Wall clock time and date at job start Tue Mar 31 2020 20:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47667 * 2 1 4 4 C 1.53002 * 109.47189 * 240.00280 * 2 1 3 5 5 C 1.52995 * 109.47153 * 64.80512 * 4 2 1 6 6 F 1.39908 * 109.46777 * 55.93411 * 5 4 2 7 7 F 1.39902 * 109.47177 * 175.92703 * 5 4 2 8 8 F 1.39892 * 109.47529 * 295.93351 * 5 4 2 9 9 C 1.50697 * 109.47354 * 120.00250 * 2 1 3 10 10 O 1.21284 * 120.00515 * 119.99958 * 9 2 1 11 11 N 1.34781 * 120.00041 * 299.99663 * 9 2 1 12 12 C 1.47509 * 118.75572 * 359.97438 * 11 9 2 13 13 C 1.53567 * 111.03170 * 221.65197 * 12 11 9 14 14 C 1.51535 * 109.57906 * 39.97490 * 13 12 11 15 15 O 1.42152 * 108.75571 * 268.60048 * 14 13 12 16 16 C 1.38016 * 119.43975 * 87.23635 * 15 14 13 17 17 H 1.08987 * 109.47238 * 56.56895 * 16 15 14 18 18 C 1.53003 * 109.46538 * 176.57107 * 16 15 14 19 19 N 1.46500 * 109.46899 * 299.99863 * 18 16 15 20 20 C 1.36929 * 119.99701 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00499 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00147 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99726 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00408 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47350 * 60.00121 * 24 22 20 26 26 H 1.48503 * 109.47344 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47221 * 300.00154 * 24 22 20 28 28 C 1.45125 * 118.76007 * 179.97438 * 11 9 2 29 29 H 1.09004 * 109.47463 * 174.33430 * 1 2 3 30 30 H 1.09010 * 109.47087 * 294.33127 * 1 2 3 31 31 H 1.09001 * 109.47699 * 54.32904 * 1 2 3 32 32 H 1.09002 * 109.47692 * 184.81257 * 4 2 1 33 33 H 1.09011 * 109.46820 * 304.80833 * 4 2 1 34 34 H 1.09000 * 109.16577 * 342.05601 * 12 11 9 35 35 H 1.09002 * 109.16417 * 101.25147 * 12 11 9 36 36 H 1.08999 * 109.45513 * 160.01175 * 13 12 11 37 37 H 1.08999 * 109.45032 * 279.94593 * 13 12 11 38 38 H 1.09005 * 109.59110 * 28.38461 * 14 13 12 39 39 H 1.09003 * 109.58972 * 148.67222 * 14 13 12 40 40 H 1.09011 * 109.46706 * 180.02562 * 18 16 15 41 41 H 1.08996 * 109.47606 * 60.00579 * 18 16 15 42 42 H 0.96992 * 119.99864 * 0.02562 * 19 18 16 43 43 H 0.97004 * 119.99781 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.45754 * 330.67732 * 28 11 9 45 45 H 1.09002 * 109.44576 * 210.71252 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6310 0.0665 -2.4955 6 9 2.1075 1.3781 -2.3953 7 9 2.1758 -0.5420 -3.6314 8 9 0.2360 0.0838 -2.5994 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6965 1.1192 11 7 1.7068 -0.2500 2.4546 12 6 0.8577 0.9518 2.5581 13 6 1.3618 1.8890 3.6653 14 6 2.8764 1.9311 3.6444 15 8 3.3736 0.9291 4.5216 16 6 3.5660 -0.3528 4.0477 17 1 4.2366 -0.3258 3.1889 18 6 4.1829 -1.2166 5.1496 19 7 5.4707 -0.6467 5.5534 20 6 6.2113 -1.2539 6.5320 21 1 5.8463 -2.1532 7.0060 22 6 7.4313 -0.7138 6.9150 23 7 7.8759 0.3824 6.3378 24 14 8.4421 -1.5424 8.2496 25 1 8.7789 -2.9260 7.8283 26 1 9.6937 -0.7746 8.4713 27 1 7.6576 -1.5858 9.5097 28 6 2.2048 -0.9553 3.6211 29 1 -0.3634 -1.0227 -0.1015 30 1 -0.3634 0.4234 0.9365 31 1 -0.3634 0.5992 -0.8348 32 1 3.1265 -0.7965 -1.2073 33 1 1.6079 -1.7211 -1.2934 34 1 0.8713 1.4826 1.6061 35 1 -0.1649 0.6491 2.7834 36 1 0.9684 2.8919 3.4990 37 1 1.0222 1.5222 4.6338 38 1 3.2335 1.7407 2.6323 39 1 3.2194 2.9117 3.9744 40 1 4.3353 -2.2290 4.7751 41 1 3.5122 -1.2437 6.0084 42 1 5.7986 0.1606 5.1275 43 1 8.7283 0.7601 6.6057 44 1 2.3340 -2.0104 3.3797 45 1 1.4907 -0.8544 4.4384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201050865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:29 Heat of formation + Delta-G solvation = -234.779796 kcal Electronic energy + Delta-G solvation = -31111.210024 eV Core-core repulsion = 26327.688593 eV Total energy + Delta-G solvation = -4783.521431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.15873 -48.65342 -48.60418 -41.89976 -39.90082 -37.04065 -36.31911 -36.04972 -34.27866 -32.66472 -30.84426 -29.80511 -27.69265 -26.98012 -25.72688 -24.63195 -23.34308 -22.38795 -22.29722 -20.31306 -19.60652 -19.40308 -19.25805 -18.71302 -17.91237 -17.57488 -17.54368 -16.98165 -16.54117 -16.17593 -15.88394 -15.67424 -15.45642 -15.25299 -15.16554 -15.11170 -14.91789 -14.77230 -14.75154 -14.55876 -14.53934 -13.95356 -13.89489 -13.58857 -13.29117 -13.10789 -13.04692 -12.73252 -12.69994 -12.62087 -12.36545 -12.33873 -12.20320 -12.14364 -11.93610 -11.80643 -11.42656 -10.96725 -10.81233 -10.54464 -9.68246 -9.01340 -7.94088 -5.23905 1.45334 1.46840 1.51044 1.56931 1.60584 1.95010 2.56329 2.72305 2.77650 2.92419 3.06186 3.37172 3.39116 3.62392 3.69459 3.79005 3.84627 3.97497 4.06411 4.08069 4.15733 4.29215 4.37983 4.44603 4.46734 4.53561 4.61364 4.68590 4.71154 4.81819 4.84887 4.87983 4.89419 5.09251 5.13804 5.20689 5.26680 5.46487 5.48269 6.20820 6.26399 6.75842 7.01762 7.32713 8.07358 8.32450 9.29586 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002592 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.483882 B =10801.868422 C =11411.089850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 H 0.125 0.875 4 C -0.147 4.147 5 C 0.462 3.538 6 F -0.186 7.186 7 F -0.190 7.190 8 F -0.176 7.176 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.094 3.906 13 C -0.159 4.159 14 C 0.063 3.937 15 O -0.397 6.397 16 C 0.105 3.895 17 H 0.020 0.980 18 C 0.162 3.838 19 N -0.740 5.740 20 C -0.249 4.249 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.094 3.906 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.082 0.918 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 3.960 -17.269 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.129 4.129 3 H 0.143 0.857 4 C -0.186 4.186 5 C 0.408 3.592 6 F -0.167 7.167 7 F -0.171 7.171 8 F -0.157 7.157 9 C 0.300 3.700 10 O -0.456 6.456 11 N -0.335 5.335 12 C -0.026 4.026 13 C -0.197 4.197 14 C -0.013 4.013 15 O -0.316 6.316 16 C 0.044 3.956 17 H 0.038 0.962 18 C 0.035 3.965 19 N -0.383 5.383 20 C -0.381 4.381 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.807 3.193 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.201 1.201 28 C -0.030 4.030 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.835 3.383 -17.035 28.689 hybrid contribution 1.205 -0.101 0.089 1.212 sum -21.630 3.282 -16.946 27.673 Atomic orbital electron populations 1.22488 0.89714 1.04508 1.06064 1.21279 1.00256 1.01277 0.90057 0.85687 1.22672 1.05803 1.00865 0.89268 1.20445 0.74794 0.78239 0.85756 1.93188 1.88221 1.39062 1.96244 1.93191 1.85897 1.83138 1.54914 1.93138 1.29792 1.96408 1.96385 1.20986 0.79296 0.84177 0.85510 1.90738 1.39377 1.28433 1.87011 1.47965 1.51041 1.29493 1.04968 1.22633 0.94255 0.84240 1.01462 1.22471 0.94995 1.02206 0.99988 1.22408 0.94652 0.90974 0.93263 1.86367 1.85413 1.18390 1.41449 1.21895 0.95007 0.83585 0.95081 0.96208 1.20769 0.86803 0.94275 0.94664 1.42403 1.19584 1.31240 1.45033 1.19651 0.99853 1.06618 1.11983 0.90437 1.25649 0.99505 0.98774 1.03040 1.69850 1.21669 1.23732 1.46870 0.85133 0.77599 0.77516 0.79019 1.20326 1.22012 1.20115 1.22131 0.95156 0.97215 0.88505 0.91636 0.88711 0.88877 0.87323 0.86111 0.86910 0.88095 0.86076 0.90626 0.93895 0.88907 0.94814 0.94953 0.79459 0.94003 0.89947 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 7.92 71.98 0.57 -0.94 16 2 C -0.11 -1.51 1.81 -11.54 -0.02 -1.53 16 3 H 0.13 1.41 6.83 -2.39 -0.02 1.39 16 4 C -0.15 -2.24 4.19 30.59 0.13 -2.11 16 5 C 0.46 6.80 3.13 71.98 0.22 7.02 16 6 F -0.19 -2.95 16.55 44.97 0.74 -2.21 16 7 F -0.19 -3.36 17.32 44.97 0.78 -2.58 16 8 F -0.18 -2.36 14.17 44.97 0.64 -1.72 16 9 C 0.51 11.52 7.04 87.66 0.62 12.14 16 10 O -0.58 -18.34 15.35 -3.04 -0.05 -18.39 16 11 N -0.60 -12.30 2.19 -817.86 -1.79 -14.09 16 12 C 0.09 1.08 4.44 86.38 0.38 1.47 16 13 C -0.16 -2.28 5.79 30.30 0.18 -2.10 16 14 C 0.06 1.52 6.37 71.50 0.46 1.98 16 15 O -0.40 -13.99 9.18 -117.87 -1.08 -15.07 16 16 C 0.10 3.75 2.74 31.23 0.09 3.83 16 17 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 18 C 0.16 7.03 5.95 86.38 0.51 7.54 16 19 N -0.74 -40.84 5.49 -343.44 -1.88 -42.73 16 20 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 23 N -0.97 -62.04 13.06 21.65 0.28 -61.76 16 24 Si 0.98 47.65 29.55 68.60 2.03 49.67 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 C 0.09 2.51 4.87 87.27 0.42 2.93 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.53 4.55 -2.38 -0.01 0.52 16 31 H 0.09 0.70 5.78 -2.39 -0.01 0.68 16 32 H 0.11 1.93 7.96 -2.39 -0.02 1.91 16 33 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.11 0.77 5.03 -2.39 -0.01 0.76 16 35 H 0.10 0.69 7.47 -2.39 -0.02 0.67 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 38 H 0.04 1.04 7.40 -2.38 -0.02 1.02 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.37 22.24 7.53 -92.71 -0.70 21.55 16 43 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.08 2.40 7.27 -2.39 -0.02 2.38 16 45 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 Total: -1.00 -76.98 362.99 4.86 -72.12 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.33 Total: 24.59 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.86 Total: 12.16 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.39 Total: -118.57 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.13 Total: -33.46 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 2.16 Total: -6.51 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -76.98 4.86 -72.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201050865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.657 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds