Wall clock time and date at job start Tue Mar 31 2020 20:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47418 * 239.99897 * 2 1 3 5 5 C 1.52992 * 109.47502 * 174.99875 * 4 2 1 6 6 N 1.46509 * 109.47038 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99565 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00604 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99586 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47290 * 179.97438 * 9 7 6 11 11 C 1.76197 * 99.99993 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00421 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00242 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47299 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47275 * 120.00271 * 15 13 11 18 18 H 1.48504 * 109.47309 * 240.00184 * 15 13 11 19 19 N 1.46903 * 109.47230 * 120.00138 * 2 1 3 20 20 C 1.46903 * 110.99820 * 264.80349 * 19 2 1 21 21 H 1.08997 * 109.47290 * 336.98122 * 20 19 2 22 22 C 1.52990 * 109.47182 * 96.98386 * 20 19 2 23 23 C 1.50701 * 109.46962 * 216.98338 * 20 19 2 24 24 N 1.31793 * 119.12497 * 314.73015 * 23 20 19 25 25 C 1.32329 * 120.82108 * 179.76030 * 24 23 20 26 26 C 1.38603 * 119.10584 * 0.50666 * 25 24 23 27 27 C 1.38595 * 118.39473 * 359.74496 * 26 25 24 28 28 N 1.31796 * 119.12374 * 135.00214 * 23 20 19 29 29 H 1.09004 * 109.46791 * 305.35671 * 1 2 3 30 30 H 1.08995 * 109.46826 * 65.35861 * 1 2 3 31 31 H 1.09000 * 109.46770 * 185.35537 * 1 2 3 32 32 H 1.09004 * 109.46979 * 295.00384 * 4 2 1 33 33 H 1.09007 * 109.46691 * 55.00029 * 4 2 1 34 34 H 1.08998 * 109.47501 * 299.99789 * 5 4 2 35 35 H 1.08998 * 109.47166 * 60.00131 * 5 4 2 36 36 H 0.96993 * 120.00020 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.47304 * 299.99390 * 9 7 6 38 38 H 1.09007 * 109.47081 * 59.99745 * 9 7 6 39 39 H 0.96993 * 120.00523 * 179.97438 * 14 13 11 40 40 H 1.00896 * 110.99731 * 28.75610 * 19 2 1 41 41 H 1.09001 * 109.47270 * 54.07811 * 22 20 19 42 42 H 1.08998 * 109.47616 * 174.08378 * 22 20 19 43 43 H 1.08997 * 109.47358 * 294.08068 * 22 20 19 44 44 H 1.08004 * 120.45172 * 180.27389 * 25 24 23 45 45 H 1.07995 * 120.80445 * 179.77270 * 26 25 24 46 46 H 1.08001 * 120.44734 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3035 -2.5102 7 6 5.3740 -1.3395 -2.7754 8 8 6.1585 -0.8004 -2.0239 9 6 5.8763 -2.0499 -4.0059 10 16 7.6802 -1.9221 -4.0823 11 6 7.9872 -2.8121 -5.5717 12 1 7.1635 -3.2349 -6.1277 13 6 9.2876 -2.9689 -6.0309 14 7 10.2916 -2.4532 -5.3535 15 14 9.6131 -3.9118 -7.6103 16 1 8.3256 -4.3876 -8.1770 17 1 10.2862 -3.0206 -8.5891 18 1 10.4863 -5.0773 -7.3200 19 7 2.0197 -0.6925 1.1994 20 6 2.3123 0.2629 2.2763 21 1 2.4965 1.2480 1.8479 22 6 1.1188 0.3368 3.2307 23 6 3.5334 -0.1921 3.0333 24 7 3.6387 -1.4596 3.3788 25 6 4.6985 -1.8963 4.0399 26 6 5.6996 -0.9990 4.3774 27 6 5.5507 0.3266 4.0012 28 7 4.4651 0.6893 3.3371 29 1 -0.3633 0.5947 0.8382 30 1 -0.3633 0.4285 -0.9341 31 1 -0.3633 -1.0232 0.0959 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9995 -1.0728 -0.4260 36 1 3.4258 -1.7350 -3.1111 37 1 5.5878 -3.1001 -3.9624 38 1 5.4419 -1.5902 -4.8936 39 1 11.2003 -2.5630 -5.6742 40 1 1.3616 -1.3931 1.5064 41 1 0.8685 -0.6657 3.5778 42 1 1.3748 0.9638 4.0847 43 1 0.2627 0.7650 2.7094 44 1 4.7807 -2.9372 4.3161 45 1 6.5746 -1.3250 4.9199 46 1 6.3106 1.0537 4.2466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266127256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:39 Heat of formation + Delta-G solvation = -23.901580 kcal Electronic energy + Delta-G solvation = -26057.644649 eV Core-core repulsion = 22300.169947 eV Total energy + Delta-G solvation = -3757.474703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93413 -40.61696 -38.97396 -36.28904 -34.60291 -34.59186 -34.50260 -32.22681 -31.29571 -29.31326 -28.98479 -27.65881 -25.78530 -25.37361 -24.16564 -22.39337 -22.08410 -21.37642 -19.83234 -18.41688 -18.12524 -17.71770 -17.19849 -16.92450 -16.88657 -16.50177 -16.22226 -16.02700 -15.79575 -15.40015 -15.02088 -14.84856 -14.70288 -14.43629 -14.36382 -14.04022 -14.00025 -13.51252 -13.31382 -13.23267 -13.16740 -12.91596 -12.64711 -12.60605 -12.45039 -12.16750 -12.10290 -11.80653 -11.74790 -11.70385 -11.49361 -11.16317 -10.94780 -10.42224 -10.28128 -10.15227 -10.09635 -9.34489 -8.68222 -8.35190 -6.13806 0.00666 0.20389 1.26810 1.41439 1.47034 1.58580 1.61751 2.26283 2.32917 2.70196 2.93970 2.98828 3.17782 3.32116 3.56911 3.79612 3.84389 3.95436 4.05716 4.10412 4.21567 4.23143 4.24591 4.28338 4.31358 4.45079 4.49016 4.52253 4.54884 4.71744 4.75508 4.84772 4.91578 4.95692 5.07301 5.13189 5.20192 5.23103 5.39478 5.41508 5.49729 5.51350 6.04885 6.15696 6.19733 6.53530 6.56034 7.05823 7.20398 7.27156 8.74541 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.002253 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.674180 B =12422.366217 C =13990.339740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.073 0.927 4 C -0.105 4.105 5 C 0.134 3.866 6 N -0.712 5.712 7 C 0.529 3.471 8 O -0.572 6.572 9 C -0.127 4.127 10 S -0.156 6.156 11 C -0.544 4.544 12 H 0.083 0.917 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.002 2.998 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.273 1.273 19 N -0.680 5.680 20 C 0.156 3.844 21 H 0.092 0.908 22 C -0.159 4.159 23 C 0.312 3.688 24 N -0.516 5.516 25 C 0.131 3.869 26 C -0.229 4.229 27 C 0.130 3.870 28 N -0.548 5.548 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.416 0.584 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.357 0.643 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.192 0.808 45 H 0.177 0.823 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.993 3.151 17.870 30.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.091 0.909 4 C -0.143 4.143 5 C 0.011 3.989 6 N -0.366 5.366 7 C 0.314 3.686 8 O -0.451 6.451 9 C -0.278 4.278 10 S 0.071 5.929 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.823 3.177 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.313 5.313 20 C 0.044 3.956 21 H 0.110 0.890 22 C -0.218 4.218 23 C 0.044 3.956 24 N -0.229 5.229 25 C -0.035 4.035 26 C -0.251 4.251 27 C -0.035 4.035 28 N -0.263 5.263 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.178 0.822 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.209 0.791 45 H 0.194 0.806 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -22.711 4.344 18.427 29.567 hybrid contribution -0.168 -1.190 -0.938 1.525 sum -22.879 3.154 17.489 28.970 Atomic orbital electron populations 1.22430 0.94086 1.03039 1.03315 1.21615 0.94517 0.96993 0.88957 0.90892 1.21762 0.91262 1.02741 0.98540 1.21208 0.96154 0.95412 0.86164 1.45804 1.05990 1.57153 1.27615 1.20160 0.83046 0.79370 0.85982 1.90684 1.56739 1.46978 1.50655 1.23363 1.00982 1.04276 0.99212 1.85621 0.99743 1.73335 1.34193 1.23231 0.96245 1.39976 1.09734 0.89851 1.26175 0.94645 0.96568 1.01952 1.70198 0.99944 1.44261 1.40499 0.84867 0.78807 0.77572 0.76447 1.17957 1.19867 1.19886 1.60154 1.51606 1.14861 1.04680 1.20201 0.89201 0.95244 0.90941 0.88982 1.22346 0.97055 1.02976 0.99427 1.23528 0.94689 0.85394 0.92013 1.68191 1.25798 1.16919 1.12032 1.23840 0.88111 1.01958 0.89577 1.23257 1.02854 0.95402 1.03567 1.23737 0.93865 0.96339 0.89554 1.68191 1.03636 1.40054 1.14388 0.91713 0.90914 0.91398 0.90087 0.89079 0.94141 0.93612 0.74672 0.87248 0.87063 0.91983 0.82170 0.91486 0.92647 0.89492 0.79100 0.80566 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.22 71.98 0.66 -0.69 16 2 C 0.09 1.20 2.67 44.91 0.12 1.32 16 3 H 0.07 1.10 7.13 -2.39 -0.02 1.09 16 4 C -0.10 -1.59 5.00 30.59 0.15 -1.44 16 5 C 0.13 3.51 5.56 86.37 0.48 3.99 16 6 N -0.71 -19.91 5.56 -463.06 -2.57 -22.48 16 7 C 0.53 21.21 7.85 87.66 0.69 21.89 16 8 O -0.57 -28.96 15.86 -3.02 -0.05 -29.01 16 9 C -0.13 -5.29 6.16 71.23 0.44 -4.85 16 10 S -0.16 -8.98 20.57 -56.49 -1.16 -10.14 16 11 C -0.54 -31.70 9.50 67.96 0.65 -31.05 16 12 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 13 C 0.01 0.64 5.49 84.86 0.47 1.11 16 14 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16 15 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 N -0.68 -11.34 5.38 -473.32 -2.55 -13.89 16 20 C 0.16 2.83 3.09 44.17 0.14 2.97 16 21 H 0.09 1.78 7.09 -2.39 -0.02 1.76 16 22 C -0.16 -2.02 9.19 71.98 0.66 -1.36 16 23 C 0.31 7.46 6.59 138.75 0.91 8.37 16 24 N -0.52 -11.94 10.11 -187.84 -1.90 -13.84 16 25 C 0.13 2.47 11.30 84.71 0.96 3.42 16 26 C -0.23 -3.84 10.17 22.44 0.23 -3.62 16 27 C 0.13 2.62 11.30 84.70 0.96 3.58 16 28 N -0.55 -13.82 10.32 -187.84 -1.94 -15.76 16 29 H 0.06 0.44 6.56 -2.38 -0.02 0.43 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.48 8.02 -2.39 -0.02 0.46 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.50 7.75 -2.39 -0.02 1.48 16 36 H 0.42 8.26 8.47 -92.71 -0.79 7.48 16 37 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 38 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 39 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.36 5.12 7.72 -89.70 -0.69 4.43 16 41 H 0.07 0.87 8.00 -2.39 -0.02 0.85 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 0.75 6.56 -2.39 -0.02 0.73 16 44 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -85.52 399.58 -0.82 -86.35 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.48 Total: 25.64 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.51 Total: 3.65 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -8.67 Total: -122.70 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -85.52 -0.82 -86.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.444 kcal (2) G-P(sol) polarization free energy of solvation -85.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds