Wall clock time and date at job start Tue Mar 31 2020 20:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46862 * 2 1 4 4 C 1.52993 * 109.47541 * 239.99331 * 2 1 3 5 5 C 1.50706 * 109.46853 * 64.99719 * 4 2 1 6 6 O 1.21279 * 120.00128 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.47515 * 118.76014 * 0.02562 * 7 5 4 9 9 C 1.53566 * 111.02793 * 138.37232 * 8 7 5 10 10 C 1.51539 * 109.58465 * 320.02429 * 9 8 7 11 11 O 1.42160 * 108.76269 * 91.39749 * 10 9 8 12 12 C 1.38014 * 119.43619 * 272.78314 * 11 10 9 13 13 H 1.09003 * 109.47228 * 303.42188 * 12 11 10 14 14 C 1.52998 * 109.46682 * 183.42679 * 12 11 10 15 15 N 1.46506 * 109.47233 * 65.00187 * 14 12 11 16 16 C 1.36931 * 119.99939 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 C 1.45124 * 118.75724 * 180.02562 * 7 5 4 25 25 C 1.53004 * 109.47120 * 119.98999 * 2 1 3 26 26 F 1.39895 * 109.47304 * 179.97438 * 25 2 1 27 27 F 1.39891 * 109.47391 * 300.00511 * 25 2 1 28 28 F 1.39908 * 109.46580 * 60.00436 * 25 2 1 29 29 H 1.09000 * 109.47270 * 300.00466 * 1 2 3 30 30 H 1.09002 * 109.47256 * 60.00534 * 1 2 3 31 31 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47461 * 305.00530 * 4 2 1 33 33 H 1.08998 * 109.47435 * 184.99564 * 4 2 1 34 34 H 1.08999 * 109.16344 * 17.97627 * 8 7 5 35 35 H 1.08999 * 109.12446 * 258.74984 * 8 7 5 36 36 H 1.08998 * 109.45442 * 199.98840 * 9 8 7 37 37 H 1.09000 * 109.45455 * 80.05557 * 9 8 7 38 38 H 1.09003 * 109.58452 * 331.61890 * 10 9 8 39 39 H 1.08993 * 109.59017 * 211.18465 * 10 9 8 40 40 H 1.09001 * 109.47671 * 305.00112 * 14 12 11 41 41 H 1.09006 * 109.47297 * 184.99831 * 14 12 11 42 42 H 0.97000 * 119.99307 * 359.97438 * 15 14 12 43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.45913 * 149.26835 * 24 7 5 45 45 H 1.08998 * 109.46352 * 29.31017 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0568 -2.4765 6 8 1.0116 1.0872 -2.3633 7 7 1.9845 -0.3922 -3.7000 8 6 2.7499 -1.6488 -3.8060 9 6 2.2279 -2.5162 -4.9607 10 6 0.7145 -2.4497 -5.0021 11 8 0.3270 -1.3905 -5.8676 12 6 0.2063 -0.1117 -5.3627 13 1 -0.5002 -0.1140 -4.5326 14 6 -0.3009 0.8245 -6.4614 15 7 -1.6577 0.4315 -6.8500 16 6 -2.3205 1.1304 -7.8233 17 1 -1.8434 1.9715 -8.3042 18 6 -3.6059 0.7577 -8.1919 19 7 -4.2452 1.4328 -9.1235 20 14 -4.4316 -0.6966 -7.3597 21 1 -5.1780 -0.2253 -6.1654 22 1 -5.3737 -1.3411 -8.3096 23 1 -3.3997 -1.6795 -6.9423 24 6 1.5870 0.3788 -4.8635 25 6 2.0400 -0.7211 1.2494 26 9 3.4389 -0.7216 1.2491 27 9 1.5736 -0.0615 2.3915 28 9 1.5736 -2.0401 1.2495 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2054 34 1 2.6583 -2.2033 -2.8721 35 1 3.7997 -1.4137 -3.9811 36 1 2.5418 -3.5490 -4.8095 37 1 2.6333 -2.1482 -5.9032 38 1 0.3295 -2.2620 -3.9998 39 1 0.3174 -3.3926 -5.3779 40 1 0.3582 0.7594 -7.3271 41 1 -0.3119 1.8490 -6.0893 42 1 -2.0864 -0.3237 -6.4178 43 1 -5.1435 1.1727 -9.3809 44 1 2.3259 0.2496 -5.6545 45 1 1.5227 1.4334 -4.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201320367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:21 Heat of formation + Delta-G solvation = -240.633024 kcal Electronic energy + Delta-G solvation = -31144.076425 eV Core-core repulsion = 26360.301179 eV Total energy + Delta-G solvation = -4783.775246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.13503 -48.62389 -48.58800 -41.77900 -39.92277 -37.06412 -36.45358 -36.07792 -34.32498 -32.99916 -30.99658 -29.36021 -27.67196 -27.21543 -26.50144 -24.22901 -23.00507 -22.36967 -22.30101 -20.16373 -19.81292 -19.54814 -19.28904 -18.79874 -17.93160 -17.60619 -17.50508 -17.05152 -16.47895 -16.38561 -15.89171 -15.69368 -15.50894 -15.17182 -15.04377 -15.01901 -14.88072 -14.78591 -14.75072 -14.68991 -14.29568 -14.12812 -14.03576 -13.84271 -13.53904 -13.43831 -13.11324 -12.86269 -12.64726 -12.49138 -12.38795 -12.36980 -12.25673 -12.09120 -11.95336 -11.82525 -11.47278 -11.03976 -10.86094 -10.57986 -9.66649 -9.32852 -8.04582 -5.37739 1.35517 1.38646 1.46856 1.48243 1.61201 1.95116 2.46998 2.69048 2.74781 2.93804 3.03554 3.27257 3.43754 3.48173 3.69284 3.79326 3.84182 3.96326 4.04270 4.07512 4.14088 4.26244 4.29550 4.44521 4.45904 4.48318 4.51764 4.68540 4.73398 4.77405 4.86281 4.87455 4.88897 5.07133 5.12918 5.17909 5.24089 5.50424 5.72000 6.18764 6.23611 6.71801 7.04759 7.06655 7.80749 8.00643 9.16958 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.002880 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.676459 B = 9719.758559 C =10364.885279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.568 6.568 7 N -0.607 5.607 8 C 0.097 3.903 9 C -0.159 4.159 10 C 0.061 3.939 11 O -0.400 6.400 12 C 0.101 3.899 13 H 0.032 0.968 14 C 0.164 3.836 15 N -0.754 5.754 16 C -0.236 4.236 17 H 0.059 0.941 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.256 1.256 24 C 0.094 3.906 25 C 0.460 3.540 26 F -0.183 7.183 27 F -0.188 7.188 28 F -0.182 7.182 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.041 0.959 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.101 0.899 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.234 -12.188 22.761 33.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 H 0.138 0.862 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.447 6.447 7 N -0.339 5.339 8 C -0.024 4.024 9 C -0.197 4.197 10 C -0.014 4.014 11 O -0.319 6.319 12 C 0.041 3.959 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.399 5.399 16 C -0.366 4.366 17 H 0.077 0.923 18 C -0.254 4.254 19 N -0.633 5.633 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.180 1.180 24 C -0.031 4.031 25 C 0.406 3.594 26 F -0.164 7.164 27 F -0.170 7.170 28 F -0.164 7.164 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.198 0.802 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.915 -11.553 22.505 32.824 hybrid contribution -0.906 -0.360 0.398 1.053 sum 20.008 -11.913 22.904 32.662 Atomic orbital electron populations 1.21954 0.91586 1.03671 1.04364 1.22123 0.99757 1.01787 0.89826 0.86217 1.21820 1.05561 1.00731 0.89495 1.20910 0.78604 0.85374 0.85369 1.90727 1.40950 1.26327 1.86719 1.48022 1.55345 1.25357 1.05164 1.22391 0.95904 0.82804 1.01255 1.22437 0.95191 1.02574 0.99467 1.22458 0.95600 0.89517 0.93843 1.86360 1.88876 1.16014 1.40660 1.21929 0.95716 0.83451 0.94819 0.95026 1.20748 0.85128 0.95258 0.95117 1.42586 1.14897 1.36700 1.45746 1.19066 0.96899 1.09099 1.11584 0.92273 1.25485 0.97777 1.02367 0.99793 1.69879 1.13830 1.44170 1.35456 0.85400 0.78412 0.80120 0.77864 1.20520 1.21684 1.18037 1.22089 0.95846 0.96759 0.88418 1.20536 0.75280 0.77556 0.85987 1.93183 1.30041 1.96422 1.96793 1.93174 1.88557 1.80907 1.54317 1.93178 1.88455 1.37920 1.96812 0.91102 0.90640 0.90936 0.85443 0.84847 0.86958 0.88802 0.86206 0.90830 0.93307 0.88542 0.94697 0.94077 0.80178 0.93228 0.88119 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 8.69 71.98 0.63 -2.03 16 2 C -0.12 -1.60 2.01 -10.80 -0.02 -1.62 16 3 H 0.12 1.79 7.95 -2.39 -0.02 1.77 16 4 C -0.14 -1.49 3.27 29.85 0.10 -1.40 16 5 C 0.51 9.78 7.35 87.66 0.64 10.42 16 6 O -0.57 -15.94 13.39 -3.03 -0.04 -15.98 16 7 N -0.61 -10.65 2.19 -817.97 -1.79 -12.45 16 8 C 0.10 0.87 6.00 86.38 0.52 1.39 16 9 C -0.16 -1.83 5.78 30.31 0.18 -1.65 16 10 C 0.06 1.21 6.38 71.50 0.46 1.67 16 11 O -0.40 -12.20 9.38 -117.85 -1.11 -13.30 16 12 C 0.10 3.20 2.68 31.21 0.08 3.29 16 13 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 14 C 0.16 6.64 5.92 86.38 0.51 7.15 16 15 N -0.75 -37.90 5.34 -343.44 -1.83 -39.74 16 16 C -0.24 -14.13 10.47 84.04 0.88 -13.25 16 17 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 18 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.98 -64.73 13.97 21.65 0.30 -64.42 16 20 Si 0.95 47.51 27.74 68.60 1.90 49.41 16 21 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.26 -11.76 6.52 99.48 0.65 -11.12 16 24 C 0.09 2.23 4.86 87.25 0.42 2.66 16 25 C 0.46 6.34 2.69 71.98 0.19 6.54 16 26 F -0.18 -2.48 16.71 44.97 0.75 -1.73 16 27 F -0.19 -3.15 16.80 44.97 0.76 -2.39 16 28 F -0.18 -2.55 16.37 44.97 0.74 -1.81 16 29 H 0.07 1.13 7.80 -2.39 -0.02 1.12 16 30 H 0.07 1.70 5.95 -2.39 -0.01 1.69 16 31 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 32 H 0.13 0.91 7.21 -2.39 -0.02 0.89 16 33 H 0.13 0.77 7.56 -2.39 -0.02 0.76 16 34 H 0.11 0.39 5.88 -2.39 -0.01 0.38 16 35 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 1.07 8.01 -2.39 -0.02 1.05 16 38 H 0.05 0.93 7.40 -2.39 -0.02 0.92 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.37 17.91 5.52 -92.71 -0.51 17.40 16 43 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 44 H 0.10 2.10 8.11 -2.38 -0.02 2.08 16 45 H 0.08 2.22 7.27 -2.39 -0.02 2.21 16 Total: -1.00 -77.87 365.92 5.18 -72.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.45 Total: 19.93 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.05 Total: 9.79 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.32 Total: -116.61 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.15 Total: -29.29 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 2.24 Total: -5.93 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.90 Total: 49.41 kcal Total: -77.87 5.18 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201320367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.942 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds