Wall clock time and date at job start Tue Mar 31 2020 20:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47110 * 2 1 4 4 N 1.46496 * 109.47379 * 120.00394 * 2 1 3 5 5 C 1.36942 * 120.00078 * 287.70067 * 4 2 1 6 6 H 1.08004 * 119.99319 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00050 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99740 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00412 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46927 * 89.99799 * 9 7 5 11 11 H 1.48494 * 109.47386 * 210.00350 * 9 7 5 12 12 H 1.48505 * 109.46699 * 330.00161 * 9 7 5 13 13 C 1.53005 * 109.47071 * 240.00336 * 2 1 3 14 14 H 1.09007 * 109.69817 * 287.96233 * 13 2 1 15 15 C 1.53188 * 109.58591 * 48.31497 * 13 2 1 16 16 C 1.53045 * 109.31320 * 174.42159 * 15 13 2 17 17 C 1.53067 * 109.65758 * 298.70412 * 16 15 13 18 18 C 1.53194 * 109.29922 * 61.15141 * 17 16 15 19 19 N 1.46925 * 109.58633 * 167.60639 * 13 2 1 20 20 C 1.34771 * 120.63343 * 6.62889 * 19 13 2 21 21 O 1.21578 * 119.99878 * 353.73798 * 20 19 13 22 22 C 1.47704 * 120.00229 * 173.73929 * 20 19 13 23 23 C 1.39675 * 120.15454 * 321.43343 * 22 20 19 24 24 C 1.37846 * 119.92490 * 180.02562 * 23 22 20 25 25 C 1.38452 * 120.24043 * 0.02562 * 24 23 22 26 26 C 1.38381 * 120.31161 * 359.97438 * 25 24 23 27 27 F 1.35101 * 119.96321 * 180.02562 * 26 25 24 28 28 C 1.38544 * 120.07312 * 359.72237 * 26 25 24 29 29 F 1.35104 * 120.12314 * 180.27877 * 28 26 25 30 30 H 1.08994 * 109.47091 * 299.99746 * 1 2 3 31 31 H 1.08999 * 109.46855 * 59.99503 * 1 2 3 32 32 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00531 * 107.69043 * 4 2 1 34 34 H 0.97000 * 119.99961 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.50083 * 294.37157 * 15 13 2 36 36 H 1.08999 * 109.50048 * 54.47563 * 15 13 2 37 37 H 1.09000 * 109.45455 * 58.65887 * 16 15 13 38 38 H 1.09002 * 109.46270 * 178.61320 * 16 15 13 39 39 H 1.08995 * 109.39017 * 301.27455 * 17 16 15 40 40 H 1.09002 * 109.62239 * 181.16741 * 17 16 15 41 41 H 1.08998 * 109.58908 * 185.71496 * 18 17 16 42 42 H 1.09000 * 109.58548 * 65.43762 * 18 17 16 43 43 H 1.08004 * 120.03863 * 0.02562 * 23 22 20 44 44 H 1.07993 * 119.88067 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.84413 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9067 -0.0952 2.4242 6 1 1.4589 0.8838 2.5108 7 6 2.3690 -0.7498 3.5575 8 7 2.2621 -0.1772 4.7378 9 14 3.1428 -2.4434 3.4077 10 1 4.6058 -2.3021 3.1957 11 1 2.8951 -3.2128 4.6534 12 1 2.5426 -3.1616 2.2547 13 6 2.0400 -0.7212 -1.2493 14 1 1.8641 -1.7926 -1.1526 15 6 1.3063 -0.1897 -2.4846 16 6 1.9162 -0.8124 -3.7425 17 6 3.3911 -0.4171 -3.8495 18 6 4.1475 -0.9483 -2.6278 19 7 3.4789 -0.4708 -1.4097 20 6 4.1723 0.1840 -0.4575 21 8 3.5896 0.6730 0.4909 22 6 5.6401 0.3076 -0.5661 23 6 6.4007 -0.7612 -1.0459 24 6 7.7703 -0.6408 -1.1448 25 6 8.3958 0.5360 -0.7696 26 6 7.6519 1.6011 -0.2929 27 9 8.2695 2.7463 0.0707 28 6 6.2740 1.4965 -0.1941 29 9 5.5462 2.5377 0.2658 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4208 -1.5698 1.1182 34 1 2.5848 -0.6348 5.5299 35 1 0.2507 -0.4546 -2.4227 36 1 1.4078 0.8946 -2.5296 37 1 1.8365 -1.8980 -3.6855 38 1 1.3798 -0.4548 -4.6215 39 1 3.4730 0.6692 -3.8841 40 1 3.8196 -0.8438 -4.7564 41 1 5.1748 -0.5843 -2.6473 42 1 4.1458 -2.0382 -2.6423 43 1 5.9162 -1.6808 -1.3391 44 1 8.3577 -1.4678 -1.5154 45 1 9.4692 0.6235 -0.8501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265089008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:04 Heat of formation + Delta-G solvation = -34.159104 kcal Electronic energy + Delta-G solvation = -31517.363700 eV Core-core repulsion = 27173.311060 eV Total energy + Delta-G solvation = -4344.052640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.42757 -48.46526 -40.65202 -38.70983 -37.00982 -35.41706 -32.99770 -32.25144 -31.01436 -30.55439 -30.17869 -28.17796 -25.72067 -24.37864 -23.69568 -23.07409 -22.30231 -20.98149 -20.03373 -19.58984 -17.98237 -17.53418 -17.18703 -16.95955 -16.34423 -15.94832 -15.61351 -15.11410 -15.10240 -14.82887 -14.62474 -14.45764 -14.26258 -14.00232 -13.78285 -13.60059 -13.21041 -12.96493 -12.79882 -12.49677 -12.34060 -12.24756 -12.19915 -12.09658 -11.73839 -11.46481 -11.37564 -11.02741 -10.93970 -10.75190 -10.70876 -10.47585 -10.14275 -9.87478 -9.34087 -9.19376 -8.84447 -8.78900 -8.44376 -8.20498 -6.88276 -5.50674 -2.79094 0.56402 0.78425 2.86139 3.04791 3.45980 3.48910 3.51351 3.55787 3.71322 4.26160 4.35218 4.52822 4.61382 4.71299 4.77243 4.79492 4.86222 4.88114 5.02079 5.26457 5.30121 5.43428 5.49315 5.55432 5.61741 5.65603 5.71853 5.75474 5.79543 5.79980 5.88190 5.94129 5.97278 6.00076 6.02091 6.27433 6.36292 6.38415 6.53907 6.57084 6.76449 7.03720 7.30790 7.67859 8.25125 8.63374 8.69443 9.46013 10.18682 10.38575 11.69639 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.006230 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.470684 B = 4493.091436 C = 6325.478748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.078 0.922 4 N -0.725 5.725 5 C -0.190 4.190 6 H 0.087 0.913 7 C -0.008 4.008 8 N -0.944 5.944 9 Si 0.878 3.122 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.283 1.283 13 C 0.146 3.854 14 H 0.067 0.933 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.098 3.902 19 N -0.610 5.610 20 C 0.520 3.480 21 O -0.417 6.417 22 C -0.124 4.124 23 C -0.080 4.080 24 C -0.111 4.111 25 C -0.114 4.114 26 C 0.059 3.941 27 F -0.127 7.127 28 C 0.119 3.881 29 F -0.107 7.107 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.353 0.647 34 H 0.253 0.747 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -2.666 -22.394 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.096 0.904 4 N -0.367 5.367 5 C -0.321 4.321 6 H 0.105 0.895 7 C -0.201 4.201 8 N -0.595 5.595 9 Si 0.710 3.290 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.209 1.209 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.173 4.173 18 C -0.025 4.025 19 N -0.348 5.348 20 C 0.304 3.696 21 O -0.285 6.285 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.133 4.133 26 C 0.039 3.961 27 F -0.106 7.106 28 C 0.097 3.903 29 F -0.085 7.085 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.185 0.815 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.911 -2.120 -21.591 23.453 hybrid contribution 0.771 -1.026 0.192 1.298 sum 9.682 -3.147 -21.399 23.697 Atomic orbital electron populations 1.22543 0.99117 1.00657 1.00556 1.20584 0.90834 0.97750 0.83832 0.90447 1.42672 1.72557 1.18103 1.03402 1.18918 1.30243 1.00878 0.82061 0.89516 1.24542 1.02323 0.97756 0.95470 1.69686 1.54256 1.38121 0.97460 0.86626 0.79565 0.86591 0.76238 1.21788 1.22217 1.20926 1.21598 0.78364 0.99551 0.96205 0.91482 1.22014 0.99893 1.01144 0.93624 1.21533 0.95388 1.00712 0.98041 1.21926 0.96165 1.01714 0.97450 1.22014 0.97211 0.98843 0.84425 1.47748 1.09129 1.58750 1.19123 1.17983 0.85426 0.82272 0.83916 1.91272 1.66976 1.41175 1.29028 1.20269 0.96243 0.93446 1.02873 1.21441 0.93823 0.98075 0.96530 1.20981 0.94190 0.97386 1.00352 1.21169 1.00969 0.91979 0.99179 1.17571 0.88855 0.84892 1.04793 1.91539 1.82339 1.47135 1.89562 1.17652 0.87599 0.85820 0.99188 1.91629 1.76822 1.54635 1.85386 0.92101 0.94102 0.93851 0.81520 0.93640 0.90250 0.91338 0.91947 0.91895 0.91532 0.91049 0.89327 0.91661 0.83699 0.83882 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.63 37.16 0.32 -2.73 16 2 C 0.18 3.57 1.83 -67.93 -0.12 3.45 16 3 H 0.08 1.76 6.05 -51.96 -0.31 1.45 16 4 N -0.73 -17.83 3.19 -53.42 -0.17 -18.00 16 5 C -0.19 -5.65 8.92 -15.06 -0.13 -5.79 16 6 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 8 N -0.94 -31.55 13.97 55.49 0.78 -30.77 16 9 Si 0.88 23.58 27.74 -169.99 -4.71 18.87 16 10 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 11 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 12 H -0.28 -7.08 6.52 56.52 0.37 -6.72 16 13 C 0.15 2.23 2.60 -67.60 -0.18 2.05 16 14 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 15 C -0.13 -1.51 4.44 -26.61 -0.12 -1.63 16 16 C -0.12 -1.08 5.88 -26.67 -0.16 -1.23 16 17 C -0.13 -1.15 6.09 -26.60 -0.16 -1.31 16 18 C 0.10 0.97 4.83 -3.71 -0.02 0.96 16 19 N -0.61 -8.93 2.97 -166.37 -0.49 -9.42 16 20 C 0.52 9.49 6.93 -12.40 -0.09 9.40 16 21 O -0.42 -9.82 9.52 5.30 0.05 -9.77 16 22 C -0.12 -1.92 5.18 -104.92 -0.54 -2.46 16 23 C -0.08 -0.89 7.37 -39.19 -0.29 -1.18 16 24 C -0.11 -0.97 10.03 -39.65 -0.40 -1.36 16 25 C -0.11 -1.12 10.01 -39.45 -0.40 -1.52 16 26 C 0.06 0.81 7.30 -39.42 -0.29 0.52 16 27 F -0.13 -1.83 17.18 2.25 0.04 -1.79 16 28 C 0.12 1.95 7.25 -38.90 -0.28 1.67 16 29 F -0.11 -2.10 16.13 2.25 0.04 -2.06 16 30 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 31 H 0.04 0.60 6.44 -51.93 -0.33 0.27 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.35 8.67 5.55 -40.82 -0.23 8.44 16 34 H 0.25 8.12 8.31 -40.82 -0.34 7.78 16 35 H 0.08 0.88 6.70 -51.93 -0.35 0.53 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.79 4.69 -51.93 -0.24 0.54 16 42 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 43 H 0.15 1.33 6.42 -52.48 -0.34 0.99 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -36.68 355.56 -8.10 -44.78 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.03 Total: 4.30 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.94 Total: -1.49 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.11 Total: -58.20 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.05 Total: -9.77 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.71 Total: 18.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.68 -8.10 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265089008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.621 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds