Wall clock time and date at job start Tue Mar 31 2020 20:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46966 * 2 1 4 4 N 1.46898 * 109.47502 * 120.00897 * 2 1 3 5 5 C 1.46900 * 110.99780 * 276.14406 * 4 2 1 6 6 H 1.08997 * 109.46995 * 349.39033 * 5 4 2 7 7 C 1.52997 * 109.47181 * 109.39536 * 5 4 2 8 8 C 1.53006 * 109.46753 * 229.39534 * 5 4 2 9 9 C 1.53000 * 109.47275 * 65.00405 * 8 5 4 10 10 N 1.46501 * 109.47086 * 180.02562 * 9 8 5 11 11 C 1.34768 * 119.99695 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00445 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99967 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47576 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00302 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99560 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99836 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99706 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47064 * 120.00299 * 19 17 15 22 22 H 1.48501 * 109.46937 * 240.00602 * 19 17 15 23 23 C 1.50705 * 109.46862 * 240.00963 * 2 1 3 24 24 N 1.31791 * 119.12120 * 284.72844 * 23 2 1 25 25 C 1.32337 * 120.82043 * 179.75914 * 24 23 2 26 26 C 1.38601 * 119.10283 * 0.50423 * 25 24 23 27 27 C 1.38599 * 118.39694 * 359.74914 * 26 25 24 28 28 N 1.31793 * 119.12406 * 104.99730 * 23 2 1 29 29 H 1.09005 * 109.46856 * 302.79904 * 1 2 3 30 30 H 1.09001 * 109.47798 * 62.79655 * 1 2 3 31 31 H 1.08997 * 109.47338 * 182.80192 * 1 2 3 32 32 H 1.00898 * 110.99793 * 152.18820 * 4 2 1 33 33 H 1.09000 * 109.46770 * 305.31258 * 7 5 4 34 34 H 1.08995 * 109.47142 * 185.30985 * 7 5 4 35 35 H 1.09007 * 109.47006 * 65.31043 * 7 5 4 36 36 H 1.08999 * 109.46602 * 184.99854 * 8 5 4 37 37 H 1.08997 * 109.46846 * 305.00107 * 8 5 4 38 38 H 1.09004 * 109.46768 * 299.99792 * 9 8 5 39 39 H 1.08996 * 109.47599 * 59.99295 * 9 8 5 40 40 H 0.97000 * 119.99390 * 359.97438 * 10 9 8 41 41 H 1.09004 * 109.47013 * 300.00643 * 13 11 10 42 42 H 1.09008 * 109.46759 * 59.99666 * 13 11 10 43 43 H 0.97003 * 119.99557 * 179.97438 * 18 17 15 44 44 H 1.08004 * 120.44984 * 180.27387 * 25 24 23 45 45 H 1.07992 * 120.79993 * 179.77340 * 26 25 24 46 46 H 1.07997 * 120.44735 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6927 1.1993 5 6 2.0568 0.2154 2.3534 6 1 1.8924 1.2387 2.0159 7 6 0.9607 -0.1765 3.3462 8 6 3.4225 0.1168 3.0362 9 6 4.5065 0.6271 2.0846 10 7 5.8142 0.5321 2.7382 11 6 6.9245 0.9276 2.0846 12 8 6.8411 1.3617 0.9553 13 6 8.2697 0.8303 2.7571 14 16 9.5522 1.4325 1.6309 15 6 10.9770 1.2122 2.6438 16 1 10.8740 0.8076 3.6399 17 6 12.2317 1.5575 2.1612 18 7 12.3572 2.0500 0.9470 19 14 13.7424 1.3232 3.2349 20 1 13.3349 0.7569 4.5459 21 1 14.6857 0.3919 2.5656 22 1 14.4073 2.6340 3.4465 23 6 2.0322 -0.7102 -1.2306 24 7 1.9700 -2.0257 -1.2823 25 6 2.3971 -2.6833 -2.3483 26 6 2.9242 -1.9705 -3.4138 27 6 2.9777 -0.5887 -3.3203 28 7 2.5269 0.0003 -2.2243 29 1 -0.3633 0.5567 0.8639 30 1 -0.3635 0.4698 -0.9140 31 1 -0.3634 -1.0264 0.0502 32 1 2.9257 -1.1048 1.0341 33 1 -0.0018 -0.1977 2.8351 34 1 0.9263 0.5524 4.1558 35 1 1.1769 -1.1637 3.7550 36 1 3.4202 0.7224 3.9424 37 1 3.6254 -0.9226 3.2942 38 1 4.5088 0.0215 1.1783 39 1 4.3036 1.6664 1.8265 40 1 5.8808 0.1845 3.6413 41 1 8.2675 1.4362 3.6632 42 1 8.4723 -0.2091 3.0156 43 1 13.2341 2.2917 0.6099 44 1 2.3393 -3.7611 -2.3860 45 1 3.2841 -2.4795 -4.2956 46 1 3.3815 -0.0006 -4.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266127257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:43 Heat of formation + Delta-G solvation = -21.491020 kcal Electronic energy + Delta-G solvation = -26100.056738 eV Core-core repulsion = 22342.686565 eV Total energy + Delta-G solvation = -3757.370173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06841 -40.73225 -39.02461 -36.27217 -34.69435 -34.61347 -34.54260 -32.15026 -31.33922 -29.62753 -29.17768 -27.67051 -25.76659 -25.45810 -24.22586 -22.29527 -22.01722 -21.33572 -19.85893 -18.52722 -18.29275 -17.76989 -17.36453 -16.99896 -16.89799 -16.56693 -16.38409 -16.05334 -15.83273 -15.63791 -15.16153 -14.96328 -14.75001 -14.47575 -14.37597 -14.09580 -13.63061 -13.54847 -13.35529 -13.18983 -13.18216 -12.92757 -12.63881 -12.57087 -12.46533 -12.27516 -12.11269 -11.85508 -11.79077 -11.71797 -11.55924 -11.17595 -11.01053 -10.51752 -10.30150 -10.22897 -10.21755 -9.45641 -8.69816 -8.36606 -6.15275 -0.11389 0.13375 1.24677 1.40587 1.45381 1.54717 1.57000 2.21706 2.26004 2.67531 2.79820 2.97690 2.98439 3.29283 3.45444 3.73975 3.74192 3.82018 3.94548 4.02277 4.07371 4.17978 4.25451 4.26591 4.29610 4.46069 4.47048 4.48462 4.50328 4.69222 4.72874 4.84870 4.87378 4.93185 5.05025 5.11520 5.14038 5.30142 5.35922 5.40397 5.43195 5.54139 6.00549 6.06039 6.18368 6.27459 6.45097 7.04708 7.10844 7.18659 8.72994 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002265 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.337614 B =12361.604283 C =13903.103277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.155 3.845 3 H 0.059 0.941 4 N -0.664 5.664 5 C 0.085 3.915 6 H 0.061 0.939 7 C -0.129 4.129 8 C -0.131 4.131 9 C 0.123 3.877 10 N -0.710 5.710 11 C 0.530 3.470 12 O -0.569 6.569 13 C -0.128 4.128 14 S -0.155 6.155 15 C -0.544 4.544 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.292 3.708 24 N -0.512 5.512 25 C 0.134 3.866 26 C -0.218 4.218 27 C 0.128 3.872 28 N -0.546 5.546 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.419 0.581 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.200 0.800 45 H 0.183 0.817 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.414 -9.674 0.963 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.044 3.956 3 H 0.076 0.924 4 N -0.297 5.297 5 C -0.025 4.025 6 H 0.079 0.921 7 C -0.187 4.187 8 C -0.169 4.169 9 C -0.001 4.001 10 N -0.365 5.365 11 C 0.316 3.684 12 O -0.447 6.447 13 C -0.280 4.280 14 S 0.072 5.928 15 C -0.692 4.692 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 C 0.023 3.977 24 N -0.226 5.226 25 C -0.032 4.032 26 C -0.239 4.239 27 C -0.036 4.036 28 N -0.261 5.261 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.217 0.783 45 H 0.200 0.800 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -27.416 -8.688 -0.058 28.760 hybrid contribution 2.407 -0.396 0.471 2.484 sum -25.010 -9.083 0.413 26.611 Atomic orbital electron populations 1.21701 0.91439 1.02877 1.02091 1.20344 0.97298 0.93998 0.83969 0.92352 1.60717 1.32769 1.33360 1.02881 1.21715 0.94553 0.95032 0.91193 0.92098 1.21753 0.97436 1.01863 0.97648 1.22181 0.92209 1.03597 0.98944 1.21352 0.82214 1.00483 0.96097 1.45706 1.05396 1.65816 1.19540 1.20171 0.86063 0.76503 0.85650 1.90697 1.87138 1.46394 1.20474 1.23367 0.94625 1.06434 1.03525 1.85615 0.99450 1.84084 1.23609 1.23228 0.93128 1.49676 1.03193 0.89832 1.26161 1.02373 0.93849 0.96898 1.70196 1.25412 1.41435 1.17807 0.84879 0.76467 0.78227 0.78200 1.17957 1.19906 1.19892 1.23381 0.91944 0.87543 0.94792 1.68276 1.17401 1.09564 1.27351 1.23958 0.89156 1.02660 0.87398 1.23331 1.01663 0.96059 1.02891 1.23790 0.91170 0.94067 0.94619 1.68227 1.12075 1.43089 1.02687 0.90158 0.92933 0.91788 0.84338 0.92197 0.91257 0.92261 0.87980 0.89315 0.94379 0.93002 0.74359 0.86971 0.87130 0.91977 0.78344 0.79957 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 9.30 71.98 0.67 -1.40 16 2 C 0.16 3.20 2.92 44.17 0.13 3.33 16 3 H 0.06 1.33 7.40 -2.38 -0.02 1.31 16 4 N -0.66 -12.35 5.94 -473.31 -2.81 -15.16 16 5 C 0.08 1.25 2.59 44.92 0.12 1.36 16 6 H 0.06 0.94 7.18 -2.39 -0.02 0.93 16 7 C -0.13 -1.48 9.52 71.98 0.69 -0.79 16 8 C -0.13 -1.87 4.71 30.60 0.14 -1.72 16 9 C 0.12 2.87 5.53 86.38 0.48 3.35 16 10 N -0.71 -18.26 5.56 -463.07 -2.57 -20.83 16 11 C 0.53 20.19 7.85 87.66 0.69 20.88 16 12 O -0.57 -27.54 15.86 -3.02 -0.05 -27.59 16 13 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 14 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 15 C -0.54 -31.26 9.50 67.95 0.65 -30.62 16 16 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.29 6.97 6.27 138.75 0.87 7.84 16 24 N -0.51 -11.25 10.06 -187.84 -1.89 -13.14 16 25 C 0.13 2.15 11.31 84.70 0.96 3.11 16 26 C -0.22 -3.09 10.17 22.44 0.23 -2.86 16 27 C 0.13 2.45 11.31 84.70 0.96 3.41 16 28 N -0.55 -13.82 10.32 -187.84 -1.94 -15.76 16 29 H 0.08 1.09 7.12 -2.38 -0.02 1.07 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.34 7.36 6.33 -89.70 -0.57 6.79 16 33 H 0.06 0.72 7.11 -2.39 -0.02 0.70 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 1.07 6.82 -2.39 -0.02 1.05 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.42 7.49 8.47 -92.71 -0.79 6.70 16 41 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 46 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -83.00 399.03 -0.99 -83.99 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.36 Total: 26.42 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 7.47 Total: 2.32 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -8.93 Total: -120.99 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -83.00 -0.99 -83.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.500 kcal (2) G-P(sol) polarization free energy of solvation -82.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds