Wall clock time and date at job start Tue Mar 31 2020 20:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46966 * 2 1 4 4 N 1.46898 * 109.47502 * 120.00897 * 2 1 3 5 5 C 1.46900 * 110.99780 * 276.14406 * 4 2 1 6 6 H 1.08997 * 109.46995 * 349.39033 * 5 4 2 7 7 C 1.52997 * 109.47181 * 109.39536 * 5 4 2 8 8 C 1.53006 * 109.46753 * 229.39534 * 5 4 2 9 9 C 1.53000 * 109.47275 * 65.00405 * 8 5 4 10 10 N 1.46501 * 109.47086 * 180.02562 * 9 8 5 11 11 C 1.34768 * 119.99695 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00445 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99967 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47576 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00302 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99560 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99836 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99706 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47064 * 120.00299 * 19 17 15 22 22 H 1.48501 * 109.46937 * 240.00602 * 19 17 15 23 23 C 1.50705 * 109.46862 * 240.00963 * 2 1 3 24 24 N 1.31791 * 119.12120 * 284.72844 * 23 2 1 25 25 C 1.32337 * 120.82043 * 179.75914 * 24 23 2 26 26 C 1.38601 * 119.10283 * 0.50423 * 25 24 23 27 27 C 1.38599 * 118.39694 * 359.74914 * 26 25 24 28 28 N 1.31793 * 119.12406 * 104.99730 * 23 2 1 29 29 H 1.09005 * 109.46856 * 302.79904 * 1 2 3 30 30 H 1.09001 * 109.47798 * 62.79655 * 1 2 3 31 31 H 1.08997 * 109.47338 * 182.80192 * 1 2 3 32 32 H 1.00898 * 110.99793 * 152.18820 * 4 2 1 33 33 H 1.09000 * 109.46770 * 305.31258 * 7 5 4 34 34 H 1.08995 * 109.47142 * 185.30985 * 7 5 4 35 35 H 1.09007 * 109.47006 * 65.31043 * 7 5 4 36 36 H 1.08999 * 109.46602 * 184.99854 * 8 5 4 37 37 H 1.08997 * 109.46846 * 305.00107 * 8 5 4 38 38 H 1.09004 * 109.46768 * 299.99792 * 9 8 5 39 39 H 1.08996 * 109.47599 * 59.99295 * 9 8 5 40 40 H 0.97000 * 119.99390 * 359.97438 * 10 9 8 41 41 H 1.09004 * 109.47013 * 300.00643 * 13 11 10 42 42 H 1.09008 * 109.46759 * 59.99666 * 13 11 10 43 43 H 0.97003 * 119.99557 * 179.97438 * 18 17 15 44 44 H 1.08004 * 120.44984 * 180.27387 * 25 24 23 45 45 H 1.07992 * 120.79993 * 179.77340 * 26 25 24 46 46 H 1.07997 * 120.44735 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6927 1.1993 5 6 2.0568 0.2154 2.3534 6 1 1.8924 1.2387 2.0159 7 6 0.9607 -0.1765 3.3462 8 6 3.4225 0.1168 3.0362 9 6 4.5065 0.6271 2.0846 10 7 5.8142 0.5321 2.7382 11 6 6.9245 0.9276 2.0846 12 8 6.8411 1.3617 0.9553 13 6 8.2697 0.8303 2.7571 14 16 9.5522 1.4325 1.6309 15 6 10.9770 1.2122 2.6438 16 1 10.8740 0.8076 3.6399 17 6 12.2317 1.5575 2.1612 18 7 12.3572 2.0500 0.9470 19 14 13.7424 1.3232 3.2349 20 1 13.3349 0.7569 4.5459 21 1 14.6857 0.3919 2.5656 22 1 14.4073 2.6340 3.4465 23 6 2.0322 -0.7102 -1.2306 24 7 1.9700 -2.0257 -1.2823 25 6 2.3971 -2.6833 -2.3483 26 6 2.9242 -1.9705 -3.4138 27 6 2.9777 -0.5887 -3.3203 28 7 2.5269 0.0003 -2.2243 29 1 -0.3633 0.5567 0.8639 30 1 -0.3635 0.4698 -0.9140 31 1 -0.3634 -1.0264 0.0502 32 1 2.9257 -1.1048 1.0341 33 1 -0.0018 -0.1977 2.8351 34 1 0.9263 0.5524 4.1558 35 1 1.1769 -1.1637 3.7550 36 1 3.4202 0.7224 3.9424 37 1 3.6254 -0.9226 3.2942 38 1 4.5088 0.0215 1.1783 39 1 4.3036 1.6664 1.8265 40 1 5.8808 0.1845 3.6413 41 1 8.2675 1.4362 3.6632 42 1 8.4723 -0.2091 3.0156 43 1 13.2341 2.2917 0.6099 44 1 2.3393 -3.7611 -2.3860 45 1 3.2841 -2.4795 -4.2956 46 1 3.3815 -0.0006 -4.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266127257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:44 Heat of formation + Delta-G solvation = 5.901886 kcal Electronic energy + Delta-G solvation = -26098.868892 eV Core-core repulsion = 22342.686565 eV Total energy + Delta-G solvation = -3756.182328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34953 -39.33305 -38.16871 -35.18522 -33.95002 -33.60753 -32.43617 -31.30087 -30.09145 -28.96100 -28.02715 -25.49688 -25.05730 -24.75795 -23.28182 -21.54533 -20.98267 -20.21922 -17.88455 -17.78365 -17.50395 -16.36097 -16.12811 -16.05921 -15.74116 -15.37433 -15.08060 -14.94710 -14.81192 -14.38837 -13.96528 -13.85775 -13.72835 -13.45865 -13.17085 -12.86792 -12.70166 -12.59934 -12.43479 -12.13475 -11.80332 -11.80043 -11.42059 -11.34084 -11.11805 -11.07550 -11.04933 -11.02671 -10.87387 -10.75584 -9.84451 -9.81392 -9.46732 -9.41810 -9.08739 -8.94644 -8.70012 -8.23895 -6.50867 -6.22550 -3.93076 0.58520 0.83721 3.02097 3.08976 3.20927 3.27496 3.32230 3.38205 3.50620 3.68150 3.70539 4.14339 4.19575 4.33447 4.53568 4.59614 4.70071 4.81471 4.82826 4.88240 5.00602 5.12612 5.12874 5.15934 5.18455 5.33167 5.38631 5.41806 5.49355 5.51985 5.62079 5.63623 5.71993 5.79341 5.89159 5.91226 5.98256 6.07104 6.11378 6.12966 6.58896 6.69711 6.77100 7.06570 7.59131 7.69469 7.84661 8.34739 8.60375 9.22889 10.84957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002265 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.337614 B =12361.604283 C =13903.103277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.155 3.845 3 H 0.073 0.927 4 N -0.666 5.666 5 C 0.086 3.914 6 H 0.063 0.937 7 C -0.136 4.136 8 C -0.146 4.146 9 C 0.120 3.880 10 N -0.738 5.738 11 C 0.530 3.470 12 O -0.517 6.517 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.310 3.690 24 N -0.494 5.494 25 C 0.145 3.855 26 C -0.229 4.229 27 C 0.150 3.850 28 N -0.512 5.512 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.347 0.653 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.169 0.831 45 H 0.148 0.852 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.920 -8.163 -1.219 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.091 0.909 4 N -0.301 5.301 5 C -0.024 4.024 6 H 0.081 0.919 7 C -0.194 4.194 8 C -0.185 4.185 9 C -0.005 4.005 10 N -0.393 5.393 11 C 0.316 3.684 12 O -0.391 6.391 13 C -0.304 4.304 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.205 1.205 23 C 0.042 3.958 24 N -0.208 5.208 25 C -0.021 4.021 26 C -0.251 4.251 27 C -0.016 4.016 28 N -0.226 5.226 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.168 0.832 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.186 0.814 45 H 0.166 0.834 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.872 -7.153 -2.287 27.902 hybrid contribution 2.364 -0.817 1.193 2.772 sum -24.508 -7.970 -1.094 25.795 Atomic orbital electron populations 1.21791 0.92550 1.03200 1.01619 1.20331 0.96517 0.94854 0.83902 0.90938 1.60627 1.33545 1.33144 1.02737 1.21630 0.94166 0.95287 0.91363 0.91869 1.21809 0.98253 1.01517 0.97795 1.22249 0.93876 1.02899 0.99427 1.21273 0.82232 1.01332 0.95640 1.45971 1.06234 1.68015 1.19072 1.20343 0.85260 0.76546 0.86251 1.90707 1.86492 1.43681 1.18261 1.23531 0.96525 1.05364 1.04941 1.85407 0.95874 1.82819 1.19374 1.22906 0.92818 1.49596 1.02941 0.90873 1.25002 0.98647 0.94554 0.95446 1.70032 1.24383 1.40272 1.15617 0.86109 0.81370 0.78049 0.79918 1.19610 1.20563 1.20543 1.23182 0.91248 0.87022 0.94365 1.68264 1.16611 1.09784 1.26122 1.23321 0.89855 1.01146 0.87812 1.22976 1.03213 0.96841 1.02113 1.23284 0.91033 0.92610 0.94641 1.68243 1.10837 1.41933 1.01555 0.91501 0.92676 0.91123 0.83223 0.92090 0.92733 0.92203 0.90091 0.90311 0.92524 0.91698 0.76748 0.89188 0.89243 0.92239 0.81419 0.83394 0.81293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.30 37.16 0.35 -0.77 16 2 C 0.16 1.55 2.92 -68.87 -0.20 1.35 16 3 H 0.07 0.77 7.40 -51.93 -0.38 0.38 16 4 N -0.67 -6.28 5.94 -100.95 -0.60 -6.88 16 5 C 0.09 0.68 2.59 -67.71 -0.18 0.51 16 6 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 7 C -0.14 -0.93 9.52 37.16 0.35 -0.58 16 8 C -0.15 -1.20 4.71 -26.73 -0.13 -1.32 16 9 C 0.12 1.44 5.53 -4.04 -0.02 1.42 16 10 N -0.74 -10.08 5.56 -60.29 -0.33 -10.41 16 11 C 0.53 10.18 7.85 -10.99 -0.09 10.09 16 12 O -0.52 -12.16 15.86 5.56 0.09 -12.07 16 13 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 15 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 19 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.31 3.57 6.27 -157.20 -0.99 2.59 16 24 N -0.49 -5.42 10.06 -10.72 -0.11 -5.53 16 25 C 0.14 1.23 11.31 -17.20 -0.19 1.04 16 26 C -0.23 -1.75 10.17 -39.31 -0.40 -2.15 16 27 C 0.15 1.42 11.31 -17.20 -0.19 1.23 16 28 N -0.51 -6.18 10.32 -10.72 -0.11 -6.29 16 29 H 0.07 0.48 7.12 -51.93 -0.37 0.11 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.35 3.76 6.33 -39.29 -0.25 3.51 16 33 H 0.06 0.42 7.11 -51.93 -0.37 0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.78 6.82 -51.93 -0.35 0.42 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -36.53 399.03 -9.88 -46.41 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.06 Total: 4.34 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.27 Total: -2.57 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.42 Total: -54.70 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.53 -9.88 -46.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.311 kcal (2) G-P(sol) polarization free energy of solvation -36.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds