Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 N 1.46499 * 109.47054 * 120.00525 * 2 1 3 5 5 C 1.36935 * 119.99836 * 285.73861 * 4 2 1 6 6 H 1.07999 * 120.00260 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99871 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00177 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99930 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47167 * 60.00109 * 9 7 5 11 11 H 1.48495 * 109.47120 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47331 * 300.00389 * 9 7 5 13 13 C 1.53002 * 109.47140 * 240.00331 * 2 1 3 14 14 H 1.08993 * 109.58517 * 288.67234 * 13 2 1 15 15 C 1.53196 * 109.58387 * 48.95048 * 13 2 1 16 16 C 1.53047 * 109.30917 * 174.42313 * 15 13 2 17 17 C 1.53035 * 109.53551 * 298.63361 * 16 15 13 18 18 C 1.53186 * 109.31554 * 61.36778 * 17 16 15 19 19 N 1.46927 * 108.89420 * 305.29439 * 18 17 16 20 20 C 1.34774 * 120.62857 * 233.67613 * 19 18 17 21 21 O 1.21552 * 120.00094 * 180.77306 * 20 19 18 22 22 C 1.47863 * 120.00278 * 0.76881 * 20 19 18 23 23 C 1.39541 * 120.12202 * 326.54078 * 22 20 19 24 24 C 1.38204 * 119.88001 * 179.74118 * 23 22 20 25 25 F 1.35101 * 119.94321 * 180.27400 * 24 23 22 26 26 C 1.38530 * 120.11967 * 0.55652 * 24 23 22 27 27 C 1.38535 * 120.24050 * 359.69418 * 26 24 23 28 28 F 1.35098 * 119.93834 * 180.02562 * 27 26 24 29 29 C 1.38198 * 120.12171 * 0.02642 * 27 26 24 30 30 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47180 * 299.99101 * 1 2 3 32 32 H 1.08998 * 109.47078 * 59.99763 * 1 2 3 33 33 H 0.97001 * 119.99870 * 105.74690 * 4 2 1 34 34 H 0.97003 * 120.00030 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.49873 * 54.47484 * 15 13 2 36 36 H 1.09002 * 109.52484 * 294.38545 * 15 13 2 37 37 H 1.09004 * 109.45632 * 178.61608 * 16 15 13 38 38 H 1.08995 * 109.46377 * 58.65531 * 16 15 13 39 39 H 1.08998 * 109.49876 * 301.41189 * 17 16 15 40 40 H 1.09007 * 109.49826 * 181.32117 * 17 16 15 41 41 H 1.09003 * 109.58938 * 65.14839 * 18 17 16 42 42 H 1.08999 * 109.58989 * 185.43461 * 18 17 16 43 43 H 1.08009 * 120.05800 * 0.02562 * 23 22 20 44 44 H 1.07993 * 119.87974 * 179.72151 * 26 24 23 45 45 H 1.08007 * 120.05842 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.9433 -0.0787 2.4188 6 1 1.5237 0.9131 2.5014 7 6 2.4064 -0.7329 3.5520 8 7 2.9182 -1.9413 3.4514 9 14 2.3047 0.1023 5.2198 10 1 0.8857 0.4059 5.5356 11 1 2.8606 -0.8000 6.2600 12 1 3.0861 1.3647 5.1898 13 6 2.0400 -0.7212 -1.2493 14 1 1.8519 -1.7907 -1.1562 15 6 1.3176 -0.1785 -2.4864 16 6 1.9285 -0.8021 -3.7435 17 6 3.4064 -0.4168 -3.8394 18 6 4.1526 -0.9621 -2.6177 19 7 3.4849 -0.4833 -1.3996 20 6 4.1815 0.1621 -0.4432 21 8 3.6204 0.5410 0.5663 22 6 5.6283 0.4093 -0.6219 23 6 6.4171 -0.5149 -1.3082 24 6 7.7679 -0.2763 -1.4769 25 9 8.5316 -1.1675 -2.1460 26 6 8.3413 0.8722 -0.9562 27 6 7.5639 1.7906 -0.2695 28 9 8.1293 2.9088 0.2354 29 6 6.2111 1.5648 -0.0999 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.3949 -1.5816 1.1219 34 1 3.2416 -2.3986 4.2434 35 1 1.4291 0.9050 -2.5268 36 1 0.2592 -0.4336 -2.4313 37 1 1.4000 -0.4364 -4.6238 38 1 1.8388 -1.8871 -3.6910 39 1 3.4983 0.6690 -3.8670 40 1 3.8351 -0.8418 -4.7471 41 1 4.1388 -2.0519 -2.6375 42 1 5.1838 -0.6094 -2.6318 43 1 5.9718 -1.4128 -1.7108 44 1 9.3980 1.0526 -1.0864 45 1 5.6059 2.2816 0.4353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266010188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -27.462698 kcal Electronic energy + Delta-G solvation = -30998.378314 eV Core-core repulsion = 26654.616052 eV Total energy + Delta-G solvation = -4343.762262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.13117 -49.06495 -40.61315 -38.52782 -36.87626 -35.26531 -32.96424 -32.25477 -30.96300 -30.51569 -29.79641 -27.81258 -25.71942 -24.38139 -23.58590 -23.19506 -22.43539 -20.86845 -20.05361 -19.49501 -17.90734 -17.24312 -16.75937 -16.70403 -16.12539 -16.01977 -15.74025 -15.40182 -15.31390 -14.96738 -14.60024 -14.55642 -14.17302 -13.90026 -13.55186 -13.51344 -13.12326 -12.97508 -12.72512 -12.46525 -12.29501 -12.04214 -11.93335 -11.87959 -11.83751 -11.34493 -11.16215 -10.86293 -10.83933 -10.65869 -10.60371 -10.37212 -10.17142 -9.75183 -9.45884 -9.16129 -8.80526 -8.67926 -8.46102 -8.08139 -6.54347 -5.52845 -2.72217 0.62818 0.85503 2.91818 3.19942 3.56467 3.60897 3.62004 3.64414 3.79055 4.30360 4.42208 4.62192 4.74177 4.74994 4.81646 4.90004 4.95577 4.99495 5.16072 5.36050 5.39729 5.51048 5.58277 5.63553 5.73260 5.76313 5.79061 5.82394 5.87186 5.89462 5.97769 6.05051 6.08334 6.08708 6.12023 6.32703 6.43093 6.44116 6.60472 6.76047 6.86870 7.01595 7.32394 7.84307 7.91571 8.63960 8.81868 9.76067 10.32353 10.67569 11.71154 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008536 B = 0.005398 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.468260 B = 5185.384563 C = 7427.991433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.179 3.821 3 H 0.061 0.939 4 N -0.690 5.690 5 C -0.186 4.186 6 H 0.063 0.937 7 C -0.025 4.025 8 N -0.942 5.942 9 Si 0.899 3.101 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.290 1.290 13 C 0.149 3.851 14 H 0.068 0.932 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.080 3.920 19 N -0.606 5.606 20 C 0.512 3.488 21 O -0.415 6.415 22 C -0.048 4.048 23 C -0.153 4.153 24 C 0.121 3.879 25 F -0.132 7.132 26 C -0.184 4.184 27 C 0.126 3.874 28 F -0.130 7.130 29 C -0.113 4.113 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 3.474 -18.422 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.078 0.922 4 N -0.330 5.330 5 C -0.318 4.318 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.593 5.593 9 Si 0.732 3.268 10 H -0.218 1.218 11 H -0.221 1.221 12 H -0.217 1.217 13 C 0.046 3.954 14 H 0.086 0.914 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.043 4.043 19 N -0.343 5.343 20 C 0.296 3.704 21 O -0.282 6.282 22 C -0.051 4.051 23 C -0.172 4.172 24 C 0.102 3.898 25 F -0.110 7.110 26 C -0.204 4.204 27 C 0.106 3.894 28 F -0.109 7.109 29 C -0.133 4.133 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.177 0.823 44 H 0.166 0.834 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.697 3.827 -17.643 18.931 hybrid contribution 0.573 0.007 0.887 1.056 sum 6.270 3.833 -16.756 18.297 Atomic orbital electron populations 1.22570 0.99550 1.00734 1.00058 1.20463 0.90651 0.96866 0.85122 0.92176 1.42297 1.71637 1.17225 1.01823 1.18980 1.30409 0.98157 0.84257 0.91858 1.24568 1.02985 0.96967 0.97343 1.69628 1.48663 1.13119 1.27895 0.86364 0.77254 0.78301 0.84928 1.21800 1.22127 1.21744 1.21580 0.78317 0.99790 0.95727 0.91362 1.22027 0.99895 1.00863 0.93916 1.21531 0.95423 1.00807 0.97944 1.21922 0.96152 1.01535 0.97599 1.22473 0.98187 0.99046 0.84595 1.47734 1.08771 1.58840 1.18973 1.18060 0.85265 0.82790 0.84319 1.91345 1.67155 1.44736 1.24962 1.19934 0.95503 0.93697 0.96008 1.21790 0.91918 1.02213 1.01297 1.17107 0.88616 0.88124 0.95951 1.91532 1.75277 1.66429 1.77766 1.21065 1.01785 0.94701 1.02867 1.17104 0.91006 0.84149 0.97108 1.91538 1.85131 1.49127 1.85058 1.21264 0.93095 0.98807 1.00127 0.93648 0.92625 0.94331 0.78905 0.94095 0.91590 0.90438 0.92077 0.91903 0.91607 0.91214 0.91559 0.88029 0.82292 0.83447 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.68 37.16 0.32 -2.69 16 2 C 0.18 3.52 1.82 -67.93 -0.12 3.40 16 3 H 0.06 1.31 6.35 -51.93 -0.33 0.98 16 4 N -0.69 -17.20 3.23 -53.42 -0.17 -17.38 16 5 C -0.19 -5.26 8.25 -15.06 -0.12 -5.38 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 8 N -0.94 -29.31 13.06 55.49 0.72 -28.58 16 9 Si 0.90 23.61 29.55 -169.99 -5.02 18.58 16 10 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 11 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 13 C 0.15 2.33 2.60 -67.45 -0.18 2.16 16 14 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 15 C -0.13 -1.54 4.46 -26.61 -0.12 -1.66 16 16 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 17 C -0.13 -1.24 6.08 -26.62 -0.16 -1.40 16 18 C 0.08 0.88 4.87 -3.71 -0.02 0.86 16 19 N -0.61 -9.10 2.98 -166.11 -0.50 -9.59 16 20 C 0.51 9.19 7.20 -12.32 -0.09 9.10 16 21 O -0.42 -9.43 9.73 5.32 0.05 -9.38 16 22 C -0.05 -0.72 5.49 -104.98 -0.58 -1.30 16 23 C -0.15 -1.94 7.38 -39.11 -0.29 -2.23 16 24 C 0.12 1.44 7.29 -39.49 -0.29 1.15 16 25 F -0.13 -1.52 17.26 2.25 0.04 -1.48 16 26 C -0.18 -2.12 10.00 -39.36 -0.39 -2.51 16 27 C 0.13 1.65 7.29 -39.49 -0.29 1.36 16 28 F -0.13 -1.72 17.26 2.25 0.04 -1.69 16 29 C -0.11 -1.67 9.58 -39.11 -0.37 -2.04 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.10 8.01 -51.93 -0.42 0.68 16 32 H 0.04 0.56 6.44 -51.93 -0.33 0.22 16 33 H 0.38 10.22 7.70 -40.82 -0.31 9.90 16 34 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.88 6.70 -51.93 -0.35 0.54 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 42 H 0.10 1.03 3.69 -51.99 -0.19 0.84 16 43 H 0.16 1.79 5.46 -52.48 -0.29 1.50 16 44 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.15 2.32 7.97 -52.48 -0.42 1.90 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -32.29 358.40 -8.38 -40.67 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.99 Total: 6.77 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.95 Total: -3.33 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.06 Total: -55.55 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.05 Total: -9.38 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.29 -8.38 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266010188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.206 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds