Wall clock time and date at job start Tue Mar 31 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.47380 * 300.00849 * 18 16 15 20 20 C 1.53006 * 109.46543 * 60.00514 * 18 16 15 21 21 C 1.52993 * 109.47630 * 180.02562 * 18 16 15 22 22 C 1.50701 * 109.47519 * 175.00098 * 21 18 16 23 23 C 1.38236 * 120.00773 * 264.73046 * 22 21 18 24 24 C 1.38218 * 120.01145 * 179.76734 * 23 22 21 25 25 C 1.38265 * 120.02473 * 0.50339 * 24 23 22 26 26 C 1.38190 * 120.01907 * 359.74840 * 25 24 23 27 27 C 1.38330 * 120.00369 * 85.00059 * 22 21 18 28 28 Cl 1.73600 * 120.01520 * 359.95998 * 27 22 21 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 37 37 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 38 38 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 39 39 H 1.09006 * 109.47036 * 180.02562 * 20 18 16 40 40 H 1.09001 * 109.47327 * 299.99969 * 20 18 16 41 41 H 1.08993 * 109.47441 * 60.00168 * 20 18 16 42 42 H 1.08996 * 109.47217 * 295.00557 * 21 18 16 43 43 H 1.09003 * 109.47177 * 55.00298 * 21 18 16 44 44 H 1.07998 * 119.99362 * 359.97438 * 23 22 21 45 45 H 1.07998 * 119.99109 * 180.27578 * 24 23 22 46 46 H 1.08005 * 119.99387 * 179.76639 * 25 24 23 47 47 H 1.07998 * 120.01516 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.0575 -1.2029 -7.0370 12 1 2.3063 0.8390 -7.4264 13 1 3.3985 -1.0764 -6.4172 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 2.0327 1.3636 4.8473 20 6 0.0727 0.4761 4.9545 21 6 2.1074 -0.3558 6.1425 22 6 1.8172 0.4829 7.3605 23 6 2.7867 1.3304 7.8632 24 6 2.5190 2.1033 8.9774 25 6 1.2852 2.0216 9.5959 26 6 0.3169 1.1709 9.0974 27 6 0.5826 0.4007 7.9789 28 17 -0.6334 -0.6678 7.3516 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8593 -2.3518 35 1 0.7072 1.9230 -5.4823 36 1 1.6054 -1.7197 1.2953 37 1 3.1263 -0.7993 1.2057 38 1 1.1483 0.8592 2.3518 39 1 -0.2154 1.0397 5.8420 40 1 -0.2903 0.9902 4.0644 41 1 -0.3626 -0.5221 5.0004 42 1 1.6054 -1.3187 6.2365 43 1 3.1826 -0.5134 6.0577 44 1 3.7523 1.3911 7.3834 45 1 3.2752 2.7686 9.3673 46 1 1.0778 2.6229 10.4688 47 1 -0.6467 1.1068 9.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268005237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:49 Heat of formation + Delta-G solvation = -25.893457 kcal Electronic energy + Delta-G solvation = -26113.858133 eV Core-core repulsion = 22321.960599 eV Total energy + Delta-G solvation = -3791.897535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42595 -39.52268 -36.93907 -36.81679 -35.21150 -34.37153 -32.55024 -31.43593 -31.00567 -29.94657 -27.11085 -26.59243 -25.48477 -23.87759 -23.04124 -22.39005 -21.38398 -20.33486 -19.52315 -17.69766 -17.27546 -16.78760 -16.25009 -16.12554 -15.62673 -15.44859 -14.98084 -14.55874 -14.41449 -14.30669 -14.02282 -13.65248 -13.53508 -13.29497 -12.96728 -12.88361 -12.56382 -12.54443 -12.27796 -12.05470 -12.00551 -11.86924 -11.77909 -11.34959 -11.25124 -11.05609 -10.90783 -10.69443 -10.62701 -10.56622 -10.40569 -10.06196 -9.78721 -9.64237 -9.32704 -9.03587 -8.99614 -8.87442 -6.92035 -5.76986 -3.05282 0.70654 0.80986 1.77486 2.62642 3.08210 3.26680 3.44052 3.49330 3.50920 4.24767 4.32552 4.51692 4.53516 4.59620 4.68087 4.77026 4.87275 4.93418 5.03877 5.16437 5.21333 5.23272 5.36559 5.39062 5.48450 5.51302 5.58027 5.59272 5.78284 5.82687 5.87877 5.91841 5.96280 5.97708 6.01106 6.06836 6.12097 6.25667 6.35290 6.39971 6.51095 6.65687 6.77830 6.87418 7.50354 7.70729 8.21251 8.42266 9.53477 10.10886 10.45704 11.46026 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001763 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.324093 B =15876.362811 C =16045.343129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.723 5.723 16 C 0.516 3.484 17 O -0.543 6.543 18 C -0.102 4.102 19 H 0.097 0.903 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.068 4.068 23 C -0.105 4.105 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.110 4.110 27 C -0.034 4.034 28 Cl -0.062 7.062 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 2.528 32.427 32.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.302 3.698 17 O -0.420 6.420 18 C -0.124 4.124 19 H 0.115 0.885 20 C -0.208 4.208 21 C -0.105 4.105 22 C -0.069 4.069 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.061 4.061 28 Cl -0.033 7.033 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.979 1.572 32.289 32.342 hybrid contribution -0.300 0.379 -1.078 1.181 sum -1.279 1.951 31.211 31.298 Atomic orbital electron populations 1.21787 0.94681 1.01923 1.01454 1.21550 0.96702 1.00463 0.94216 0.90582 1.20575 0.96590 0.94220 0.85399 1.42340 1.66817 1.27771 1.00602 1.19246 1.28648 1.05363 0.83701 0.91151 1.24739 1.01087 0.97391 0.97874 1.69659 1.43703 1.16497 1.28479 0.86172 0.78038 0.77493 0.84396 1.21734 1.21791 1.20762 1.21414 1.00077 0.95285 0.82985 1.46072 1.57583 1.27884 1.05935 1.20511 0.79116 0.85649 0.84557 1.90700 1.40043 1.24512 1.86761 1.21246 0.98438 1.00189 0.92487 0.88466 1.22248 0.92726 1.03120 1.02736 1.20478 1.03132 0.97882 0.88993 1.19806 0.92099 0.97812 0.97182 1.21105 0.99086 0.95634 0.96456 1.21275 0.97149 0.98979 0.95702 1.21126 0.93283 0.98618 1.00196 1.21080 1.00438 0.96189 0.95140 1.20871 0.90934 0.97025 0.97224 1.98381 1.54576 1.64210 1.86143 0.91173 0.92838 0.93926 0.96008 0.96151 0.78214 0.93546 0.91400 0.91406 0.76518 0.91071 0.92311 0.91449 0.89420 0.89543 0.84953 0.85360 0.85194 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.35 5.33 -59.91 -0.32 -18.66 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.13 1.74 5.06 -4.05 -0.02 1.72 16 15 N -0.72 -8.39 5.18 -60.30 -0.31 -8.70 16 16 C 0.52 6.35 7.15 -10.99 -0.08 6.28 16 17 O -0.54 -8.73 15.92 5.56 0.09 -8.64 16 18 C -0.10 -0.93 2.71 -91.77 -0.25 -1.17 16 19 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.15 -1.26 7.32 37.16 0.27 -0.98 16 21 C -0.07 -0.62 3.97 -27.89 -0.11 -0.73 16 22 C -0.07 -0.55 4.86 -104.59 -0.51 -1.06 16 23 C -0.10 -0.71 9.68 -39.59 -0.38 -1.09 16 24 C -0.11 -0.64 10.05 -39.58 -0.40 -1.04 16 25 C -0.11 -0.64 10.04 -39.59 -0.40 -1.04 16 26 C -0.11 -0.73 9.83 -39.55 -0.39 -1.12 16 27 C -0.03 -0.27 5.18 -39.50 -0.20 -0.48 16 28 Cl -0.06 -0.52 23.13 -51.86 -1.20 -1.72 16 29 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.51 7.18 -51.93 -0.37 0.13 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 10.00 6.85 -40.82 -0.28 9.72 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.80 7.07 -40.82 -0.29 3.51 16 39 H 0.07 0.56 5.29 -51.93 -0.27 0.29 16 40 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 41 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 42 H 0.09 0.92 7.13 -51.93 -0.37 0.55 16 43 H 0.09 0.82 7.86 -51.93 -0.41 0.42 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 47 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -32.73 390.11 -10.10 -42.82 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.31 Total: 7.57 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.63 Total: -8.59 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.09 Total: -54.81 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.20 Total: -1.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.73 -10.10 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268005237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.927 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds