Wall clock time and date at job start Tue Mar 31 2020 20:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47662 * 2 1 4 4 C 1.52997 * 109.47181 * 120.00721 * 2 1 3 5 5 C 1.50703 * 109.47046 * 294.99514 * 4 2 1 6 6 O 1.21282 * 119.99821 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00100 * 180.02562 * 5 4 2 8 8 C 1.47509 * 118.75651 * 359.97438 * 7 5 4 9 9 C 1.53573 * 111.02801 * 221.62812 * 8 7 5 10 10 C 1.51543 * 109.58098 * 39.97825 * 9 8 7 11 11 O 1.42153 * 108.76490 * 268.60230 * 10 9 8 12 12 C 1.38012 * 119.43841 * 87.22025 * 11 10 9 13 13 H 1.09003 * 109.47164 * 56.57704 * 12 11 10 14 14 C 1.52996 * 109.46845 * 176.57193 * 12 11 10 15 15 N 1.46493 * 109.47400 * 300.00171 * 14 12 11 16 16 C 1.36936 * 120.00314 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.45121 * 118.76017 * 180.02562 * 7 5 4 25 25 C 1.53009 * 109.46800 * 240.00457 * 2 1 3 26 26 F 1.39897 * 109.47075 * 300.00068 * 25 2 1 27 27 F 1.39899 * 109.47106 * 60.00042 * 25 2 1 28 28 F 1.39894 * 109.46879 * 180.02562 * 25 2 1 29 29 H 1.08989 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46942 * 299.99966 * 1 2 3 31 31 H 1.09004 * 109.46989 * 59.99187 * 1 2 3 32 32 H 1.09001 * 109.47238 * 174.99647 * 4 2 1 33 33 H 1.08994 * 109.47401 * 54.99729 * 4 2 1 34 34 H 1.09004 * 109.16479 * 101.23322 * 8 7 5 35 35 H 1.08997 * 109.16868 * 342.02584 * 8 7 5 36 36 H 1.09002 * 109.45519 * 279.94737 * 9 8 7 37 37 H 1.08994 * 109.43673 * 160.00314 * 9 8 7 38 38 H 1.08999 * 109.58353 * 148.81421 * 10 9 8 39 39 H 1.09003 * 109.58547 * 28.38287 * 10 9 8 40 40 H 1.09004 * 109.47066 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47234 * 60.00945 * 14 12 11 42 42 H 0.97000 * 120.00040 * 0.02562 * 15 14 12 43 43 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 44 44 H 1.09007 * 109.45883 * 330.68345 * 24 7 5 45 45 H 1.08997 * 109.45898 * 210.73029 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4766 6 8 1.0110 1.0868 2.3634 7 7 1.9854 -0.3917 3.7000 8 6 2.7516 -1.6477 3.8058 9 6 2.2307 -2.5153 4.9610 10 6 0.7172 -2.4496 5.0031 11 8 0.3294 -1.3906 5.8684 12 6 0.2076 -0.1120 5.3633 13 1 -0.4992 -0.1149 4.5336 14 6 -0.2996 0.8242 6.4620 15 7 -1.6059 0.3594 6.9350 16 6 -2.2594 1.0446 7.9243 17 1 -1.8120 1.9278 8.3557 18 6 -3.4970 0.6038 8.3727 19 7 -4.1226 1.2593 9.3274 20 14 -4.2707 -0.9242 7.6271 21 1 -5.1131 -0.5368 6.4672 22 1 -3.2014 -1.8501 7.1750 23 1 -5.1126 -1.6005 8.6465 24 6 1.5871 0.3787 4.8636 25 6 2.0399 -0.7212 -1.2494 26 9 1.5735 -2.0401 -1.2495 27 9 1.5736 -0.0616 -2.3916 28 9 3.4389 -0.7217 -1.2491 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 3.1263 -0.7997 1.2054 33 1 1.6054 -1.7199 1.2950 34 1 3.8016 -1.4128 3.9801 35 1 2.6600 -2.2026 2.8721 36 1 2.6363 -2.1468 5.9033 37 1 2.5451 -3.5478 4.8096 38 1 0.3209 -3.3927 5.3793 39 1 0.3316 -2.2624 4.0009 40 1 -0.3963 1.8339 6.0630 41 1 0.4072 0.8272 7.2918 42 1 -2.0077 -0.4340 6.5478 43 1 -4.9855 0.9491 9.6435 44 1 1.5214 1.4333 4.5957 45 1 2.3263 0.2506 5.6543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201320371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:29 Heat of formation + Delta-G solvation = -217.471528 kcal Electronic energy + Delta-G solvation = -31138.374404 eV Core-core repulsion = 26355.603516 eV Total energy + Delta-G solvation = -4782.770888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.49731 -47.97919 -47.95307 -40.91903 -38.91271 -35.97480 -35.49942 -34.76282 -32.95282 -31.18433 -29.98271 -28.24868 -26.87215 -26.52672 -25.13285 -22.72591 -21.82356 -21.62168 -21.07171 -19.44039 -18.88970 -18.61678 -18.14429 -17.69659 -17.00625 -16.69034 -16.50532 -16.22765 -15.45122 -15.10500 -14.89551 -14.67028 -14.40799 -14.39184 -14.30519 -14.13552 -14.09783 -13.95671 -13.65127 -13.53858 -13.32831 -13.04504 -12.80751 -12.62820 -12.43014 -12.17225 -11.98914 -11.83937 -11.72186 -11.66826 -11.45944 -11.24939 -10.95174 -10.83300 -10.41228 -10.10363 -9.98132 -9.58484 -9.54312 -8.85905 -8.75794 -7.16875 -5.71502 -3.06045 2.23262 2.30029 2.66396 3.37679 3.43151 3.48018 3.49862 3.55480 3.65995 3.77306 4.10416 4.30825 4.35585 4.43316 4.54480 4.65647 4.71979 4.78307 4.96862 5.00897 5.05565 5.16190 5.17439 5.28867 5.34952 5.42478 5.43671 5.51573 5.58346 5.66468 5.75510 5.82397 5.91832 5.93632 5.98566 6.30371 6.54101 6.65497 6.97857 7.80350 7.84036 8.04473 8.47567 9.27321 9.99765 10.20490 11.46988 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002833 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.847561 B = 9882.201851 C =10431.823385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.144 4.144 5 C 0.513 3.487 6 O -0.525 6.525 7 N -0.607 5.607 8 C 0.102 3.898 9 C -0.167 4.167 10 C 0.072 3.928 11 O -0.371 6.371 12 C 0.085 3.915 13 H 0.051 0.949 14 C 0.171 3.829 15 N -0.749 5.749 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.936 5.936 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.291 1.291 24 C 0.081 3.919 25 C 0.453 3.547 26 F -0.183 7.183 27 F -0.180 7.180 28 F -0.185 7.185 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.364 0.636 43 H 0.259 0.741 44 H 0.097 0.903 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.832 -8.859 -21.310 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 H 0.142 0.858 4 C -0.184 4.184 5 C 0.300 3.700 6 O -0.402 6.402 7 N -0.340 5.340 8 C -0.020 4.020 9 C -0.205 4.205 10 C -0.005 4.005 11 O -0.289 6.289 12 C 0.025 3.975 13 H 0.069 0.931 14 C 0.043 3.957 15 N -0.395 5.395 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.584 5.584 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.200 1.200 23 H -0.218 1.218 24 C -0.042 4.042 25 C 0.399 3.601 26 F -0.164 7.164 27 F -0.162 7.162 28 F -0.166 7.166 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.197 0.803 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.446 -8.188 -21.021 29.141 hybrid contribution -0.290 -1.326 -0.990 1.680 sum 18.156 -9.514 -22.012 30.078 Atomic orbital electron populations 1.22026 0.90641 1.03545 1.05567 1.22192 1.00566 1.01690 0.89330 0.85826 1.21782 1.03804 1.00780 0.92054 1.20298 0.79530 0.85710 0.84418 1.90731 1.39071 1.24276 1.86083 1.47928 1.55379 1.24519 1.06194 1.22059 0.95398 0.84353 1.00174 1.22506 0.98145 1.00393 0.99501 1.22143 0.92924 0.90985 0.94435 1.86439 1.88112 1.15578 1.38744 1.22321 0.94216 0.83503 0.97503 0.93102 1.20594 0.88195 0.93760 0.93173 1.42549 1.18758 1.32328 1.45869 1.19061 0.99745 1.07630 1.10671 0.89196 1.24645 0.97308 0.98689 0.98523 1.69707 1.16476 1.41301 1.30929 0.86543 0.79230 0.84296 0.78602 1.21204 1.19981 1.21782 1.22416 0.97613 0.97241 0.86973 1.20644 0.75310 0.77726 0.86387 1.93173 1.88434 1.37960 1.96834 1.93187 1.88434 1.80705 1.53851 1.93177 1.30210 1.96435 1.96824 0.91755 0.88148 0.91197 0.87616 0.87521 0.91062 0.89899 0.89692 0.89509 0.89241 0.93536 0.93864 0.94753 0.80273 0.93122 0.88504 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.69 37.16 0.32 -1.09 16 2 C -0.12 -0.93 2.01 -90.62 -0.18 -1.11 16 3 H 0.12 0.99 7.96 -51.93 -0.41 0.57 16 4 C -0.14 -1.02 3.27 -27.88 -0.09 -1.11 16 5 C 0.51 5.39 7.35 -10.99 -0.08 5.31 16 6 O -0.53 -7.35 13.39 5.56 0.07 -7.27 16 7 N -0.61 -6.07 2.19 -172.53 -0.38 -6.45 16 8 C 0.10 0.69 6.00 -3.19 -0.02 0.67 16 9 C -0.17 -1.30 5.79 -27.17 -0.16 -1.46 16 10 C 0.07 0.81 6.37 36.42 0.23 1.04 16 11 O -0.37 -5.91 9.18 -26.53 -0.24 -6.16 16 12 C 0.08 1.35 2.73 -25.83 -0.07 1.28 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 14 C 0.17 3.38 5.95 -4.05 -0.02 3.36 16 15 N -0.75 -18.62 5.29 -59.91 -0.32 -18.94 16 16 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.94 -30.01 13.97 55.49 0.78 -29.23 16 20 Si 0.88 22.78 27.74 -169.99 -4.72 18.06 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.27 -6.74 6.51 56.52 0.37 -6.37 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 C 0.08 1.01 4.86 -3.88 -0.02 0.99 16 25 C 0.45 3.65 2.69 37.16 0.10 3.75 16 26 F -0.18 -1.54 16.37 2.25 0.04 -1.50 16 27 F -0.18 -1.65 16.80 2.25 0.04 -1.61 16 28 F -0.19 -1.52 16.71 2.25 0.04 -1.48 16 29 H 0.06 0.52 7.80 -51.94 -0.41 0.11 16 30 H 0.10 1.11 5.95 -51.93 -0.31 0.80 16 31 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 32 H 0.11 0.56 7.56 -51.93 -0.39 0.16 16 33 H 0.11 0.62 7.21 -51.93 -0.37 0.24 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.39 5.88 -51.93 -0.31 0.08 16 36 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.51 7.40 -51.93 -0.38 0.12 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.36 9.01 5.39 -40.82 -0.22 8.79 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.10 1.29 7.27 -51.92 -0.38 0.91 16 45 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -34.57 365.62 -5.98 -40.55 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.55 Total: 4.05 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.24 Total: 4.47 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.08 Total: -54.62 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.17 Total: -13.43 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.72 Total: 18.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.57 -5.98 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201320371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.923 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds