Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47121 * 2 1 4 4 N 1.46500 * 109.47162 * 119.99997 * 2 1 3 5 5 C 1.36936 * 120.00166 * 286.92958 * 4 2 1 6 6 H 1.07998 * 119.99700 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99601 * 179.72346 * 5 4 2 8 8 N 1.31613 * 120.00406 * 0.27883 * 7 5 4 9 9 Si 1.86804 * 119.99374 * 180.27506 * 7 5 4 10 10 H 1.48495 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46791 * 120.00320 * 9 7 5 12 12 H 1.48499 * 109.46938 * 240.00003 * 9 7 5 13 13 C 1.52998 * 109.46958 * 240.00034 * 2 1 3 14 14 H 1.08992 * 109.58743 * 286.72771 * 13 2 1 15 15 C 1.53195 * 109.58789 * 47.15573 * 13 2 1 16 16 C 1.53036 * 109.31419 * 174.42020 * 15 13 2 17 17 C 1.53043 * 109.53762 * 298.63506 * 16 15 13 18 18 C 1.53187 * 109.31261 * 61.36578 * 17 16 15 19 19 N 1.46927 * 108.77744 * 305.36394 * 18 17 16 20 20 C 1.34777 * 120.63073 * 233.59180 * 19 18 17 21 21 O 1.21590 * 119.99716 * 183.61433 * 20 19 18 22 22 C 1.47570 * 120.00164 * 3.60829 * 20 19 18 23 23 C 1.39728 * 120.14177 * 305.38911 * 22 20 19 24 24 C 1.37740 * 119.90438 * 179.76485 * 23 22 20 25 25 C 1.38761 * 120.18981 * 0.51018 * 24 23 22 26 26 F 1.35097 * 119.85650 * 179.71945 * 25 24 23 27 27 C 1.38497 * 120.28366 * 359.74163 * 25 24 23 28 28 C 1.38195 * 120.09683 * 0.02562 * 27 25 24 29 29 F 1.35092 * 120.09683 * 179.97438 * 28 27 25 30 30 H 1.08994 * 109.47336 * 59.99973 * 1 2 3 31 31 H 1.08998 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47167 * 299.99918 * 1 2 3 33 33 H 0.97002 * 119.99787 * 106.93063 * 4 2 1 34 34 H 0.97006 * 120.00225 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.49798 * 294.37286 * 15 13 2 36 36 H 1.09006 * 109.49422 * 54.46655 * 15 13 2 37 37 H 1.09000 * 109.45930 * 178.61540 * 16 15 13 38 38 H 1.08997 * 109.46379 * 58.65510 * 16 15 13 39 39 H 1.09002 * 109.49615 * 301.41000 * 17 16 15 40 40 H 1.09002 * 109.52458 * 181.33287 * 17 16 15 41 41 H 1.09001 * 109.58652 * 185.57497 * 18 17 16 42 42 H 1.09001 * 109.59063 * 65.15108 * 18 17 16 43 43 H 1.08002 * 120.05095 * 359.97438 * 23 22 20 44 44 H 1.08002 * 119.90279 * 180.24791 * 24 23 22 45 45 H 1.08004 * 119.94841 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9210 -0.0884 2.4222 6 1 1.4838 0.8954 2.5073 7 6 2.3785 -0.7453 3.5562 8 7 2.9108 -1.9445 3.4525 9 14 2.2387 0.0731 5.2297 10 1 1.6078 1.4086 5.0765 11 1 1.4038 -0.7687 6.1240 12 1 3.5928 0.2294 5.8189 13 6 2.0399 -0.7212 -1.2492 14 1 1.8831 -1.7944 -1.1412 15 6 1.2858 -0.2104 -2.4810 16 6 1.8940 -0.8316 -3.7405 17 6 3.3601 -0.4097 -3.8624 18 6 4.1377 -0.9228 -2.6464 19 7 3.4729 -0.4482 -1.4252 20 6 4.1643 0.2247 -0.4841 21 8 3.6189 0.5548 0.5513 22 6 5.5834 0.5606 -0.7101 23 6 6.4999 -0.4443 -1.0305 24 6 7.8223 -0.1246 -1.2453 25 6 8.2491 1.1910 -1.1340 26 9 9.5489 1.4962 -1.3405 27 6 7.3485 2.1925 -0.8117 28 6 6.0180 1.8857 -0.5984 29 9 5.1396 2.8625 -0.2835 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.4107 -1.5744 1.1197 34 1 3.2302 -2.4036 4.2451 35 1 0.2355 -0.4922 -2.4072 36 1 1.3689 0.8751 -2.5341 37 1 1.3435 -0.4889 -4.6166 38 1 1.8330 -1.9179 -3.6755 39 1 3.4236 0.6777 -3.9027 40 1 3.7865 -0.8329 -4.7720 41 1 5.1586 -0.5420 -2.6783 42 1 4.1517 -2.0127 -2.6548 43 1 6.1712 -1.4698 -1.1130 44 1 8.5299 -0.9008 -1.4969 45 1 7.6866 3.2147 -0.7260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265092128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = -42.331833 kcal Electronic energy + Delta-G solvation = -31226.149862 eV Core-core repulsion = 26881.742826 eV Total energy + Delta-G solvation = -4344.407036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.18261 -48.91257 -40.43491 -38.56746 -36.83090 -35.21479 -32.78461 -32.21342 -31.09058 -30.44993 -29.85828 -27.76721 -25.40960 -24.30352 -23.44188 -23.29063 -22.53788 -20.83758 -20.00133 -19.28644 -18.22324 -17.37985 -17.07377 -16.57490 -16.10091 -15.79638 -15.55266 -15.27627 -14.93463 -14.78346 -14.53755 -14.50954 -14.20087 -14.01671 -13.72735 -13.49718 -13.12979 -13.02597 -12.70524 -12.41214 -12.31191 -12.16028 -11.94065 -11.93195 -11.62586 -11.34428 -11.13701 -10.92633 -10.83971 -10.66154 -10.59306 -10.39532 -10.11074 -9.68876 -9.42114 -9.19983 -8.88235 -8.64482 -8.37258 -8.04082 -6.50552 -5.48820 -2.68884 0.65359 0.87878 2.98052 3.24528 3.52638 3.59054 3.64331 3.66089 3.72960 4.26499 4.46319 4.56187 4.69209 4.77585 4.81461 4.89918 4.98096 5.04198 5.18543 5.39009 5.43207 5.56681 5.61557 5.63166 5.75730 5.77076 5.79766 5.83472 5.87095 5.90438 5.96688 6.00054 6.08570 6.11041 6.14658 6.35589 6.46495 6.47044 6.57365 6.80933 6.90354 7.06000 7.37301 7.86006 7.97036 8.68433 8.85325 9.80809 10.37583 10.72957 11.75751 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.005415 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.505986 B = 5169.138758 C = 7267.485558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.693 5.693 5 C -0.183 4.183 6 H 0.064 0.936 7 C -0.027 4.027 8 N -0.944 5.944 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.068 0.932 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.103 3.897 19 N -0.607 5.607 20 C 0.516 3.484 21 O -0.412 6.412 22 C -0.150 4.150 23 C -0.036 4.036 24 C -0.169 4.169 25 C 0.136 3.864 26 F -0.132 7.132 27 C -0.198 4.198 28 C 0.171 3.829 29 F -0.116 7.116 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.377 0.623 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 2.849 -19.310 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.077 0.923 4 N -0.333 5.333 5 C -0.315 4.315 6 H 0.082 0.918 7 C -0.220 4.220 8 N -0.596 5.596 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.225 1.225 13 C 0.046 3.954 14 H 0.086 0.914 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.020 4.020 19 N -0.345 5.345 20 C 0.299 3.701 21 O -0.278 6.278 22 C -0.154 4.154 23 C -0.055 4.055 24 C -0.188 4.188 25 C 0.116 3.884 26 F -0.111 7.111 27 C -0.218 4.218 28 C 0.151 3.849 29 F -0.094 7.094 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.574 3.246 -18.520 19.919 hybrid contribution 0.417 0.286 0.978 1.101 sum 6.991 3.532 -17.542 19.211 Atomic orbital electron populations 1.22566 0.99570 1.00691 1.00029 1.20450 0.90633 0.96846 0.85174 0.92329 1.42259 1.71223 1.18296 1.01499 1.19074 1.29626 0.98686 0.84090 0.91833 1.24545 1.03115 0.97104 0.97230 1.69647 1.48786 1.13723 1.27446 0.86213 0.76880 0.78285 0.85584 1.20927 1.22509 1.22467 1.21521 0.78549 0.99667 0.95641 0.91367 1.22032 0.99803 1.00958 0.93934 1.21524 0.95433 1.00733 0.97948 1.21914 0.96191 1.01522 0.97600 1.21818 0.96824 0.99013 0.84379 1.47759 1.09565 1.57677 1.19465 1.17995 0.85066 0.82365 0.84686 1.91388 1.66490 1.47053 1.22899 1.20446 0.97237 0.92520 1.05226 1.21083 0.91306 0.99403 0.93677 1.21102 0.97148 0.94998 1.05536 1.17405 0.78181 0.93164 0.99606 1.91525 1.33500 1.93888 1.92165 1.20930 0.91746 1.01224 1.07874 1.17207 0.86392 0.84564 0.96784 1.91591 1.67842 1.60588 1.89391 0.94363 0.93634 0.92655 0.78948 0.94302 0.90412 0.91625 0.92069 0.91868 0.91702 0.91231 0.89906 0.91646 0.83410 0.83684 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 8.60 37.16 0.32 -2.79 16 2 C 0.18 3.67 1.84 -67.93 -0.13 3.54 16 3 H 0.06 1.35 6.28 -51.93 -0.33 1.03 16 4 N -0.69 -17.76 3.26 -53.43 -0.17 -17.93 16 5 C -0.18 -5.31 8.32 -15.06 -0.13 -5.44 16 6 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 8 N -0.94 -29.79 13.06 55.49 0.72 -29.07 16 9 Si 0.90 24.09 29.55 -169.99 -5.02 19.07 16 10 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 12 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 13 C 0.15 2.41 2.62 -67.60 -0.18 2.23 16 14 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 15 C -0.13 -1.61 4.38 -26.61 -0.12 -1.72 16 16 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 17 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 18 C 0.10 1.13 5.54 -3.71 -0.02 1.11 16 19 N -0.61 -9.35 2.97 -166.43 -0.49 -9.84 16 20 C 0.52 9.61 6.66 -12.45 -0.08 9.53 16 21 O -0.41 -9.88 9.93 5.29 0.05 -9.83 16 22 C -0.15 -2.31 4.86 -104.91 -0.51 -2.82 16 23 C -0.04 -0.44 7.44 -39.21 -0.29 -0.73 16 24 C -0.17 -1.75 10.01 -39.57 -0.40 -2.15 16 25 C 0.14 1.54 7.30 -39.29 -0.29 1.26 16 26 F -0.13 -1.48 17.26 2.25 0.04 -1.44 16 27 C -0.20 -2.43 9.99 -39.50 -0.39 -2.82 16 28 C 0.17 2.58 7.27 -38.97 -0.28 2.30 16 29 F -0.12 -2.00 16.66 2.25 0.04 -1.96 16 30 H 0.04 0.58 6.45 -51.93 -0.33 0.24 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.13 7.98 -51.93 -0.41 0.71 16 33 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 34 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.82 4.79 -51.93 -0.25 0.57 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.15 1.58 7.43 -52.49 -0.39 1.19 16 44 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -34.21 360.97 -8.45 -42.66 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.15 Total: 5.04 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.91 Total: -2.14 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.06 Total: -56.84 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.02 Total: 19.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.21 -8.45 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265092128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds