Wall clock time and date at job start Tue Mar 31 2020 20:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 N 1.46499 * 109.47054 * 120.00525 * 2 1 3 5 5 C 1.36935 * 119.99836 * 285.73861 * 4 2 1 6 6 H 1.07999 * 120.00260 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99871 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00177 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99930 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47167 * 60.00109 * 9 7 5 11 11 H 1.48495 * 109.47120 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47331 * 300.00389 * 9 7 5 13 13 C 1.53002 * 109.47140 * 240.00331 * 2 1 3 14 14 H 1.08993 * 109.58517 * 288.67234 * 13 2 1 15 15 C 1.53196 * 109.58387 * 48.95048 * 13 2 1 16 16 C 1.53047 * 109.30917 * 174.42313 * 15 13 2 17 17 C 1.53035 * 109.53551 * 298.63361 * 16 15 13 18 18 C 1.53186 * 109.31554 * 61.36778 * 17 16 15 19 19 N 1.46927 * 108.89420 * 305.29439 * 18 17 16 20 20 C 1.34774 * 120.62857 * 233.67613 * 19 18 17 21 21 O 1.21552 * 120.00094 * 180.77306 * 20 19 18 22 22 C 1.47863 * 120.00278 * 0.76881 * 20 19 18 23 23 C 1.39541 * 120.12202 * 326.54078 * 22 20 19 24 24 C 1.38204 * 119.88001 * 179.74118 * 23 22 20 25 25 F 1.35101 * 119.94321 * 180.27400 * 24 23 22 26 26 C 1.38530 * 120.11967 * 0.55652 * 24 23 22 27 27 C 1.38535 * 120.24050 * 359.69418 * 26 24 23 28 28 F 1.35098 * 119.93834 * 180.02562 * 27 26 24 29 29 C 1.38198 * 120.12171 * 0.02642 * 27 26 24 30 30 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47180 * 299.99101 * 1 2 3 32 32 H 1.08998 * 109.47078 * 59.99763 * 1 2 3 33 33 H 0.97001 * 119.99870 * 105.74690 * 4 2 1 34 34 H 0.97003 * 120.00030 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.49873 * 54.47484 * 15 13 2 36 36 H 1.09002 * 109.52484 * 294.38545 * 15 13 2 37 37 H 1.09004 * 109.45632 * 178.61608 * 16 15 13 38 38 H 1.08995 * 109.46377 * 58.65531 * 16 15 13 39 39 H 1.08998 * 109.49876 * 301.41189 * 17 16 15 40 40 H 1.09007 * 109.49826 * 181.32117 * 17 16 15 41 41 H 1.09003 * 109.58938 * 65.14839 * 18 17 16 42 42 H 1.08999 * 109.58989 * 185.43461 * 18 17 16 43 43 H 1.08009 * 120.05800 * 0.02562 * 23 22 20 44 44 H 1.07993 * 119.87974 * 179.72151 * 26 24 23 45 45 H 1.08007 * 120.05842 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.9433 -0.0787 2.4188 6 1 1.5237 0.9131 2.5014 7 6 2.4064 -0.7329 3.5520 8 7 2.9182 -1.9413 3.4514 9 14 2.3047 0.1023 5.2198 10 1 0.8857 0.4059 5.5356 11 1 2.8606 -0.8000 6.2600 12 1 3.0861 1.3647 5.1898 13 6 2.0400 -0.7212 -1.2493 14 1 1.8519 -1.7907 -1.1562 15 6 1.3176 -0.1785 -2.4864 16 6 1.9285 -0.8021 -3.7435 17 6 3.4064 -0.4168 -3.8394 18 6 4.1526 -0.9621 -2.6177 19 7 3.4849 -0.4833 -1.3996 20 6 4.1815 0.1621 -0.4432 21 8 3.6204 0.5410 0.5663 22 6 5.6283 0.4093 -0.6219 23 6 6.4171 -0.5149 -1.3082 24 6 7.7679 -0.2763 -1.4769 25 9 8.5316 -1.1675 -2.1460 26 6 8.3413 0.8722 -0.9562 27 6 7.5639 1.7906 -0.2695 28 9 8.1293 2.9088 0.2354 29 6 6.2111 1.5648 -0.0999 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.3949 -1.5816 1.1219 34 1 3.2416 -2.3986 4.2434 35 1 1.4291 0.9050 -2.5268 36 1 0.2592 -0.4336 -2.4313 37 1 1.4000 -0.4364 -4.6238 38 1 1.8388 -1.8871 -3.6910 39 1 3.4983 0.6690 -3.8670 40 1 3.8351 -0.8418 -4.7471 41 1 4.1388 -2.0519 -2.6375 42 1 5.1838 -0.6094 -2.6318 43 1 5.9718 -1.4128 -1.7108 44 1 9.3980 1.0526 -1.0864 45 1 5.6059 2.2816 0.4353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266010188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:38 Heat of formation + Delta-G solvation = -46.410138 kcal Electronic energy + Delta-G solvation = -30999.199937 eV Core-core repulsion = 26654.616052 eV Total energy + Delta-G solvation = -4344.583885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.12985 -50.08499 -41.85961 -39.65911 -38.12350 -36.86309 -34.39628 -33.75960 -32.10934 -31.74284 -31.21970 -29.34803 -26.96346 -26.01335 -24.73306 -24.41732 -23.71283 -21.98955 -21.39433 -20.70449 -19.28037 -18.54949 -18.30929 -17.74601 -17.19754 -17.09247 -16.92471 -16.71442 -16.46110 -16.40676 -15.92024 -15.57212 -15.50803 -15.30834 -14.95106 -14.77639 -14.53769 -14.19857 -13.94228 -13.75262 -13.58123 -13.50286 -13.07050 -13.00293 -12.96913 -12.93876 -12.76264 -12.51712 -12.33233 -12.12248 -11.85476 -11.67070 -11.57391 -11.33933 -11.16526 -10.78156 -10.28448 -9.91928 -9.79514 -9.42061 -8.56557 -7.76493 -4.93511 -0.44771 -0.20790 1.43222 1.46632 1.51453 1.75650 2.00352 2.42600 2.65951 2.72666 3.22872 3.34611 3.57155 3.60818 3.76906 3.82050 3.87189 3.94233 4.01527 4.14991 4.33362 4.35019 4.38067 4.44560 4.59316 4.63020 4.73211 4.74741 4.78378 4.82952 4.89422 4.94538 4.97101 5.07631 5.11268 5.16297 5.21665 5.29827 5.44482 5.49384 5.55807 5.57713 5.63849 5.90200 6.45050 6.58647 7.45692 7.53439 8.30205 8.52747 9.48475 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008536 B = 0.005398 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.468260 B = 5185.384563 C = 7427.991433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.038 0.962 4 N -0.696 5.696 5 C -0.167 4.167 6 H 0.055 0.945 7 C -0.091 4.091 8 N -0.978 5.978 9 Si 0.953 3.047 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.293 1.293 13 C 0.151 3.849 14 H 0.062 0.938 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.071 3.929 19 N -0.602 5.602 20 C 0.511 3.489 21 O -0.481 6.481 22 C -0.067 4.067 23 C -0.142 4.142 24 C 0.129 3.871 25 F -0.123 7.123 26 C -0.163 4.163 27 C 0.123 3.877 28 F -0.131 7.131 29 C -0.126 4.126 30 H 0.045 0.955 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.363 0.637 34 H 0.240 0.760 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.176 0.824 44 H 0.179 0.821 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 3.271 -21.721 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.055 0.945 4 N -0.334 5.334 5 C -0.300 4.300 6 H 0.073 0.927 7 C -0.280 4.280 8 N -0.633 5.633 9 Si 0.785 3.215 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.220 1.220 13 C 0.048 3.952 14 H 0.080 0.920 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.050 4.050 19 N -0.337 5.337 20 C 0.297 3.703 21 O -0.353 6.353 22 C -0.070 4.070 23 C -0.161 4.161 24 C 0.110 3.890 25 F -0.101 7.101 26 C -0.183 4.183 27 C 0.103 3.897 28 F -0.110 7.110 29 C -0.146 4.146 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.195 0.805 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.193 0.807 44 H 0.196 0.804 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.657 3.649 -21.038 22.366 hybrid contribution 0.371 0.145 1.704 1.750 sum 7.028 3.794 -19.334 20.919 Atomic orbital electron populations 1.22426 0.97925 1.00886 1.00634 1.20558 0.91547 0.95756 0.85289 0.94470 1.42329 1.72006 1.16631 1.02464 1.19152 1.27788 0.97298 0.85743 0.92735 1.25164 1.04688 0.97934 1.00263 1.69773 1.51252 1.14464 1.27789 0.85472 0.77392 0.77028 0.81605 1.20881 1.22591 1.22023 1.21495 0.79222 0.98923 0.95541 0.91981 1.21978 1.00160 1.00591 0.93212 1.21530 0.95621 1.01046 0.97082 1.21913 0.95797 1.01358 0.97566 1.22800 0.98722 0.99942 0.83503 1.47888 1.08652 1.57541 1.19627 1.18568 0.86446 0.81467 0.83848 1.91307 1.68578 1.48071 1.27374 1.19694 0.94329 0.94900 0.98119 1.21861 0.92246 1.01878 1.00122 1.17001 0.88186 0.88207 0.95630 1.91565 1.74927 1.66145 1.77498 1.21330 1.03007 0.93409 1.00540 1.17063 0.90388 0.84600 0.97606 1.91536 1.84964 1.49304 1.85185 1.21211 0.94034 0.98807 1.00507 0.93614 0.95218 0.90521 0.80521 0.95114 0.92017 0.89404 0.89825 0.91264 0.92075 0.88163 0.90134 0.87106 0.80712 0.80384 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 8.68 71.98 0.62 -5.05 16 2 C 0.18 7.17 1.82 44.99 0.08 7.25 16 3 H 0.04 1.71 6.35 -2.39 -0.02 1.69 16 4 N -0.70 -36.28 3.23 -322.94 -1.04 -37.33 16 5 C -0.17 -9.84 8.25 84.03 0.69 -9.15 16 6 H 0.05 3.24 7.83 -2.91 -0.02 3.22 16 7 C -0.09 -5.59 5.50 84.86 0.47 -5.12 16 8 N -0.98 -63.38 13.06 21.65 0.28 -63.10 16 9 Si 0.95 50.49 29.55 68.60 2.03 52.52 16 10 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 12 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 13 C 0.15 4.67 2.60 44.92 0.12 4.79 16 14 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 15 C -0.12 -2.63 4.46 30.68 0.14 -2.49 16 16 C -0.12 -1.78 5.88 30.62 0.18 -1.60 16 17 C -0.13 -1.88 6.08 30.67 0.19 -1.70 16 18 C 0.07 1.38 4.87 86.36 0.42 1.80 16 19 N -0.60 -17.77 2.98 -797.74 -2.38 -20.15 16 20 C 0.51 18.90 7.20 86.79 0.62 19.53 16 21 O -0.48 -23.18 9.73 -3.88 -0.04 -23.22 16 22 C -0.07 -2.03 5.49 -20.10 -0.11 -2.14 16 23 C -0.14 -3.34 7.38 22.58 0.17 -3.18 16 24 C 0.13 2.69 7.29 22.33 0.16 2.85 16 25 F -0.12 -2.38 17.26 44.97 0.78 -1.61 16 26 C -0.16 -3.29 10.00 22.41 0.22 -3.06 16 27 C 0.12 3.09 7.29 22.33 0.16 3.25 16 28 F -0.13 -3.37 17.26 44.97 0.78 -2.59 16 29 C -0.13 -3.79 9.58 22.58 0.22 -3.57 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.18 8.01 -2.39 -0.02 1.16 16 32 H 0.08 2.12 6.44 -2.39 -0.02 2.11 16 33 H 0.36 20.60 7.70 -92.71 -0.71 19.88 16 34 H 0.24 15.34 8.31 -92.71 -0.77 14.56 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.74 6.70 -2.39 -0.02 1.73 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 42 H 0.11 1.94 3.69 -2.45 -0.01 1.93 16 43 H 0.18 3.49 5.46 -2.91 -0.02 3.48 16 44 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 45 H 0.13 4.44 7.97 -2.91 -0.02 4.42 16 Total: -1.00 -74.74 358.40 5.08 -69.67 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.32 Total: 23.41 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.35 Total: 2.40 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -3.14 Total: -120.58 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.04 Total: -23.22 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 1.55 Total: -4.20 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Total: -74.74 5.08 -69.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266010188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.256 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds