Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47323 * 2 1 4 4 C 1.50703 * 109.46959 * 119.99595 * 2 1 3 5 5 N 1.31799 * 119.12076 * 73.18852 * 4 2 1 6 6 C 1.32337 * 120.81393 * 179.75817 * 5 4 2 7 7 C 1.38594 * 119.10413 * 0.50747 * 6 5 4 8 8 C 1.38596 * 118.40179 * 359.75410 * 7 6 5 9 9 N 1.31798 * 119.12392 * 253.46335 * 4 2 1 10 10 N 1.46897 * 109.47422 * 239.99747 * 2 1 3 11 11 C 1.46899 * 110.99859 * 57.02022 * 10 2 1 12 12 C 1.46897 * 110.99976 * 180.97656 * 10 2 1 13 13 C 1.53008 * 109.46892 * 170.00273 * 12 10 2 14 14 C 1.52994 * 109.46803 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46802 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99774 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99715 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.46780 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99792 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00272 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00387 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47141 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47159 * 119.99959 * 24 22 20 27 27 H 1.48496 * 109.47272 * 240.00238 * 24 22 20 28 28 H 1.08997 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47143 * 300.00400 * 1 2 3 30 30 H 1.08999 * 109.46920 * 60.00375 * 1 2 3 31 31 H 1.08004 * 120.44424 * 180.28005 * 6 5 4 32 32 H 1.07996 * 120.79718 * 179.77198 * 7 6 5 33 33 H 1.08000 * 120.45018 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46906 * 178.05251 * 11 10 2 35 35 H 1.09001 * 109.47030 * 58.04901 * 11 10 2 36 36 H 1.09003 * 109.46960 * 298.04707 * 11 10 2 37 37 H 1.09001 * 109.47196 * 289.99663 * 12 10 2 38 38 H 1.08992 * 109.47235 * 50.00284 * 12 10 2 39 39 H 1.09001 * 109.46702 * 299.99692 * 13 12 10 40 40 H 1.08988 * 109.47250 * 59.99450 * 13 12 10 41 41 H 1.09001 * 109.47331 * 299.99418 * 14 13 12 42 42 H 1.09000 * 109.47452 * 60.00185 * 14 13 12 43 43 H 0.96997 * 120.00340 * 0.02562 * 15 14 13 44 44 H 1.08992 * 109.47313 * 300.00242 * 18 16 15 45 45 H 1.09000 * 109.46570 * 60.00455 * 18 16 15 46 46 H 0.97000 * 119.99838 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.9322 -2.0227 1.2994 6 6 2.3667 -2.6810 2.3620 7 6 2.9228 -1.9706 3.4142 8 6 3.0061 -0.5913 3.3073 9 7 2.5551 -0.0022 2.2115 10 7 2.0198 -0.6925 -1.1994 11 6 1.4915 -0.0688 -2.4199 12 6 3.4880 -0.7323 -1.2216 13 6 3.9560 -1.6664 -2.3395 14 6 5.4852 -1.7073 -2.3631 15 7 5.9332 -2.6021 -3.4331 16 6 7.2506 -2.7944 -3.6433 17 8 8.0651 -2.2271 -2.9464 18 6 7.7115 -3.7153 -4.7437 19 16 9.5206 -3.7637 -4.7716 20 6 9.7761 -4.8795 -6.1112 21 1 8.9291 -5.3002 -6.6327 22 6 11.0660 -5.2178 -6.4962 23 7 12.0984 -4.7047 -5.8610 24 14 11.3369 -6.4013 -7.9158 25 1 10.0235 -6.8325 -8.4583 26 1 12.1146 -5.7233 -8.9840 27 1 12.0879 -7.5884 -7.4343 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.2858 -3.7569 2.4102 32 1 3.2827 -2.4797 4.2960 33 1 3.4330 -0.0051 4.1076 34 1 1.8970 -0.5793 -3.2935 35 1 1.7811 0.9816 -2.4458 36 1 0.4042 -0.1462 -2.4261 37 1 3.8761 0.2705 -1.3999 38 1 3.8561 -1.0994 -0.2636 39 1 3.5680 -2.6692 -2.1613 40 1 3.5879 -1.2994 -3.2975 41 1 5.8729 -0.7043 -2.5416 42 1 5.8537 -2.0742 -1.4051 43 1 5.2819 -3.0555 -3.9908 44 1 7.3243 -4.7182 -4.5642 45 1 7.3426 -3.3495 -5.7019 46 1 12.9999 -4.9414 -6.1298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234155283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = 17.741723 kcal Electronic energy + Delta-G solvation = -25695.140643 eV Core-core repulsion = 21939.471729 eV Total energy + Delta-G solvation = -3755.668914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51361 -39.21034 -38.44588 -35.34537 -34.05780 -33.35385 -32.41588 -31.85666 -30.20340 -28.86553 -27.34588 -25.51480 -25.02759 -24.79671 -23.88932 -21.57890 -20.94166 -20.16232 -17.94471 -17.83922 -17.53650 -16.48054 -16.22352 -16.14215 -15.78759 -15.50778 -15.14269 -14.90572 -14.79271 -14.50567 -14.42974 -13.88293 -13.84925 -13.61894 -13.12139 -12.84224 -12.78266 -12.65961 -12.52104 -12.12653 -11.82355 -11.75976 -11.63661 -11.57132 -11.17596 -11.08756 -11.06214 -11.00489 -10.89500 -10.74189 -9.92943 -9.79180 -9.56187 -9.37549 -9.06594 -8.85099 -8.69044 -8.21329 -6.48437 -6.20574 -3.90845 0.47800 0.72567 3.00907 3.13658 3.18373 3.22442 3.29591 3.34572 3.39869 3.52012 3.77521 3.96529 4.21588 4.21946 4.51620 4.62378 4.69798 4.70336 4.73782 4.85019 4.89046 4.99086 5.10243 5.14509 5.15139 5.23779 5.24833 5.31839 5.34818 5.42545 5.44755 5.57393 5.63010 5.69734 5.80928 5.89545 5.96714 5.97267 6.05060 6.16556 6.57084 6.59071 6.67339 6.70560 7.61207 7.75033 7.75422 8.36801 8.65190 9.24835 10.86937 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.001768 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.580091 B =15836.106122 C =16562.944569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 H 0.068 0.932 4 C 0.323 3.677 5 N -0.485 5.485 6 C 0.146 3.854 7 C -0.231 4.231 8 C 0.147 3.853 9 N -0.520 5.520 10 N -0.522 5.522 11 C 0.018 3.982 12 C 0.063 3.937 13 C -0.124 4.124 14 C 0.123 3.877 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.168 0.832 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.982 8.472 15.754 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.041 3.959 3 H 0.086 0.914 4 C 0.055 3.945 5 N -0.198 5.198 6 C -0.020 4.020 7 C -0.253 4.253 8 C -0.019 4.019 9 N -0.234 5.234 10 N -0.247 5.247 11 C -0.129 4.129 12 C -0.066 4.066 13 C -0.162 4.162 14 C -0.001 4.001 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.303 4.303 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.186 0.814 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.932 9.432 16.156 31.975 hybrid contribution -0.304 -1.326 -1.002 1.689 sum -26.236 8.106 15.154 31.364 Atomic orbital electron populations 1.21859 0.92164 1.03613 1.02288 1.20266 0.96218 0.94396 0.85038 0.91440 1.22914 0.90791 0.87034 0.93766 1.68320 1.16812 1.09657 1.25049 1.23381 0.89670 1.01239 0.87741 1.22974 1.03283 0.96850 1.02194 1.23217 0.91646 0.92581 0.94462 1.68206 1.11366 1.41914 1.01933 1.61901 1.08467 1.53213 1.01139 1.22538 1.01163 0.97022 0.92221 1.21955 0.86929 0.98367 0.99322 1.21754 0.94228 1.01337 0.98903 1.21164 0.93343 0.94449 0.91179 1.45972 1.07456 1.49339 1.36488 1.20320 0.81593 0.81710 0.84697 1.90697 1.52826 1.48242 1.47583 1.23527 1.07042 1.00771 0.99002 1.85401 0.91955 1.61028 1.45140 1.22913 0.95142 1.31267 1.18909 0.90861 1.25005 0.94969 0.96458 0.97260 1.70035 0.98578 1.42039 1.39661 0.86107 0.78360 0.80014 0.80951 1.19607 1.20583 1.20574 0.90760 0.92130 0.91128 0.81381 0.83431 0.81450 0.90489 0.95360 0.90701 0.94315 0.91468 0.90157 0.91007 0.91845 0.91952 0.76783 0.89206 0.89218 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.84 37.16 0.33 -0.63 16 2 C 0.15 1.29 2.47 -68.86 -0.17 1.12 16 3 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 4 C 0.32 3.18 4.88 -157.19 -0.77 2.41 16 5 N -0.49 -4.79 10.07 -10.72 -0.11 -4.89 16 6 C 0.15 1.08 11.30 -17.20 -0.19 0.89 16 7 C -0.23 -1.38 10.17 -39.32 -0.40 -1.78 16 8 C 0.15 1.05 11.30 -17.21 -0.19 0.85 16 9 N -0.52 -5.05 10.32 -10.72 -0.11 -5.16 16 10 N -0.52 -4.51 4.46 -236.28 -1.05 -5.57 16 11 C 0.02 0.12 8.91 60.06 0.54 0.66 16 12 C 0.06 0.60 4.79 -3.82 -0.02 0.58 16 13 C -0.12 -1.16 5.26 -26.73 -0.14 -1.30 16 14 C 0.12 1.54 5.67 -4.04 -0.02 1.51 16 15 N -0.74 -10.30 5.56 -60.29 -0.33 -10.64 16 16 C 0.53 10.25 7.85 -10.98 -0.09 10.17 16 17 O -0.52 -12.21 15.86 5.56 0.09 -12.12 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 6.40 -51.93 -0.33 0.04 16 31 H 0.17 0.79 8.06 -52.48 -0.42 0.36 16 32 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.08 0.50 6.22 -51.93 -0.32 0.17 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.42 6.36 -51.93 -0.33 0.09 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.07 0.75 6.67 -51.93 -0.35 0.41 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.59 6.44 -51.94 -0.33 0.26 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -36.90 395.77 -9.82 -46.71 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.05 Total: 0.28 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.71 Total: -1.54 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.87 Total: -51.92 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.90 -9.82 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234155283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.455 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds