Wall clock time and date at job start Tue Mar 31 2020 21:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47246 * 119.99969 * 2 1 3 5 5 N 1.46503 * 109.47252 * 175.00366 * 4 2 1 6 6 C 1.34779 * 119.99979 * 179.97438 * 5 4 2 7 7 O 1.21274 * 119.99744 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99793 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47148 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00184 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00101 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00101 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99866 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46905 * 90.00063 * 14 12 10 16 16 H 1.48496 * 109.46956 * 209.99652 * 14 12 10 17 17 H 1.48498 * 109.47274 * 330.00499 * 14 12 10 18 18 N 1.46899 * 109.47398 * 240.00352 * 2 1 3 19 19 C 1.46900 * 111.00496 * 84.99944 * 18 2 1 20 20 C 1.50698 * 109.47214 * 180.02562 * 19 18 2 21 21 C 1.39780 * 125.89247 * 95.02152 * 20 19 18 22 22 C 1.35538 * 107.89186 * 180.02562 * 21 20 19 23 23 N 1.34708 * 107.88612 * 359.80889 * 22 21 20 24 24 N 1.30704 * 125.89402 * 275.01848 * 20 19 18 25 25 C 1.47143 * 111.01564 * 180.28687 * 23 22 21 26 26 C 1.54372 * 105.57074 * 342.88554 * 25 23 22 27 27 C 1.51430 * 141.97526 * 179.81602 * 22 21 20 28 28 H 1.08996 * 109.47317 * 60.00390 * 1 2 3 29 29 H 1.09007 * 109.46662 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47097 * 299.99838 * 1 2 3 31 31 H 1.09004 * 109.47120 * 295.00214 * 4 2 1 32 32 H 1.08995 * 109.47335 * 55.00144 * 4 2 1 33 33 H 0.97001 * 119.99764 * 0.02562 * 5 4 2 34 34 H 1.09004 * 109.47192 * 300.00334 * 8 6 5 35 35 H 1.08995 * 109.47058 * 60.00139 * 8 6 5 36 36 H 0.96996 * 120.00162 * 180.02562 * 13 12 10 37 37 H 1.00903 * 110.99570 * 321.04020 * 18 2 1 38 38 H 1.09001 * 109.47094 * 59.99916 * 19 18 2 39 39 H 1.09001 * 109.46587 * 300.00407 * 19 18 2 40 40 H 1.07997 * 126.05686 * 0.03801 * 21 20 19 41 41 H 1.09003 * 110.22984 * 223.86725 * 25 23 22 42 42 H 1.08998 * 110.23083 * 101.91142 * 25 23 22 43 43 H 1.08997 * 110.97688 * 267.60315 * 26 25 23 44 44 H 1.09002 * 110.97682 * 143.83325 * 26 25 23 45 45 H 1.09001 * 110.48851 * 77.84534 * 27 22 21 46 46 H 1.09000 * 110.48580 * 315.20359 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8832 3.1399 8 6 5.6750 -1.5367 2.1306 9 16 6.2784 -2.3898 3.6085 10 6 8.0101 -2.3768 3.2838 11 1 8.3864 -1.9236 2.3786 12 6 8.8908 -2.9490 4.1914 13 7 8.4321 -3.5018 5.2944 14 14 10.7266 -2.9358 3.8467 15 1 11.3286 -1.7041 4.4177 16 1 11.3556 -4.1284 4.4689 17 1 10.9551 -2.9641 2.3797 18 7 2.0197 -0.6924 -1.1994 19 6 2.0825 0.2227 -2.3469 20 6 2.5875 -0.5217 -3.5560 21 6 1.7952 -1.1158 -4.5425 22 6 2.6217 -1.6830 -5.4547 23 7 3.8900 -1.4532 -5.0632 24 7 3.8418 -0.7232 -3.8632 25 6 4.8496 -2.0370 -6.0137 26 6 4.0402 -3.0517 -6.8493 27 6 2.6098 -2.4754 -6.7451 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9824 -0.4620 0.4319 34 1 5.9630 -2.1003 1.2431 35 1 6.1098 -0.5383 2.0840 36 1 9.0475 -3.9014 5.9288 37 1 1.4496 -1.4979 -1.4100 38 1 2.7589 1.0463 -2.1182 39 1 1.0871 0.6164 -2.5525 40 1 0.7156 -1.1217 -4.5727 41 1 5.6505 -2.5450 -5.4765 42 1 5.2609 -1.2606 -6.6588 43 1 4.0921 -4.0481 -6.4105 44 1 4.3810 -3.0648 -7.8845 45 1 2.3991 -1.8223 -7.5920 46 1 1.8771 -3.2806 -6.6917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266924303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:20 Heat of formation + Delta-G solvation = 19.087341 kcal Electronic energy + Delta-G solvation = -25785.872734 eV Core-core repulsion = 22030.262171 eV Total energy + Delta-G solvation = -3755.610563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61758 -40.60141 -38.63563 -37.19102 -35.08611 -34.59472 -32.70009 -31.64186 -30.83540 -29.84650 -27.95621 -27.74169 -26.76969 -25.77919 -22.53989 -22.04455 -21.57765 -21.18543 -20.44734 -19.78458 -17.73188 -17.56606 -17.40644 -16.98995 -16.89184 -16.72922 -16.26547 -16.01691 -15.65534 -15.30435 -14.93180 -14.61318 -14.49837 -14.39835 -14.19286 -14.02377 -13.79316 -13.64862 -13.47360 -13.23295 -13.17566 -13.14635 -12.89541 -12.76223 -12.59147 -12.46618 -12.40220 -12.00017 -11.85649 -11.72539 -11.42842 -11.15324 -10.92514 -10.29684 -10.08472 -9.98954 -9.49671 -9.34740 -8.67544 -8.35529 -6.13712 0.91649 1.26434 1.41194 1.44040 1.45846 1.57437 1.66177 1.73149 2.26138 2.39234 2.97947 3.14592 3.26939 3.34407 3.61976 3.74412 3.85846 3.90729 4.01134 4.07411 4.16192 4.26781 4.29809 4.40083 4.44338 4.49860 4.56158 4.58587 4.67438 4.68729 4.81352 4.84820 4.86781 4.94675 4.98702 5.01903 5.11300 5.24860 5.30112 5.40304 5.54194 5.74150 5.96172 6.02008 6.18884 6.39422 6.60373 6.87773 7.05166 7.31207 8.73929 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.002438 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.411705 B =11483.651200 C =14042.899445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 H 0.098 0.902 4 C 0.130 3.870 5 N -0.699 5.699 6 C 0.531 3.469 7 O -0.571 6.571 8 C -0.128 4.128 9 S -0.147 6.147 10 C -0.548 4.548 11 H 0.079 0.921 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 1.000 3.000 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.689 5.689 19 C 0.150 3.850 20 C 0.071 3.929 21 C -0.274 4.274 22 C 0.054 3.946 23 N -0.407 5.407 24 N -0.307 5.307 25 C 0.113 3.887 26 C -0.120 4.120 27 C -0.063 4.063 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.414 0.586 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.272 0.728 37 H 0.348 0.652 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.113 0.887 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 7.057 -31.050 36.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.024 4.024 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.352 5.352 6 C 0.316 3.684 7 O -0.450 6.450 8 C -0.279 4.279 9 S 0.080 5.920 10 C -0.696 4.696 11 H 0.097 0.903 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.322 5.322 19 C 0.019 3.981 20 C -0.095 4.095 21 C -0.304 4.304 22 C -0.076 4.076 23 N -0.190 5.190 24 N -0.129 5.129 25 C -0.006 4.006 26 C -0.158 4.158 27 C -0.102 4.102 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.178 0.822 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.152 0.848 45 H 0.131 0.869 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.761 6.526 -28.829 33.497 hybrid contribution 0.347 0.429 -1.348 1.457 sum -15.413 6.956 -30.177 34.592 Atomic orbital electron populations 1.22358 0.94042 1.03082 1.03746 1.21715 0.94688 0.98010 0.87977 0.88441 1.21474 0.79159 1.00574 0.98193 1.45620 1.08065 1.58923 1.22553 1.19993 0.88732 0.77309 0.82350 1.90664 1.70383 1.48970 1.34997 1.23347 0.95348 1.05403 1.03844 1.85473 1.05746 1.75156 1.25587 1.23196 0.91768 1.44501 1.10141 0.90293 1.26147 1.05313 0.93710 0.93993 1.70181 1.37422 1.36462 1.10614 0.84936 0.75683 0.78265 0.78969 1.19133 1.19988 1.18449 1.60348 1.58643 1.09911 1.03260 1.20226 1.00324 0.93098 0.84409 1.22475 0.90082 0.99379 0.97610 1.20845 1.00922 1.11057 0.97557 1.22987 0.86985 0.99333 0.98258 1.50509 1.08399 1.42291 1.17765 1.77324 1.21509 1.16278 0.97834 1.22713 0.91886 0.97233 0.88809 1.22857 0.92788 0.97792 1.02376 1.21072 0.98907 0.99082 0.91135 0.90478 0.92031 0.90994 0.91510 0.92934 0.74914 0.88246 0.87646 0.91914 0.83239 0.89872 0.90415 0.82154 0.89653 0.88226 0.89404 0.84840 0.86883 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.16 71.98 0.66 -1.22 16 2 C 0.09 1.32 2.75 44.91 0.12 1.44 16 3 H 0.10 1.34 7.80 -2.38 -0.02 1.32 16 4 C 0.13 3.14 5.37 86.38 0.46 3.60 16 5 N -0.70 -20.84 5.39 -463.06 -2.50 -23.33 16 6 C 0.53 21.85 7.85 87.66 0.69 22.54 16 7 O -0.57 -28.41 15.86 -3.01 -0.05 -28.45 16 8 C -0.13 -5.68 6.16 71.24 0.44 -5.25 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.55 -32.92 9.50 67.95 0.65 -32.28 16 11 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -57.55 13.22 21.65 0.29 -57.26 16 14 Si 1.00 45.24 29.55 68.60 2.03 47.26 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 N -0.69 -11.80 5.68 -495.58 -2.81 -14.61 16 19 C 0.15 2.35 6.04 85.56 0.52 2.87 16 20 C 0.07 1.50 6.72 43.10 0.29 1.79 16 21 C -0.27 -4.91 10.74 22.02 0.24 -4.67 16 22 C 0.05 0.90 7.49 41.73 0.31 1.21 16 23 N -0.41 -8.58 4.85 -330.20 -1.60 -10.18 16 24 N -0.31 -8.26 12.70 -47.51 -0.60 -8.86 16 25 C 0.11 1.39 7.78 86.72 0.67 2.06 16 26 C -0.12 -0.58 7.17 31.59 0.23 -0.35 16 27 C -0.06 -0.43 6.86 30.61 0.21 -0.22 16 28 H 0.08 0.61 7.45 -2.39 -0.02 0.59 16 29 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 10.89 8.14 -92.71 -0.75 10.14 16 34 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 35 H 0.11 4.27 8.14 -2.40 -0.02 4.25 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.35 5.88 8.46 -89.69 -0.76 5.12 16 38 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.08 0.82 7.44 -2.39 -0.02 0.80 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -87.25 397.44 -0.98 -88.23 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.52 Total: 24.23 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.95 Total: -7.23 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -7.23 Total: -114.25 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -87.25 -0.98 -88.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266924303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.316 kcal (2) G-P(sol) polarization free energy of solvation -87.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds