Wall clock time and date at job start Tue Mar 31 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47418 * 239.99897 * 2 1 3 5 5 C 1.52992 * 109.47502 * 174.99875 * 4 2 1 6 6 N 1.46509 * 109.47038 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99565 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00604 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99586 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47290 * 179.97438 * 9 7 6 11 11 C 1.76197 * 99.99993 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00421 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00242 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47299 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47275 * 120.00271 * 15 13 11 18 18 H 1.48504 * 109.47309 * 240.00184 * 15 13 11 19 19 N 1.46903 * 109.47230 * 120.00138 * 2 1 3 20 20 C 1.46903 * 110.99820 * 264.80349 * 19 2 1 21 21 H 1.08997 * 109.47290 * 336.98122 * 20 19 2 22 22 C 1.52990 * 109.47182 * 96.98386 * 20 19 2 23 23 C 1.50701 * 109.46962 * 216.98338 * 20 19 2 24 24 N 1.31793 * 119.12497 * 314.73015 * 23 20 19 25 25 C 1.32329 * 120.82108 * 179.76030 * 24 23 20 26 26 C 1.38603 * 119.10584 * 0.50666 * 25 24 23 27 27 C 1.38595 * 118.39473 * 359.74496 * 26 25 24 28 28 N 1.31796 * 119.12374 * 135.00214 * 23 20 19 29 29 H 1.09004 * 109.46791 * 305.35671 * 1 2 3 30 30 H 1.08995 * 109.46826 * 65.35861 * 1 2 3 31 31 H 1.09000 * 109.46770 * 185.35537 * 1 2 3 32 32 H 1.09004 * 109.46979 * 295.00384 * 4 2 1 33 33 H 1.09007 * 109.46691 * 55.00029 * 4 2 1 34 34 H 1.08998 * 109.47501 * 299.99789 * 5 4 2 35 35 H 1.08998 * 109.47166 * 60.00131 * 5 4 2 36 36 H 0.96993 * 120.00020 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.47304 * 299.99390 * 9 7 6 38 38 H 1.09007 * 109.47081 * 59.99745 * 9 7 6 39 39 H 0.96993 * 120.00523 * 179.97438 * 14 13 11 40 40 H 1.00896 * 110.99731 * 28.75610 * 19 2 1 41 41 H 1.09001 * 109.47270 * 54.07811 * 22 20 19 42 42 H 1.08998 * 109.47616 * 174.08378 * 22 20 19 43 43 H 1.08997 * 109.47358 * 294.08068 * 22 20 19 44 44 H 1.08004 * 120.45172 * 180.27389 * 25 24 23 45 45 H 1.07995 * 120.80445 * 179.77270 * 26 25 24 46 46 H 1.08001 * 120.44734 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3035 -2.5102 7 6 5.3740 -1.3395 -2.7754 8 8 6.1585 -0.8004 -2.0239 9 6 5.8763 -2.0499 -4.0059 10 16 7.6802 -1.9221 -4.0823 11 6 7.9872 -2.8121 -5.5717 12 1 7.1635 -3.2349 -6.1277 13 6 9.2876 -2.9689 -6.0309 14 7 10.2916 -2.4532 -5.3535 15 14 9.6131 -3.9118 -7.6103 16 1 8.3256 -4.3876 -8.1770 17 1 10.2862 -3.0206 -8.5891 18 1 10.4863 -5.0773 -7.3200 19 7 2.0197 -0.6925 1.1994 20 6 2.3123 0.2629 2.2763 21 1 2.4965 1.2480 1.8479 22 6 1.1188 0.3368 3.2307 23 6 3.5334 -0.1921 3.0333 24 7 3.6387 -1.4596 3.3788 25 6 4.6985 -1.8963 4.0399 26 6 5.6996 -0.9990 4.3774 27 6 5.5507 0.3266 4.0012 28 7 4.4651 0.6893 3.3371 29 1 -0.3633 0.5947 0.8382 30 1 -0.3633 0.4285 -0.9341 31 1 -0.3633 -1.0232 0.0959 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9995 -1.0728 -0.4260 36 1 3.4258 -1.7350 -3.1111 37 1 5.5878 -3.1001 -3.9624 38 1 5.4419 -1.5902 -4.8936 39 1 11.2003 -2.5630 -5.6742 40 1 1.3616 -1.3931 1.5064 41 1 0.8685 -0.6657 3.5778 42 1 1.3748 0.9638 4.0847 43 1 0.2627 0.7650 2.7094 44 1 4.7807 -2.9372 4.3161 45 1 6.5746 -1.3250 4.9199 46 1 6.3106 1.0537 4.2466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266127256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:40 Heat of formation + Delta-G solvation = 4.383099 kcal Electronic energy + Delta-G solvation = -26056.418134 eV Core-core repulsion = 22300.169947 eV Total energy + Delta-G solvation = -3756.248187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19351 -39.12680 -38.19936 -35.16475 -33.81858 -33.55852 -32.39096 -31.34868 -30.02578 -28.57593 -27.99429 -25.45133 -25.08970 -24.63867 -23.18219 -21.70481 -21.14168 -20.06917 -17.81008 -17.64123 -17.36206 -16.19435 -16.00972 -15.85687 -15.69077 -15.29223 -14.96901 -14.77318 -14.63919 -14.34769 -13.93157 -13.83948 -13.62386 -13.45517 -13.34770 -13.07422 -12.73759 -12.62556 -12.40176 -12.16158 -11.87975 -11.76207 -11.44108 -11.22652 -11.06229 -11.02555 -10.97757 -10.93455 -10.82832 -10.71625 -9.76162 -9.70758 -9.36178 -9.27981 -9.04074 -8.78720 -8.63450 -8.17282 -6.44953 -6.18066 -3.87852 0.74236 0.95948 3.12886 3.23220 3.24776 3.31167 3.37217 3.39035 3.65515 3.82501 3.86390 4.23524 4.24139 4.44598 4.51747 4.68721 4.74998 4.78177 4.88246 4.93577 4.96066 5.03862 5.15151 5.16886 5.19030 5.34602 5.37067 5.40238 5.45014 5.50637 5.61256 5.67649 5.71232 5.74847 5.82205 5.95421 6.08929 6.20977 6.21240 6.27507 6.69843 6.80560 6.87401 7.12653 7.63520 7.87119 7.97491 8.39265 8.76437 9.27222 10.89482 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.002253 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.674180 B =12422.366217 C =13990.339740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.080 0.920 4 C -0.117 4.117 5 C 0.129 3.871 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.519 6.519 9 C -0.152 4.152 10 S -0.062 6.062 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.668 5.668 20 C 0.154 3.846 21 H 0.101 0.899 22 C -0.171 4.171 23 C 0.333 3.667 24 N -0.498 5.498 25 C 0.147 3.853 26 C -0.233 4.233 27 C 0.150 3.850 28 N -0.519 5.519 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.267 0.733 40 H 0.352 0.648 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.166 0.834 45 H 0.146 0.854 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 4.359 18.941 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.023 4.023 3 H 0.098 0.902 4 C -0.155 4.155 5 C 0.005 3.995 6 N -0.394 5.394 7 C 0.315 3.685 8 O -0.394 6.394 9 C -0.303 4.303 10 S 0.164 5.836 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.504 5.504 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.301 5.301 20 C 0.042 3.958 21 H 0.119 0.881 22 C -0.231 4.231 23 C 0.064 3.936 24 N -0.212 5.212 25 C -0.019 4.019 26 C -0.255 4.255 27 C -0.016 4.016 28 N -0.232 5.232 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.229 0.771 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.183 0.817 45 H 0.164 0.836 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.279 5.563 19.500 28.678 hybrid contribution -0.867 -1.582 -1.364 2.261 sum -21.146 3.980 18.136 28.141 Atomic orbital electron populations 1.22532 0.96395 1.02358 1.02540 1.21638 0.92850 0.97781 0.90040 0.90158 1.21784 0.95215 1.01627 0.96895 1.21172 0.93024 0.97053 0.88218 1.46031 1.07630 1.58491 1.27237 1.20268 0.81652 0.79798 0.86743 1.90696 1.54992 1.44567 1.49136 1.23528 1.06648 1.02533 0.97615 1.85400 0.92456 1.72592 1.33108 1.22916 0.95461 1.39926 1.09858 0.90913 1.25000 0.95069 0.95706 0.97912 1.70033 0.99313 1.42737 1.38274 0.86114 0.78378 0.79257 0.81725 1.19631 1.20586 1.20592 1.60225 1.51002 1.14457 1.04370 1.20204 0.89136 0.95858 0.90591 0.88060 1.22454 0.97497 1.03060 1.00055 1.23031 0.93916 0.85139 0.91505 1.68165 1.24813 1.16937 1.11261 1.23255 0.88245 1.00459 0.89932 1.22920 1.02227 0.96131 1.04254 1.23199 0.93783 0.94926 0.89696 1.68168 1.02622 1.39226 1.13229 0.92450 0.91712 0.92066 0.91046 0.91223 0.92577 0.90735 0.77140 0.89345 0.89346 0.92286 0.82705 0.91400 0.91954 0.91390 0.81661 0.83595 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 9.22 37.16 0.34 -0.62 16 2 C 0.09 0.65 2.67 -67.71 -0.18 0.47 16 3 H 0.08 0.64 7.13 -51.93 -0.37 0.26 16 4 C -0.12 -1.02 5.00 -26.73 -0.13 -1.15 16 5 C 0.13 1.72 5.56 -4.04 -0.02 1.70 16 6 N -0.74 -10.88 5.56 -60.29 -0.34 -11.21 16 7 C 0.53 10.67 7.85 -10.99 -0.09 10.58 16 8 O -0.52 -12.74 15.86 5.56 0.09 -12.65 16 9 C -0.15 -3.24 6.16 36.00 0.22 -3.02 16 10 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 11 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 12 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 15 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 N -0.67 -5.75 5.38 -100.96 -0.54 -6.30 16 20 C 0.15 1.38 3.09 -68.87 -0.21 1.17 16 21 H 0.10 0.94 7.09 -51.93 -0.37 0.57 16 22 C -0.17 -1.14 9.19 37.15 0.34 -0.80 16 23 C 0.33 3.84 6.59 -157.19 -1.04 2.80 16 24 N -0.50 -5.69 10.11 -10.72 -0.11 -5.80 16 25 C 0.15 1.41 11.30 -17.20 -0.19 1.21 16 26 C -0.23 -2.00 10.17 -39.32 -0.40 -2.40 16 27 C 0.15 1.48 11.30 -17.20 -0.19 1.28 16 28 N -0.52 -6.25 10.32 -10.72 -0.11 -6.36 16 29 H 0.06 0.28 6.56 -51.93 -0.34 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.02 -51.93 -0.42 -0.10 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.20 7.75 -51.93 -0.40 0.79 16 36 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 38 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.35 2.72 7.72 -39.29 -0.30 2.41 16 41 H 0.07 0.46 8.00 -51.93 -0.42 0.05 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 44 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -37.62 399.58 -9.92 -47.54 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.08 Total: 3.91 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.36 Total: -2.01 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.36 Total: -55.58 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.62 -9.92 -47.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.921 kcal (2) G-P(sol) polarization free energy of solvation -37.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds