Wall clock time and date at job start Tue Mar 31 2020 21:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47246 * 119.99969 * 2 1 3 5 5 N 1.46503 * 109.47252 * 175.00366 * 4 2 1 6 6 C 1.34779 * 119.99979 * 179.97438 * 5 4 2 7 7 O 1.21274 * 119.99744 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99793 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47148 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00184 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00101 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00101 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99866 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46905 * 90.00063 * 14 12 10 16 16 H 1.48496 * 109.46956 * 209.99652 * 14 12 10 17 17 H 1.48498 * 109.47274 * 330.00499 * 14 12 10 18 18 N 1.46899 * 109.47398 * 240.00352 * 2 1 3 19 19 C 1.46900 * 111.00496 * 84.99944 * 18 2 1 20 20 C 1.50698 * 109.47214 * 180.02562 * 19 18 2 21 21 C 1.39780 * 125.89247 * 95.02152 * 20 19 18 22 22 C 1.35538 * 107.89186 * 180.02562 * 21 20 19 23 23 N 1.34708 * 107.88612 * 359.80889 * 22 21 20 24 24 N 1.30704 * 125.89402 * 275.01848 * 20 19 18 25 25 C 1.47143 * 111.01564 * 180.28687 * 23 22 21 26 26 C 1.54372 * 105.57074 * 342.88554 * 25 23 22 27 27 C 1.51430 * 141.97526 * 179.81602 * 22 21 20 28 28 H 1.08996 * 109.47317 * 60.00390 * 1 2 3 29 29 H 1.09007 * 109.46662 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47097 * 299.99838 * 1 2 3 31 31 H 1.09004 * 109.47120 * 295.00214 * 4 2 1 32 32 H 1.08995 * 109.47335 * 55.00144 * 4 2 1 33 33 H 0.97001 * 119.99764 * 0.02562 * 5 4 2 34 34 H 1.09004 * 109.47192 * 300.00334 * 8 6 5 35 35 H 1.08995 * 109.47058 * 60.00139 * 8 6 5 36 36 H 0.96996 * 120.00162 * 180.02562 * 13 12 10 37 37 H 1.00903 * 110.99570 * 321.04020 * 18 2 1 38 38 H 1.09001 * 109.47094 * 59.99916 * 19 18 2 39 39 H 1.09001 * 109.46587 * 300.00407 * 19 18 2 40 40 H 1.07997 * 126.05686 * 0.03801 * 21 20 19 41 41 H 1.09003 * 110.22984 * 223.86725 * 25 23 22 42 42 H 1.08998 * 110.23083 * 101.91142 * 25 23 22 43 43 H 1.08997 * 110.97688 * 267.60315 * 26 25 23 44 44 H 1.09002 * 110.97682 * 143.83325 * 26 25 23 45 45 H 1.09001 * 110.48851 * 77.84534 * 27 22 21 46 46 H 1.09000 * 110.48580 * 315.20359 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8832 3.1399 8 6 5.6750 -1.5367 2.1306 9 16 6.2784 -2.3898 3.6085 10 6 8.0101 -2.3768 3.2838 11 1 8.3864 -1.9236 2.3786 12 6 8.8908 -2.9490 4.1914 13 7 8.4321 -3.5018 5.2944 14 14 10.7266 -2.9358 3.8467 15 1 11.3286 -1.7041 4.4177 16 1 11.3556 -4.1284 4.4689 17 1 10.9551 -2.9641 2.3797 18 7 2.0197 -0.6924 -1.1994 19 6 2.0825 0.2227 -2.3469 20 6 2.5875 -0.5217 -3.5560 21 6 1.7952 -1.1158 -4.5425 22 6 2.6217 -1.6830 -5.4547 23 7 3.8900 -1.4532 -5.0632 24 7 3.8418 -0.7232 -3.8632 25 6 4.8496 -2.0370 -6.0137 26 6 4.0402 -3.0517 -6.8493 27 6 2.6098 -2.4754 -6.7451 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9824 -0.4620 0.4319 34 1 5.9630 -2.1003 1.2431 35 1 6.1098 -0.5383 2.0840 36 1 9.0475 -3.9014 5.9288 37 1 1.4496 -1.4979 -1.4100 38 1 2.7589 1.0463 -2.1182 39 1 1.0871 0.6164 -2.5525 40 1 0.7156 -1.1217 -4.5727 41 1 5.6505 -2.5450 -5.4765 42 1 5.2609 -1.2606 -6.6588 43 1 4.0921 -4.0481 -6.4105 44 1 4.3810 -3.0648 -7.8845 45 1 2.3991 -1.8223 -7.5920 46 1 1.8771 -3.2806 -6.6917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266924303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:21 Heat of formation + Delta-G solvation = 48.287090 kcal Electronic energy + Delta-G solvation = -25784.606538 eV Core-core repulsion = 22030.262171 eV Total energy + Delta-G solvation = -3754.344367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97460 -39.12781 -37.75881 -36.55349 -33.83085 -32.34852 -31.86044 -30.98334 -29.48575 -29.02128 -27.38371 -25.97233 -25.39284 -24.96029 -22.11208 -21.22332 -20.53752 -20.01753 -19.75151 -17.71373 -17.05167 -16.30587 -16.18859 -16.04391 -15.95400 -15.19212 -14.73470 -14.73195 -14.61734 -14.16890 -13.95412 -13.82877 -13.66125 -13.37788 -13.11374 -13.00654 -12.80626 -12.73908 -12.60544 -12.45350 -12.10580 -12.07917 -11.83801 -11.65900 -11.44708 -11.11944 -10.99899 -10.93856 -10.70741 -10.68878 -9.72521 -9.38771 -9.21354 -8.99056 -8.81149 -8.67128 -8.58573 -8.12312 -6.39526 -6.13696 -3.82783 1.59676 2.01508 2.42454 3.18599 3.27527 3.31912 3.33702 3.41686 3.61160 3.86618 4.00604 4.04982 4.21147 4.28721 4.32110 4.55027 4.64782 4.78642 4.87977 4.92903 4.95070 5.02987 5.08707 5.18707 5.21128 5.25000 5.32022 5.34057 5.38356 5.41724 5.48631 5.54892 5.73237 5.76686 5.83557 5.86372 6.01525 6.07113 6.31410 6.39241 6.55947 6.68281 6.88215 7.11367 7.59038 7.67897 8.02391 8.43794 8.85421 9.31569 10.93815 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.002438 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.411705 B =11483.651200 C =14042.899445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.087 0.913 4 C 0.135 3.865 5 N -0.724 5.724 6 C 0.530 3.470 7 O -0.527 6.527 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.533 4.533 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.272 1.272 18 N -0.676 5.676 19 C 0.144 3.856 20 C 0.077 3.923 21 C -0.255 4.255 22 C 0.057 3.943 23 N -0.391 5.391 24 N -0.247 5.247 25 C 0.128 3.872 26 C -0.132 4.132 27 C -0.066 4.066 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.267 0.733 37 H 0.348 0.652 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 6.373 -28.014 33.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.038 4.038 3 H 0.105 0.895 4 C 0.009 3.991 5 N -0.378 5.378 6 C 0.316 3.684 7 O -0.402 6.402 8 C -0.302 4.302 9 S 0.164 5.836 10 C -0.681 4.681 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.308 5.308 19 C 0.013 3.987 20 C -0.090 4.090 21 C -0.285 4.285 22 C -0.071 4.071 23 N -0.173 5.173 24 N -0.068 5.068 25 C 0.007 3.993 26 C -0.171 4.171 27 C -0.105 4.105 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.497 5.814 -25.740 30.602 hybrid contribution 0.354 0.618 -2.189 2.302 sum -15.143 6.431 -27.929 32.415 Atomic orbital electron populations 1.22423 0.96053 1.02784 1.02686 1.21850 0.93348 0.98448 0.90108 0.89524 1.21221 0.81447 1.00510 0.95878 1.45790 1.06709 1.61264 1.24055 1.20251 0.89407 0.76922 0.81797 1.90678 1.69931 1.46602 1.33026 1.23505 0.93951 1.05428 1.07273 1.85335 1.04390 1.73310 1.20556 1.22888 0.91683 1.43951 1.09576 0.90993 1.24987 0.99502 0.94645 0.94525 1.70024 1.35268 1.35678 1.09452 0.86179 0.83085 0.77768 0.78532 1.20313 1.20809 1.19724 1.60443 1.58138 1.09451 1.02782 1.20206 0.99288 0.93792 0.85390 1.22086 0.90378 0.99644 0.96883 1.20509 0.99870 1.10629 0.97501 1.22208 0.87673 1.00073 0.97184 1.50151 1.06830 1.42373 1.17977 1.77471 1.19850 1.13907 0.95613 1.22341 0.91790 0.96207 0.88969 1.22808 0.94015 0.99023 1.01259 1.20881 0.97986 0.98857 0.92779 0.92267 0.91898 0.91372 0.91414 0.91884 0.76110 0.89340 0.89438 0.92288 0.83339 0.89367 0.92898 0.84001 0.88790 0.89397 0.89300 0.88034 0.88845 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.16 37.16 0.34 -0.85 16 2 C 0.07 0.62 2.75 -67.72 -0.19 0.43 16 3 H 0.09 0.70 7.80 -51.93 -0.40 0.29 16 4 C 0.13 1.67 5.37 -4.04 -0.02 1.65 16 5 N -0.72 -11.00 5.39 -60.29 -0.32 -11.33 16 6 C 0.53 10.82 7.85 -10.98 -0.09 10.74 16 7 O -0.53 -12.76 15.86 5.56 0.09 -12.67 16 8 C -0.15 -3.32 6.16 36.01 0.22 -3.10 16 9 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 10 C -0.53 -15.81 9.50 30.94 0.29 -15.52 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.95 13.22 55.49 0.73 -26.22 16 14 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 N -0.68 -6.22 5.68 -107.99 -0.61 -6.84 16 19 C 0.14 1.23 6.04 -4.98 -0.03 1.20 16 20 C 0.08 0.84 6.72 -82.50 -0.55 0.28 16 21 C -0.26 -2.42 10.74 -39.97 -0.43 -2.85 16 22 C 0.06 0.51 7.49 -81.94 -0.61 -0.10 16 23 N -0.39 -4.19 4.85 -55.72 -0.27 -4.46 16 24 N -0.25 -3.28 12.70 33.63 0.43 -2.85 16 25 C 0.13 0.84 7.78 -2.97 -0.02 0.81 16 26 C -0.13 -0.48 7.17 -25.19 -0.18 -0.66 16 27 C -0.07 -0.31 6.86 -26.71 -0.18 -0.49 16 28 H 0.06 0.33 7.45 -51.93 -0.39 -0.06 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 5.54 8.14 -40.82 -0.33 5.21 16 34 H 0.09 1.86 8.14 -51.91 -0.42 1.44 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.35 3.13 8.46 -39.29 -0.33 2.80 16 38 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.05 0.35 7.44 -51.93 -0.39 -0.04 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -38.58 397.44 -10.05 -48.63 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.30 Total: 3.07 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.55 Total: -6.43 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.05 Total: -51.69 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.58 -10.05 -48.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266924303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.918 kcal (2) G-P(sol) polarization free energy of solvation -38.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds