Wall clock time and date at job start Tue Mar 31 2020 20:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47323 * 2 1 4 4 C 1.50703 * 109.46959 * 119.99595 * 2 1 3 5 5 N 1.31799 * 119.12076 * 73.18852 * 4 2 1 6 6 C 1.32337 * 120.81393 * 179.75817 * 5 4 2 7 7 C 1.38594 * 119.10413 * 0.50747 * 6 5 4 8 8 C 1.38596 * 118.40179 * 359.75410 * 7 6 5 9 9 N 1.31798 * 119.12392 * 253.46335 * 4 2 1 10 10 N 1.46897 * 109.47422 * 239.99747 * 2 1 3 11 11 C 1.46899 * 110.99859 * 57.02022 * 10 2 1 12 12 C 1.46897 * 110.99976 * 180.97656 * 10 2 1 13 13 C 1.53008 * 109.46892 * 170.00273 * 12 10 2 14 14 C 1.52994 * 109.46803 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46802 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99774 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99715 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.46780 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99792 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00272 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00387 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47141 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47159 * 119.99959 * 24 22 20 27 27 H 1.48496 * 109.47272 * 240.00238 * 24 22 20 28 28 H 1.08997 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47143 * 300.00400 * 1 2 3 30 30 H 1.08999 * 109.46920 * 60.00375 * 1 2 3 31 31 H 1.08004 * 120.44424 * 180.28005 * 6 5 4 32 32 H 1.07996 * 120.79718 * 179.77198 * 7 6 5 33 33 H 1.08000 * 120.45018 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46906 * 178.05251 * 11 10 2 35 35 H 1.09001 * 109.47030 * 58.04901 * 11 10 2 36 36 H 1.09003 * 109.46960 * 298.04707 * 11 10 2 37 37 H 1.09001 * 109.47196 * 289.99663 * 12 10 2 38 38 H 1.08992 * 109.47235 * 50.00284 * 12 10 2 39 39 H 1.09001 * 109.46702 * 299.99692 * 13 12 10 40 40 H 1.08988 * 109.47250 * 59.99450 * 13 12 10 41 41 H 1.09001 * 109.47331 * 299.99418 * 14 13 12 42 42 H 1.09000 * 109.47452 * 60.00185 * 14 13 12 43 43 H 0.96997 * 120.00340 * 0.02562 * 15 14 13 44 44 H 1.08992 * 109.47313 * 300.00242 * 18 16 15 45 45 H 1.09000 * 109.46570 * 60.00455 * 18 16 15 46 46 H 0.97000 * 119.99838 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.9322 -2.0227 1.2994 6 6 2.3667 -2.6810 2.3620 7 6 2.9228 -1.9706 3.4142 8 6 3.0061 -0.5913 3.3073 9 7 2.5551 -0.0022 2.2115 10 7 2.0198 -0.6925 -1.1994 11 6 1.4915 -0.0688 -2.4199 12 6 3.4880 -0.7323 -1.2216 13 6 3.9560 -1.6664 -2.3395 14 6 5.4852 -1.7073 -2.3631 15 7 5.9332 -2.6021 -3.4331 16 6 7.2506 -2.7944 -3.6433 17 8 8.0651 -2.2271 -2.9464 18 6 7.7115 -3.7153 -4.7437 19 16 9.5206 -3.7637 -4.7716 20 6 9.7761 -4.8795 -6.1112 21 1 8.9291 -5.3002 -6.6327 22 6 11.0660 -5.2178 -6.4962 23 7 12.0984 -4.7047 -5.8610 24 14 11.3369 -6.4013 -7.9158 25 1 10.0235 -6.8325 -8.4583 26 1 12.1146 -5.7233 -8.9840 27 1 12.0879 -7.5884 -7.4343 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.2858 -3.7569 2.4102 32 1 3.2827 -2.4797 4.2960 33 1 3.4330 -0.0051 4.1076 34 1 1.8970 -0.5793 -3.2935 35 1 1.7811 0.9816 -2.4458 36 1 0.4042 -0.1462 -2.4261 37 1 3.8761 0.2705 -1.3999 38 1 3.8561 -1.0994 -0.2636 39 1 3.5680 -2.6692 -2.1613 40 1 3.5879 -1.2994 -3.2975 41 1 5.8729 -0.7043 -2.5416 42 1 5.8537 -2.0742 -1.4051 43 1 5.2819 -3.0555 -3.9908 44 1 7.3243 -4.7182 -4.5642 45 1 7.3426 -3.3495 -5.7019 46 1 12.9999 -4.9414 -6.1298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234155283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:53 Heat of formation + Delta-G solvation = -10.019961 kcal Electronic energy + Delta-G solvation = -25696.344480 eV Core-core repulsion = 21939.471729 eV Total energy + Delta-G solvation = -3756.872751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08692 -40.65384 -39.17190 -36.50262 -34.64920 -34.58831 -34.17989 -32.71341 -31.22288 -30.00192 -28.05456 -27.65041 -25.72861 -25.47084 -24.62120 -22.44181 -21.84043 -21.34489 -19.82343 -18.54097 -18.17880 -17.78200 -17.34069 -17.13323 -16.88307 -16.61421 -16.41849 -16.08267 -15.78313 -15.61964 -15.35389 -15.03565 -14.72866 -14.44426 -14.40047 -14.30452 -13.76436 -13.50232 -13.27622 -13.21267 -13.16225 -12.91329 -12.68299 -12.64182 -12.48849 -12.43473 -12.23535 -11.80662 -11.72129 -11.69940 -11.62807 -11.16084 -10.99306 -10.45857 -10.27903 -10.16650 -10.16400 -9.34056 -8.67614 -8.35054 -6.13356 -0.07244 0.17405 1.26507 1.41672 1.46845 1.58328 1.58758 2.20956 2.27448 2.61433 2.83776 2.94010 2.99138 3.31593 3.39051 3.77228 3.82260 3.89404 3.97732 4.07256 4.10018 4.17275 4.21766 4.27443 4.29006 4.39085 4.47662 4.49307 4.50685 4.56191 4.68443 4.70798 4.76926 4.84781 4.91052 5.04430 5.12998 5.14602 5.28026 5.40526 5.42192 5.45789 5.95153 5.99576 6.12490 6.20035 6.49072 7.06271 7.16197 7.22196 8.74500 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.001768 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.580091 B =15836.106122 C =16562.944569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.149 3.851 3 H 0.061 0.939 4 C 0.306 3.694 5 N -0.509 5.509 6 C 0.130 3.870 7 C -0.221 4.221 8 C 0.133 3.867 9 N -0.546 5.546 10 N -0.526 5.526 11 C 0.016 3.984 12 C 0.069 3.931 13 C -0.106 4.106 14 C 0.126 3.874 15 N -0.711 5.711 16 C 0.532 3.468 17 O -0.569 6.569 18 C -0.128 4.128 19 S -0.155 6.155 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.192 0.808 32 H 0.180 0.820 33 H 0.194 0.806 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.418 0.582 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.115 7.418 14.939 33.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.079 0.921 4 C 0.038 3.962 5 N -0.223 5.223 6 C -0.035 4.035 7 C -0.242 4.242 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.251 5.251 11 C -0.131 4.131 12 C -0.060 4.060 13 C -0.144 4.144 14 C 0.001 3.999 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.279 4.279 19 S 0.073 5.927 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.208 0.792 32 H 0.198 0.802 33 H 0.211 0.789 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.255 0.745 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.138 8.372 15.339 33.123 hybrid contribution 0.259 -0.958 -0.621 1.170 sum -27.879 7.414 14.718 32.386 Atomic orbital electron populations 1.21794 0.90973 1.03148 1.03112 1.20322 0.97113 0.93855 0.84830 0.92132 1.23082 0.91465 0.87343 0.94297 1.68300 1.17838 1.09799 1.26351 1.23897 0.89504 1.02462 0.87655 1.23309 1.01814 0.96427 1.02699 1.23783 0.91320 0.93671 0.94440 1.68214 1.12284 1.42727 1.02886 1.61905 1.07551 1.53753 1.01918 1.22626 1.01942 0.97135 0.91413 1.21812 0.87874 0.98016 0.98270 1.21599 0.91438 1.01559 0.99818 1.21230 0.95487 0.93397 0.89746 1.45707 1.05890 1.48515 1.36380 1.20132 0.82885 0.81207 0.83991 1.90688 1.54536 1.50234 1.49262 1.23366 1.01214 1.02576 1.00784 1.85602 0.99439 1.61711 1.45994 1.23238 0.95890 1.31230 1.18857 0.89805 1.26163 0.94533 0.98333 1.00317 1.70198 0.99213 1.43753 1.41676 0.84877 0.78868 0.77195 0.76826 1.17944 1.19943 1.19930 0.91739 0.92106 0.89480 0.79154 0.80232 0.78897 0.89940 0.95065 0.89460 0.94653 0.93452 0.89924 0.89085 0.92592 0.93431 0.74470 0.87096 0.86988 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.84 71.98 0.64 -1.07 16 2 C 0.15 2.51 2.47 44.17 0.11 2.62 16 3 H 0.06 1.07 8.11 -2.38 -0.02 1.05 16 4 C 0.31 6.05 4.88 138.75 0.68 6.73 16 5 N -0.51 -9.91 10.07 -187.83 -1.89 -11.80 16 6 C 0.13 1.81 11.30 84.70 0.96 2.76 16 7 C -0.22 -2.32 10.17 22.44 0.23 -2.09 16 8 C 0.13 1.79 11.30 84.70 0.96 2.75 16 9 N -0.55 -10.66 10.32 -187.84 -1.94 -12.60 16 10 N -0.53 -8.59 4.46 -901.46 -4.02 -12.61 16 11 C 0.02 0.18 8.91 127.69 1.14 1.32 16 12 C 0.07 1.28 4.79 86.31 0.41 1.69 16 13 C -0.11 -1.79 5.26 30.59 0.16 -1.63 16 14 C 0.13 3.02 5.67 86.38 0.49 3.51 16 15 N -0.71 -18.56 5.56 -463.05 -2.57 -21.13 16 16 C 0.53 20.19 7.85 87.66 0.69 20.88 16 17 O -0.57 -27.28 15.86 -3.02 -0.05 -27.33 16 18 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 19 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 20 C -0.54 -31.27 9.50 67.95 0.65 -30.63 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.64 5.49 84.86 0.47 1.10 16 23 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 24 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.79 6.40 -2.39 -0.02 0.78 16 31 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.08 0.85 6.22 -2.39 -0.01 0.84 16 35 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.09 0.79 6.36 -2.39 -0.02 0.78 16 37 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.05 1.07 6.67 -2.39 -0.02 1.06 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.23 6.44 -2.39 -0.02 1.22 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.42 7.79 8.47 -92.71 -0.79 7.00 16 44 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 45 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -82.86 395.77 -1.11 -83.98 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.20 Total: 18.43 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 8.01 Total: 3.25 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -10.14 Total: -114.28 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.05 Total: -27.33 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -82.86 -1.11 -83.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234155283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.956 kcal (2) G-P(sol) polarization free energy of solvation -82.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds