Wall clock time and date at job start Tue Mar 31 2020 20:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 N 1.46500 * 109.46767 * 119.99734 * 2 1 3 5 5 C 1.36939 * 119.99712 * 274.99650 * 4 2 1 6 6 H 1.08000 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99697 * 179.73025 * 5 4 2 8 8 N 1.31625 * 120.00169 * 180.27573 * 7 5 4 9 9 Si 1.86802 * 120.00328 * 0.27357 * 7 5 4 10 10 H 1.48501 * 109.47139 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47125 * 210.00225 * 9 7 5 12 12 H 1.48500 * 109.46780 * 330.00187 * 9 7 5 13 13 C 1.53001 * 109.46864 * 239.99324 * 2 1 3 14 14 H 1.08996 * 109.58165 * 53.97951 * 13 2 1 15 15 C 1.53184 * 109.58899 * 293.69099 * 13 2 1 16 16 C 1.53043 * 109.31570 * 185.58157 * 15 13 2 17 17 C 1.53039 * 109.53700 * 61.35990 * 16 15 13 18 18 C 1.53192 * 109.31736 * 298.64066 * 17 16 15 19 19 N 1.46927 * 109.58214 * 174.25952 * 13 2 1 20 20 C 1.34775 * 120.63355 * 353.39416 * 19 13 2 21 21 O 1.21569 * 119.99900 * 3.94017 * 20 19 13 22 22 C 1.47699 * 120.00025 * 183.93976 * 20 19 13 23 23 C 1.39675 * 120.15734 * 37.86845 * 22 20 19 24 24 C 1.37845 * 119.92840 * 179.97438 * 23 22 20 25 25 C 1.38450 * 120.23656 * 359.97438 * 24 23 22 26 26 C 1.38375 * 120.31924 * 0.03365 * 25 24 23 27 27 F 1.35097 * 119.96763 * 179.97438 * 26 25 24 28 28 C 1.38548 * 120.06812 * 359.68886 * 26 25 24 29 29 F 1.35102 * 120.12187 * 180.27590 * 28 26 25 30 30 H 1.08998 * 109.46862 * 305.72184 * 1 2 3 31 31 H 1.08999 * 109.46630 * 65.71995 * 1 2 3 32 32 H 1.08996 * 109.46779 * 185.71929 * 1 2 3 33 33 H 0.97000 * 120.00182 * 95.00231 * 4 2 1 34 34 H 0.96998 * 120.00362 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.49968 * 305.53116 * 15 13 2 36 36 H 1.08996 * 109.50230 * 65.59553 * 15 13 2 37 37 H 1.08998 * 109.46307 * 181.38767 * 16 15 13 38 38 H 1.08999 * 109.45519 * 301.34354 * 16 15 13 39 39 H 1.09006 * 109.49536 * 58.59747 * 17 16 15 40 40 H 1.09005 * 109.49191 * 178.68560 * 17 16 15 41 41 H 1.08999 * 109.58549 * 174.42353 * 18 17 16 42 42 H 1.09004 * 109.58264 * 294.84667 * 18 17 16 43 43 H 1.08004 * 120.03756 * 359.95108 * 23 22 20 44 44 H 1.07997 * 119.88333 * 179.97438 * 24 23 22 45 45 H 1.08007 * 119.84002 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8927 1.0407 2.4241 7 6 2.6064 -0.6630 3.5105 8 7 2.7270 -0.0076 4.6457 9 14 3.0507 -2.4755 3.4269 10 1 4.4850 -2.6176 3.0696 11 1 2.8048 -3.1069 4.7482 12 1 2.2153 -3.1427 2.3963 13 6 2.0400 -0.7214 -1.2492 14 1 1.5924 -0.2751 -2.1371 15 6 1.6645 -2.2046 -1.1750 16 6 2.2956 -2.9463 -2.3556 17 6 3.8195 -2.8294 -2.2778 18 6 4.2195 -1.3532 -2.3646 19 7 3.5028 -0.6041 -1.3230 20 6 4.1743 0.1726 -0.4500 21 8 3.5786 0.7277 0.4528 22 6 5.6340 0.3495 -0.5901 23 6 6.2096 0.4535 -1.8585 24 6 7.5724 0.6190 -1.9838 25 6 8.3734 0.6833 -0.8564 26 6 7.8137 0.5813 0.4050 27 9 8.6021 0.6444 1.5002 28 6 6.4449 0.4204 0.5461 29 9 5.8966 0.3263 1.7773 30 1 -0.3633 0.6000 0.8343 31 1 -0.3632 0.4226 -0.9368 32 1 -0.3633 -1.0225 0.1024 33 1 2.2490 -1.6317 1.1527 34 1 3.0462 -0.4659 5.4388 35 1 2.0339 -2.6272 -0.2405 36 1 0.5803 -2.3081 -1.2174 37 1 2.0096 -3.9975 -2.3188 38 1 1.9449 -2.5073 -3.2895 39 1 4.1686 -3.2461 -1.3330 40 1 4.2691 -3.3775 -3.1059 41 1 5.2942 -1.2562 -2.2106 42 1 3.9517 -0.9590 -3.3449 43 1 5.5878 0.4038 -2.7401 44 1 8.0167 0.6989 -2.9648 45 1 9.4404 0.8135 -0.9620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265089010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:11 Heat of formation + Delta-G solvation = -28.192365 kcal Electronic energy + Delta-G solvation = -32000.805876 eV Core-core repulsion = 27657.011973 eV Total energy + Delta-G solvation = -4343.793903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.25776 -48.23272 -40.60933 -38.66570 -36.92524 -35.38316 -32.81191 -32.16940 -30.94462 -30.47243 -29.88729 -28.46708 -25.63295 -24.08242 -23.68564 -23.05041 -22.50795 -20.97681 -20.15638 -19.07120 -17.75983 -17.38834 -17.19751 -16.90111 -16.21040 -15.84263 -15.56334 -15.02858 -15.01784 -14.61876 -14.51238 -14.42550 -14.13660 -13.79516 -13.77790 -13.62299 -13.18785 -12.90448 -12.69995 -12.42924 -12.25631 -12.15326 -12.06116 -11.91246 -11.61581 -11.50140 -11.32699 -10.93006 -10.77903 -10.71033 -10.59247 -10.50236 -10.14247 -9.88151 -9.24435 -9.10813 -8.74957 -8.68340 -8.42723 -8.06254 -6.85380 -5.43786 -2.72514 0.62475 0.86590 2.92963 3.08872 3.48714 3.53331 3.58800 3.64100 3.81652 4.36143 4.44351 4.57375 4.66549 4.79802 4.84318 4.85173 4.93487 4.96118 5.16303 5.33435 5.36567 5.49755 5.52856 5.58716 5.63377 5.70261 5.78576 5.80934 5.87152 5.88130 5.94820 5.97888 6.01309 6.10416 6.15023 6.33516 6.39740 6.44053 6.63246 6.66989 6.83191 7.00940 7.28750 7.75749 8.34301 8.70690 8.78732 9.53656 10.25942 10.46016 11.76955 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.006791 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.034937 B = 4121.966079 C = 5858.578375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.090 0.910 4 N -0.731 5.731 5 C -0.180 4.180 6 H 0.087 0.913 7 C -0.005 4.005 8 N -0.944 5.944 9 Si 0.869 3.131 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.284 1.284 13 C 0.146 3.854 14 H 0.070 0.930 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.097 3.903 19 N -0.608 5.608 20 C 0.527 3.473 21 O -0.418 6.418 22 C -0.131 4.131 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.113 4.113 26 C 0.055 3.945 27 F -0.127 7.127 28 C 0.125 3.875 29 F -0.089 7.089 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.354 0.646 34 H 0.252 0.748 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -2.501 -22.143 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.065 3.935 3 H 0.107 0.893 4 N -0.374 5.374 5 C -0.311 4.311 6 H 0.105 0.895 7 C -0.198 4.198 8 N -0.595 5.595 9 Si 0.702 3.298 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.211 1.211 13 C 0.042 3.958 14 H 0.088 0.912 15 C -0.174 4.174 16 C -0.155 4.155 17 C -0.176 4.176 18 C -0.026 4.026 19 N -0.345 5.345 20 C 0.311 3.689 21 O -0.286 6.286 22 C -0.136 4.136 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.132 4.132 26 C 0.034 3.966 27 F -0.105 7.105 28 C 0.103 3.897 29 F -0.067 7.067 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.188 0.812 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.680 -1.990 -21.320 22.749 hybrid contribution 0.603 -1.653 0.517 1.834 sum 8.283 -3.644 -20.804 22.687 Atomic orbital electron populations 1.22548 0.99545 1.00960 0.99876 1.20687 0.90504 0.98000 0.84338 0.89301 1.42799 1.79186 1.08311 1.07123 1.18901 1.32885 0.94822 0.84479 0.89496 1.24489 1.03102 0.96246 0.96002 1.69666 1.55116 1.34739 1.00013 0.86762 0.78207 0.88656 0.76197 1.21837 1.22261 1.21050 1.21669 0.78469 0.95758 0.99881 0.91200 1.22020 1.00961 0.95549 0.98869 1.21512 0.94973 1.00364 0.98634 1.21942 0.96855 0.96299 1.02476 1.22090 0.97764 0.91675 0.91069 1.47749 1.06942 1.47202 1.32577 1.17975 0.85502 0.82605 0.82780 1.91218 1.65777 1.44128 1.27475 1.20291 0.95595 1.05288 0.92409 1.21429 0.95302 0.97233 0.96059 1.20937 0.93068 1.00945 0.98569 1.21164 1.01531 1.00503 0.89974 1.17647 0.86902 1.07567 0.84450 1.91546 1.73047 1.93956 1.51951 1.17841 0.89479 1.00499 0.81887 1.91797 1.85239 1.92022 1.37647 0.92342 0.94595 0.93712 0.81214 0.93772 0.91105 0.90614 0.92070 0.91997 0.91544 0.91104 0.89150 0.91601 0.83626 0.84023 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.14 37.16 0.34 -2.66 16 2 C 0.17 3.44 1.88 -67.92 -0.13 3.31 16 3 H 0.09 1.97 5.88 -52.28 -0.31 1.66 16 4 N -0.73 -17.81 3.42 -53.42 -0.18 -17.99 16 5 C -0.18 -5.34 8.48 -15.06 -0.13 -5.47 16 6 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 7 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 8 N -0.94 -31.82 13.97 55.49 0.78 -31.05 16 9 Si 0.87 24.02 27.74 -169.99 -4.72 19.31 16 10 H -0.29 -8.16 7.11 56.52 0.40 -7.76 16 11 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 12 H -0.28 -7.32 6.51 56.52 0.37 -6.95 16 13 C 0.15 2.22 2.72 -67.60 -0.18 2.04 16 14 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.14 -1.93 4.87 -26.61 -0.13 -2.06 16 16 C -0.12 -1.26 5.88 -26.69 -0.16 -1.41 16 17 C -0.14 -1.43 6.08 -26.61 -0.16 -1.59 16 18 C 0.10 1.01 4.84 -3.69 -0.02 0.99 16 19 N -0.61 -9.06 2.98 -166.36 -0.50 -9.56 16 20 C 0.53 9.71 6.92 -12.40 -0.09 9.62 16 21 O -0.42 -9.80 8.94 5.30 0.05 -9.75 16 22 C -0.13 -2.06 5.25 -104.92 -0.55 -2.62 16 23 C -0.08 -0.85 7.34 -39.19 -0.29 -1.14 16 24 C -0.12 -0.98 10.03 -39.65 -0.40 -1.37 16 25 C -0.11 -1.14 10.01 -39.45 -0.40 -1.54 16 26 C 0.05 0.81 7.30 -39.42 -0.29 0.52 16 27 F -0.13 -2.05 17.18 2.25 0.04 -2.01 16 28 C 0.12 2.26 7.25 -38.89 -0.28 1.98 16 29 F -0.09 -2.14 16.09 2.25 0.04 -2.10 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.77 7.03 -51.93 -0.37 0.41 16 33 H 0.35 8.68 3.49 -40.82 -0.14 8.54 16 34 H 0.25 8.20 8.31 -40.82 -0.34 7.86 16 35 H 0.07 1.25 6.05 -51.93 -0.31 0.94 16 36 H 0.08 1.01 7.03 -51.93 -0.37 0.65 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.87 4.46 -51.93 -0.23 0.64 16 42 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.15 1.13 6.23 -52.48 -0.33 0.80 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -37.02 352.27 -8.00 -45.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.87 Total: 4.48 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.95 Total: -1.66 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.10 Total: -58.60 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.05 Total: -9.75 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.72 Total: 19.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.02 -8.00 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265089010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.830 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds