.316 16 C 0.045 3.955 17 H 0.038 0.962 18 C 0.035 3.965 19 N -0.383 5.383 20 C -0.381 4.381 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.807 3.193 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.031 4.031 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.121 0.879 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.562 21.611 -16.915 28.002 hybrid contribution -0.300 -1.072 0.114 1.119 sum 5.262 20.539 -16.801 27.052 Atomic orbital electron populations 1.22415 0.90939 1.04127 1.05260 1.21293 0.99138 1.02068 0.90156 0.84380 1.22676 1.06057 1.00666 0.89206 1.20423 0.74820 0.78212 0.85739 1.93180 1.89920 1.37044 1.96121 1.93188 1.84365 1.84383 1.55174 1.93170 1.30371 1.96305 1.96405 1.20968 0.78751 0.84728 0.85555 1.90735 1.42257 1.25497 1.86997 1.47953 1.58486 1.22063 1.04975 1.22665 0.96034 0.82801 1.02053 1.22443 0.99145 0.98276 0.99676 1.22481 0.96080 0.89369 0.93634 1.86366 1.47828 1.56594 1.40834 1.21872 0.87787 0.90821 0.94973 0.96166 1.20759 0.91264 0.89547 0.94944 1.42419 1.14497 1.36234 1.45145 1.19646 0.98881 1.07454 1.12139 0.90441 1.25642 0.96036 1.02308 1.02935 1.69842 1.05663 1.40069 1.46538 0.85137 0.76567 0.78592 0.78998 1.20132 1.21997 1.20316 1.22127 0.97093 0.95606 0.88324 0.88402 0.92485 0.89503 0.86237 0.87116 0.88645 0.86288 0.90681 0.86007 0.88804 0.93373 0.94971 0.94734 0.79531 0.93984 0.87890 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 7.62 71.98 0.55 -1.59 16 2 C -0.11 -1.49 1.77 -11.54 -0.02 -1.51 16 3 H 0.14 1.17 7.03 -2.39 -0.02 1.15 16 4 C -0.15 -2.22 4.14 30.60 0.13 -2.09 16 5 C 0.46 6.67 3.10 71.98 0.22 6.89 16 6 F -0.18 -2.47 16.49 44.97 0.74 -1.73 16 7 F -0.19 -3.27 17.32 44.97 0.78 -2.50 16 8 F -0.18 -2.74 14.38 44.97 0.65 -2.09 16 9 C 0.51 11.60 6.96 87.66 0.61 12.21 16 10 O -0.58 -18.39 15.40 -3.03 -0.05 -18.44 16 11 N -0.60 -12.44 2.19 -817.97 -1.79 -14.24 16 12 C 0.08 1.00 5.29 86.38 0.46 1.45 16 13 C -0.16 -2.21 5.78 30.30 0.18 -2.04 16 14 C 0.06 1.40 6.35 71.50 0.45 1.86 16 15 O -0.40 -13.73 9.38 -117.88 -1.11 -14.84 16 16 C 0.11 3.76 2.68 31.21 0.08 3.85 16 17 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 18 C 0.16 7.01 5.92 86.38 0.51 7.52 16 19 N -0.74 -40.73 5.54 -343.45 -1.90 -42.64 16 20 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 23 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 24 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 28 C 0.09 2.49 4.89 87.25 0.43 2.92 16 29 H 0.10 0.94 6.19 -2.39 -0.01 0.93 16 30 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 31 H 0.09 0.95 3.99 -2.39 -0.01 0.94 16 32 H 0.12 1.77 8.06 -2.39 -0.02 1.75 16 33 H 0.11 1.90 8.12 -2.39 -0.02 1.88 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.85 3.89 -2.39 -0.01 0.84 16 36 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 37 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.12 6.08 -2.38 -0.01 1.10 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.37 22.10 7.65 -92.71 -0.71 21.39 16 43 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.10 2.37 8.11 -2.39 -0.02 2.35 16 45 H 0.08 2.43 7.22 -2.38 -0.02 2.41 16 Total: -1.00 -76.57 362.08 4.85 -71.72 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.32 Total: 25.27 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.90 Total: 11.46 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -3.41 Total: -118.45 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.15 Total: -33.28 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 2.17 Total: -6.32 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.57 4.85 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201050864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.105 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds