Wall clock time and date at job start Tue Mar 31 2020 20:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47662 * 2 1 4 4 C 1.52997 * 109.47181 * 120.00721 * 2 1 3 5 5 C 1.50703 * 109.47046 * 294.99514 * 4 2 1 6 6 O 1.21282 * 119.99821 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00100 * 180.02562 * 5 4 2 8 8 C 1.47509 * 118.75651 * 359.97438 * 7 5 4 9 9 C 1.53573 * 111.02801 * 221.62812 * 8 7 5 10 10 C 1.51543 * 109.58098 * 39.97825 * 9 8 7 11 11 O 1.42153 * 108.76490 * 268.60230 * 10 9 8 12 12 C 1.38012 * 119.43841 * 87.22025 * 11 10 9 13 13 H 1.09003 * 109.47164 * 56.57704 * 12 11 10 14 14 C 1.52996 * 109.46845 * 176.57193 * 12 11 10 15 15 N 1.46493 * 109.47400 * 300.00171 * 14 12 11 16 16 C 1.36936 * 120.00314 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.45121 * 118.76017 * 180.02562 * 7 5 4 25 25 C 1.53009 * 109.46800 * 240.00457 * 2 1 3 26 26 F 1.39897 * 109.47075 * 300.00068 * 25 2 1 27 27 F 1.39899 * 109.47106 * 60.00042 * 25 2 1 28 28 F 1.39894 * 109.46879 * 180.02562 * 25 2 1 29 29 H 1.08989 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46942 * 299.99966 * 1 2 3 31 31 H 1.09004 * 109.46989 * 59.99187 * 1 2 3 32 32 H 1.09001 * 109.47238 * 174.99647 * 4 2 1 33 33 H 1.08994 * 109.47401 * 54.99729 * 4 2 1 34 34 H 1.09004 * 109.16479 * 101.23322 * 8 7 5 35 35 H 1.08997 * 109.16868 * 342.02584 * 8 7 5 36 36 H 1.09002 * 109.45519 * 279.94737 * 9 8 7 37 37 H 1.08994 * 109.43673 * 160.00314 * 9 8 7 38 38 H 1.08999 * 109.58353 * 148.81421 * 10 9 8 39 39 H 1.09003 * 109.58547 * 28.38287 * 10 9 8 40 40 H 1.09004 * 109.47066 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47234 * 60.00945 * 14 12 11 42 42 H 0.97000 * 120.00040 * 0.02562 * 15 14 12 43 43 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 44 44 H 1.09007 * 109.45883 * 330.68345 * 24 7 5 45 45 H 1.08997 * 109.45898 * 210.73029 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4766 6 8 1.0110 1.0868 2.3634 7 7 1.9854 -0.3917 3.7000 8 6 2.7516 -1.6477 3.8058 9 6 2.2307 -2.5153 4.9610 10 6 0.7172 -2.4496 5.0031 11 8 0.3294 -1.3906 5.8684 12 6 0.2076 -0.1120 5.3633 13 1 -0.4992 -0.1149 4.5336 14 6 -0.2996 0.8242 6.4620 15 7 -1.6059 0.3594 6.9350 16 6 -2.2594 1.0446 7.9243 17 1 -1.8120 1.9278 8.3557 18 6 -3.4970 0.6038 8.3727 19 7 -4.1226 1.2593 9.3274 20 14 -4.2707 -0.9242 7.6271 21 1 -5.1131 -0.5368 6.4672 22 1 -3.2014 -1.8501 7.1750 23 1 -5.1126 -1.6005 8.6465 24 6 1.5871 0.3787 4.8636 25 6 2.0399 -0.7212 -1.2494 26 9 1.5735 -2.0401 -1.2495 27 9 1.5736 -0.0616 -2.3916 28 9 3.4389 -0.7217 -1.2491 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 3.1263 -0.7997 1.2054 33 1 1.6054 -1.7199 1.2950 34 1 3.8016 -1.4128 3.9801 35 1 2.6600 -2.2026 2.8721 36 1 2.6363 -2.1468 5.9033 37 1 2.5451 -3.5478 4.8096 38 1 0.3209 -3.3927 5.3793 39 1 0.3316 -2.2624 4.0009 40 1 -0.3963 1.8339 6.0630 41 1 0.4072 0.8272 7.2918 42 1 -2.0077 -0.4340 6.5478 43 1 -4.9855 0.9491 9.6435 44 1 1.5214 1.4333 4.5957 45 1 2.3263 0.2506 5.6543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201320371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:28 Heat of formation + Delta-G solvation = -240.432116 kcal Electronic energy + Delta-G solvation = -31139.370050 eV Core-core repulsion = 26355.603516 eV Total energy + Delta-G solvation = -4783.766534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.13419 -48.62205 -48.58839 -41.78052 -39.92544 -37.06319 -36.44352 -36.07362 -34.32513 -32.99323 -31.00355 -29.35997 -27.67107 -27.21447 -26.49846 -24.23271 -23.00112 -22.35878 -22.29494 -20.16168 -19.81094 -19.54683 -19.28805 -18.79800 -17.93755 -17.60463 -17.50568 -17.04886 -16.47567 -16.38940 -15.88952 -15.69217 -15.50645 -15.17629 -15.04168 -15.01630 -14.87662 -14.78376 -14.74952 -14.68889 -14.29429 -14.12471 -14.04760 -13.82471 -13.53444 -13.44136 -13.10934 -12.85680 -12.64786 -12.49083 -12.38737 -12.36934 -12.25335 -12.08507 -11.95196 -11.82216 -11.46919 -11.03453 -10.86036 -10.57635 -9.66699 -9.32120 -8.04228 -5.37284 1.36029 1.39156 1.47473 1.48374 1.61282 1.95147 2.47510 2.68927 2.74842 2.93871 3.03736 3.27569 3.43924 3.49175 3.69336 3.79502 3.84366 3.96287 4.04594 4.07561 4.14529 4.26268 4.29672 4.44682 4.45896 4.48390 4.51167 4.68652 4.73418 4.77318 4.86371 4.87656 4.88780 5.07372 5.12980 5.17952 5.24197 5.50347 5.72343 6.19148 6.23688 6.71983 7.05352 7.06733 7.81591 8.01718 9.17324 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002833 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.847561 B = 9882.201851 C =10431.823385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.568 6.568 7 N -0.607 5.607 8 C 0.097 3.903 9 C -0.159 4.159 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.101 3.899 13 H 0.032 0.968 14 C 0.164 3.836 15 N -0.753 5.753 16 C -0.235 4.235 17 H 0.059 0.941 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.255 1.255 23 H -0.291 1.291 24 C 0.093 3.907 25 C 0.460 3.540 26 F -0.182 7.182 27 F -0.188 7.188 28 F -0.183 7.183 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.366 0.634 43 H 0.259 0.741 44 H 0.083 0.917 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.868 -11.700 -23.371 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 H 0.138 0.862 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.447 6.447 7 N -0.339 5.339 8 C -0.023 4.023 9 C -0.197 4.197 10 C -0.014 4.014 11 O -0.319 6.319 12 C 0.041 3.959 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.399 5.399 16 C -0.366 4.366 17 H 0.077 0.923 18 C -0.254 4.254 19 N -0.634 5.634 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.179 1.179 23 H -0.217 1.217 24 C -0.031 4.031 25 C 0.406 3.594 26 F -0.164 7.164 27 F -0.170 7.170 28 F -0.164 7.164 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.199 0.801 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.549 -11.064 -23.118 32.849 hybrid contribution -0.864 -0.403 -0.336 1.011 sum 19.685 -11.467 -23.454 32.696 Atomic orbital electron populations 1.21955 0.91566 1.03672 1.04377 1.22126 0.99773 1.01782 0.89805 0.86205 1.21821 1.05558 1.00737 0.89508 1.20904 0.78604 0.85367 0.85351 1.90725 1.40937 1.26333 1.86715 1.48015 1.55282 1.25401 1.05169 1.22386 0.95894 0.82826 1.01238 1.22439 0.95222 1.02568 0.99455 1.22458 0.95582 0.89517 0.93858 1.86358 1.88855 1.16033 1.40649 1.21917 0.95715 0.83461 0.94814 0.94971 1.20750 0.86119 0.94897 0.94488 1.42559 1.20305 1.32041 1.44949 1.19069 0.99886 1.06745 1.10935 0.92315 1.25488 0.98073 1.02479 0.99407 1.69882 1.17063 1.43509 1.32926 0.85397 0.78472 0.80254 0.77661 1.20527 1.17937 1.21737 1.22070 0.95852 0.96794 0.88401 1.20540 0.75278 0.77558 0.85996 1.93176 1.88451 1.37929 1.96811 1.93176 1.88558 1.80906 1.54318 1.93182 1.30052 1.96422 1.96793 0.90945 0.90607 0.91099 0.84868 0.85447 0.88822 0.86944 0.90880 0.86224 0.88584 0.93245 0.94181 0.94738 0.80074 0.93241 0.89867 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.69 71.98 0.63 -2.00 16 2 C -0.11 -1.58 2.01 -10.79 -0.02 -1.60 16 3 H 0.12 1.77 7.96 -2.39 -0.02 1.75 16 4 C -0.14 -1.48 3.27 29.85 0.10 -1.38 16 5 C 0.51 9.71 7.35 87.66 0.64 10.35 16 6 O -0.57 -15.79 13.39 -3.04 -0.04 -15.83 16 7 N -0.61 -10.62 2.19 -818.15 -1.79 -12.42 16 8 C 0.10 0.88 6.00 86.38 0.52 1.40 16 9 C -0.16 -1.86 5.79 30.31 0.18 -1.68 16 10 C 0.06 1.22 6.37 71.50 0.46 1.68 16 11 O -0.40 -12.25 9.18 -117.83 -1.08 -13.33 16 12 C 0.10 3.20 2.73 31.18 0.09 3.28 16 13 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 14 C 0.16 6.64 5.95 86.38 0.51 7.15 16 15 N -0.75 -37.82 5.29 -343.47 -1.82 -39.63 16 16 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 17 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 18 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 19 N -0.98 -64.76 13.97 21.65 0.30 -64.46 16 20 Si 0.96 47.46 27.74 68.60 1.90 49.36 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 22 H -0.25 -11.70 6.51 99.48 0.65 -11.05 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 24 C 0.09 2.23 4.86 87.22 0.42 2.65 16 25 C 0.46 6.30 2.69 71.99 0.19 6.49 16 26 F -0.18 -2.53 16.37 44.97 0.74 -1.80 16 27 F -0.19 -3.13 16.80 44.97 0.76 -2.37 16 28 F -0.18 -2.47 16.71 44.97 0.75 -1.72 16 29 H 0.07 1.05 7.80 -2.39 -0.02 1.03 16 30 H 0.08 1.69 5.95 -2.38 -0.01 1.67 16 31 H 0.07 1.12 7.80 -2.38 -0.02 1.10 16 32 H 0.13 0.76 7.56 -2.39 -0.02 0.75 16 33 H 0.13 0.90 7.21 -2.39 -0.02 0.88 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.11 0.40 5.88 -2.39 -0.01 0.38 16 36 H 0.07 1.08 8.01 -2.39 -0.02 1.06 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 0.94 7.40 -2.39 -0.02 0.93 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.37 17.94 5.39 -92.71 -0.50 17.44 16 43 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 44 H 0.08 2.22 7.27 -2.38 -0.02 2.21 16 45 H 0.10 2.10 8.11 -2.39 -0.02 2.08 16 Total: -1.00 -77.78 365.62 5.23 -72.55 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.46 Total: 19.93 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.06 Total: 9.72 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -3.31 Total: -116.51 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.12 Total: -29.16 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 2.24 Total: -5.88 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.36 kcal Total: -77.78 5.23 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201320371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.887 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds