Wall clock time and date at job start Tue Mar 31 2020 20:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46862 * 2 1 4 4 C 1.52993 * 109.47541 * 239.99331 * 2 1 3 5 5 C 1.50706 * 109.46853 * 64.99719 * 4 2 1 6 6 O 1.21279 * 120.00128 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.47515 * 118.76014 * 0.02562 * 7 5 4 9 9 C 1.53566 * 111.02793 * 138.37232 * 8 7 5 10 10 C 1.51539 * 109.58465 * 320.02429 * 9 8 7 11 11 O 1.42160 * 108.76269 * 91.39749 * 10 9 8 12 12 C 1.38014 * 119.43619 * 272.78314 * 11 10 9 13 13 H 1.09003 * 109.47228 * 303.42188 * 12 11 10 14 14 C 1.52998 * 109.46682 * 183.42679 * 12 11 10 15 15 N 1.46506 * 109.47233 * 65.00187 * 14 12 11 16 16 C 1.36931 * 119.99939 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 C 1.45124 * 118.75724 * 180.02562 * 7 5 4 25 25 C 1.53004 * 109.47120 * 119.98999 * 2 1 3 26 26 F 1.39895 * 109.47304 * 179.97438 * 25 2 1 27 27 F 1.39891 * 109.47391 * 300.00511 * 25 2 1 28 28 F 1.39908 * 109.46580 * 60.00436 * 25 2 1 29 29 H 1.09000 * 109.47270 * 300.00466 * 1 2 3 30 30 H 1.09002 * 109.47256 * 60.00534 * 1 2 3 31 31 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47461 * 305.00530 * 4 2 1 33 33 H 1.08998 * 109.47435 * 184.99564 * 4 2 1 34 34 H 1.08999 * 109.16344 * 17.97627 * 8 7 5 35 35 H 1.08999 * 109.12446 * 258.74984 * 8 7 5 36 36 H 1.08998 * 109.45442 * 199.98840 * 9 8 7 37 37 H 1.09000 * 109.45455 * 80.05557 * 9 8 7 38 38 H 1.09003 * 109.58452 * 331.61890 * 10 9 8 39 39 H 1.08993 * 109.59017 * 211.18465 * 10 9 8 40 40 H 1.09001 * 109.47671 * 305.00112 * 14 12 11 41 41 H 1.09006 * 109.47297 * 184.99831 * 14 12 11 42 42 H 0.97000 * 119.99307 * 359.97438 * 15 14 12 43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.45913 * 149.26835 * 24 7 5 45 45 H 1.08998 * 109.46352 * 29.31017 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0568 -2.4765 6 8 1.0116 1.0872 -2.3633 7 7 1.9845 -0.3922 -3.7000 8 6 2.7499 -1.6488 -3.8060 9 6 2.2279 -2.5162 -4.9607 10 6 0.7145 -2.4497 -5.0021 11 8 0.3270 -1.3905 -5.8676 12 6 0.2063 -0.1117 -5.3627 13 1 -0.5002 -0.1140 -4.5326 14 6 -0.3009 0.8245 -6.4614 15 7 -1.6577 0.4315 -6.8500 16 6 -2.3205 1.1304 -7.8233 17 1 -1.8434 1.9715 -8.3042 18 6 -3.6059 0.7577 -8.1919 19 7 -4.2452 1.4328 -9.1235 20 14 -4.4316 -0.6966 -7.3597 21 1 -5.1780 -0.2253 -6.1654 22 1 -5.3737 -1.3411 -8.3096 23 1 -3.3997 -1.6795 -6.9423 24 6 1.5870 0.3788 -4.8635 25 6 2.0400 -0.7211 1.2494 26 9 3.4389 -0.7216 1.2491 27 9 1.5736 -0.0615 2.3915 28 9 1.5736 -2.0401 1.2495 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2054 34 1 2.6583 -2.2033 -2.8721 35 1 3.7997 -1.4137 -3.9811 36 1 2.5418 -3.5490 -4.8095 37 1 2.6333 -2.1482 -5.9032 38 1 0.3295 -2.2620 -3.9998 39 1 0.3174 -3.3926 -5.3779 40 1 0.3582 0.7594 -7.3271 41 1 -0.3119 1.8490 -6.0893 42 1 -2.0864 -0.3237 -6.4178 43 1 -5.1435 1.1727 -9.3809 44 1 2.3259 0.2496 -5.6545 45 1 1.5227 1.4334 -4.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201320367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:22 Heat of formation + Delta-G solvation = -217.598068 kcal Electronic energy + Delta-G solvation = -31143.077554 eV Core-core repulsion = 26360.301179 eV Total energy + Delta-G solvation = -4782.776375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.49417 -47.97641 -47.94959 -40.91602 -38.90987 -35.97118 -35.49804 -34.77510 -32.95412 -31.19083 -29.97500 -28.24417 -26.87281 -26.52551 -25.13277 -22.72421 -21.81195 -21.62204 -21.09748 -19.44001 -18.88774 -18.61527 -18.14108 -17.69790 -16.99726 -16.69328 -16.50728 -16.22267 -15.44974 -15.10335 -14.89281 -14.67176 -14.40486 -14.38993 -14.31059 -14.13231 -14.09481 -13.94997 -13.65339 -13.53574 -13.33138 -13.03752 -12.80266 -12.63523 -12.42181 -12.20095 -11.98313 -11.83644 -11.72392 -11.66365 -11.46011 -11.24296 -10.95042 -10.83679 -10.42089 -10.10826 -9.97913 -9.59054 -9.54711 -8.86217 -8.75793 -7.17494 -5.71787 -3.06422 2.23616 2.30374 2.66583 3.37980 3.42855 3.47400 3.49510 3.55809 3.66277 3.77081 4.10673 4.31125 4.35838 4.43275 4.54307 4.65256 4.72119 4.78158 4.96897 5.01049 5.05442 5.16201 5.17355 5.28613 5.34798 5.42886 5.43575 5.52016 5.58347 5.66374 5.75055 5.81836 5.92581 5.93514 5.98393 6.30470 6.53878 6.65522 6.98033 7.80298 7.84393 8.03795 8.47173 9.26613 9.99124 10.19667 11.46698 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.002880 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.676459 B = 9719.758559 C =10364.885279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.144 4.144 5 C 0.513 3.487 6 O -0.525 6.525 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.167 4.167 10 C 0.072 3.928 11 O -0.371 6.371 12 C 0.084 3.916 13 H 0.052 0.948 14 C 0.170 3.830 15 N -0.750 5.750 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.936 5.936 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.275 1.275 24 C 0.081 3.919 25 C 0.453 3.547 26 F -0.185 7.185 27 F -0.180 7.180 28 F -0.183 7.183 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.190 -9.343 20.712 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 H 0.142 0.858 4 C -0.184 4.184 5 C 0.300 3.700 6 O -0.401 6.401 7 N -0.341 5.341 8 C -0.020 4.020 9 C -0.205 4.205 10 C -0.005 4.005 11 O -0.289 6.289 12 C 0.024 3.976 13 H 0.069 0.931 14 C 0.043 3.957 15 N -0.396 5.396 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.584 5.584 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.201 1.201 24 C -0.042 4.042 25 C 0.399 3.601 26 F -0.166 7.166 27 F -0.162 7.162 28 F -0.164 7.164 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.802 -8.671 20.424 29.083 hybrid contribution -0.335 -1.277 1.057 1.691 sum 18.468 -9.947 21.481 30.024 Atomic orbital electron populations 1.22026 0.90637 1.03545 1.05577 1.22190 1.00569 1.01693 0.89329 0.85825 1.21781 1.03796 1.00779 0.92056 1.20300 0.79534 0.85721 0.84419 1.90733 1.39054 1.24245 1.86076 1.47932 1.55456 1.24465 1.06198 1.22060 0.95401 0.84347 1.00174 1.22503 0.98138 1.00396 0.99503 1.22141 0.92920 0.90972 0.94451 1.86438 1.88134 1.15586 1.38785 1.22338 0.94230 0.83456 0.97533 0.93058 1.20592 0.87397 0.94035 0.93712 1.42569 1.13198 1.37082 1.46707 1.19057 0.96690 1.09925 1.11441 0.89173 1.24645 0.96930 0.98905 0.98674 1.69705 1.13348 1.41947 1.33385 0.86543 0.79398 0.83655 0.79061 1.21176 1.21761 1.20065 1.22433 0.97592 0.97237 0.86971 1.20643 0.75307 0.77724 0.86388 1.93177 1.30211 1.96435 1.96825 1.93185 1.88431 1.80705 1.53849 1.93176 1.88439 1.37958 1.96836 0.91191 0.88146 0.91757 0.87525 0.87616 0.89894 0.91064 0.89508 0.89706 0.93531 0.89241 0.94646 0.93831 0.80371 0.93113 0.89570 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.69 37.16 0.32 -1.10 16 2 C -0.12 -0.93 2.01 -90.62 -0.18 -1.12 16 3 H 0.12 1.00 7.95 -51.93 -0.41 0.58 16 4 C -0.14 -1.03 3.27 -27.88 -0.09 -1.12 16 5 C 0.51 5.42 7.35 -10.98 -0.08 5.34 16 6 O -0.52 -7.40 13.39 5.56 0.07 -7.32 16 7 N -0.61 -6.09 2.19 -172.47 -0.38 -6.46 16 8 C 0.10 0.69 6.00 -3.19 -0.02 0.67 16 9 C -0.17 -1.29 5.78 -27.18 -0.16 -1.45 16 10 C 0.07 0.80 6.38 36.42 0.23 1.04 16 11 O -0.37 -5.89 9.38 -26.53 -0.25 -6.14 16 12 C 0.08 1.35 2.68 -25.79 -0.07 1.28 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.17 3.38 5.92 -4.04 -0.02 3.36 16 15 N -0.75 -18.64 5.34 -59.90 -0.32 -18.96 16 16 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 17 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.94 -30.00 13.97 55.49 0.78 -29.22 16 20 Si 0.88 22.79 27.74 -169.99 -4.71 18.07 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16 24 C 0.08 1.01 4.86 -3.83 -0.02 0.99 16 25 C 0.45 3.68 2.69 37.16 0.10 3.78 16 26 F -0.19 -1.52 16.71 2.25 0.04 -1.49 16 27 F -0.18 -1.66 16.80 2.25 0.04 -1.62 16 28 F -0.18 -1.55 16.37 2.25 0.04 -1.51 16 29 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 30 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.06 0.52 7.80 -51.93 -0.41 0.12 16 32 H 0.11 0.62 7.21 -51.93 -0.37 0.25 16 33 H 0.11 0.56 7.56 -51.93 -0.39 0.17 16 34 H 0.08 0.39 5.88 -51.93 -0.31 0.08 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 38 H 0.05 0.51 7.40 -51.93 -0.38 0.12 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.36 8.99 5.52 -40.82 -0.23 8.77 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.10 1.30 7.27 -51.93 -0.38 0.92 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -34.58 365.92 -5.98 -40.57 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.56 Total: 4.07 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.24 Total: 4.50 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.08 Total: -54.65 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.17 Total: -13.46 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.58 -5.98 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201320367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.032 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds