Wall clock time and date at job start Tue Mar 31 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47257 * 2 1 4 4 C 1.53001 * 109.47175 * 239.99847 * 2 1 3 5 5 C 1.50702 * 109.47148 * 65.00470 * 4 2 1 6 6 C 1.38237 * 120.00143 * 265.02071 * 5 4 2 7 7 C 1.38221 * 120.01233 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.02714 * 359.97438 * 7 6 5 9 9 C 1.38195 * 120.01003 * 359.97438 * 8 7 6 10 10 C 1.38326 * 120.01026 * 84.99671 * 5 4 2 11 11 Cl 1.73599 * 120.01212 * 0.04448 * 10 5 4 12 12 C 1.50696 * 109.47079 * 119.99629 * 2 1 3 13 13 O 1.21283 * 119.99985 * 119.99859 * 12 2 1 14 14 N 1.34776 * 120.00465 * 300.00142 * 12 2 1 15 15 C 1.46502 * 120.00156 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.46795 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.47069 * 304.99411 * 16 15 14 18 18 C 1.52998 * 109.47526 * 65.00064 * 16 15 14 19 19 C 1.52999 * 109.47244 * 185.00304 * 16 15 14 20 20 N 1.46494 * 109.47600 * 175.00005 * 19 16 15 21 21 C 1.36936 * 120.00050 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00293 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99815 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00046 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99810 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47321 * 59.99554 * 25 23 21 27 27 H 1.48499 * 109.46790 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47097 * 299.99737 * 25 23 21 29 29 H 1.09000 * 109.47114 * 300.00115 * 1 2 3 30 30 H 1.09006 * 109.46949 * 60.00367 * 1 2 3 31 31 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47347 * 305.00035 * 4 2 1 33 33 H 1.09001 * 109.46925 * 185.00056 * 4 2 1 34 34 H 1.08003 * 119.99804 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.98422 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.99487 * 180.27557 * 8 7 6 37 37 H 1.07996 * 120.00042 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99333 * 0.02562 * 14 12 2 39 39 H 1.09005 * 109.47011 * 299.99911 * 15 14 12 40 40 H 1.08995 * 109.47341 * 60.00258 * 15 14 12 41 41 H 1.09005 * 109.46655 * 299.99750 * 18 16 15 42 42 H 1.08999 * 109.47096 * 59.99890 * 18 16 15 43 43 H 1.09000 * 109.47106 * 179.97438 * 18 16 15 44 44 H 1.09007 * 109.46895 * 294.99712 * 19 16 15 45 45 H 1.08998 * 109.47277 * 54.99073 * 19 16 15 46 46 H 0.97003 * 119.99687 * 359.97438 * 20 19 16 47 47 H 0.97001 * 119.99813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4860 -0.2735 -3.1597 7 6 0.1199 0.4406 -4.2851 8 6 0.9088 1.4861 -4.7281 9 6 2.0636 1.8181 -4.0454 10 6 2.4314 1.1026 -2.9196 11 17 3.8829 1.5178 -2.0626 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6842 -0.2198 4.9000 17 1 1.9727 0.8305 4.8567 18 6 0.1593 -0.3277 4.9639 19 6 2.2938 -0.8650 6.1461 20 7 1.9006 -0.1019 7.3332 21 6 2.3311 -0.4938 8.5727 22 1 2.9601 -1.3658 8.6752 23 6 1.9589 0.2297 9.6975 24 7 1.1929 1.2926 9.5725 25 14 2.5455 -0.3054 11.3884 26 1 4.0299 -0.2884 11.4257 27 1 2.0132 0.6266 12.4147 28 1 2.0591 -1.6802 11.6689 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 -0.1309 -1.0898 -2.8140 35 1 -0.7831 0.1822 -4.8182 36 1 0.6200 2.0465 -5.6049 37 1 2.6794 2.6350 -4.3913 38 1 1.1487 0.5386 2.5435 39 1 1.8309 -1.9683 3.6506 40 1 3.2846 -0.9412 3.6510 41 1 -0.2749 0.1321 4.0761 42 1 -0.1291 -1.3779 5.0072 43 1 -0.2042 0.1856 5.8541 44 1 1.9340 -1.8899 6.2375 45 1 3.3803 -0.8678 6.0593 46 1 1.3360 0.6815 7.2411 47 1 0.9325 1.7979 10.3585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268005239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:52 Heat of formation + Delta-G solvation = -33.505185 kcal Electronic energy + Delta-G solvation = -26047.404160 eV Core-core repulsion = 22255.176557 eV Total energy + Delta-G solvation = -3792.227604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39915 -39.51719 -36.92296 -36.76660 -35.25066 -34.36901 -32.54606 -31.29187 -31.13438 -29.94817 -27.14017 -26.58949 -25.47076 -23.78345 -23.08979 -22.38315 -21.39429 -20.33750 -19.52483 -17.63617 -17.28326 -16.80080 -16.21156 -16.13355 -15.61583 -15.46190 -14.85763 -14.57420 -14.29342 -14.24845 -13.97621 -13.64380 -13.53087 -13.33604 -13.03184 -12.91159 -12.57090 -12.50022 -12.27826 -12.04730 -11.97251 -11.89168 -11.80584 -11.50886 -11.22909 -11.05728 -10.99877 -10.89490 -10.69169 -10.56374 -10.41171 -10.08810 -9.78415 -9.63366 -9.31980 -9.04940 -9.00025 -8.86730 -6.91890 -5.76563 -3.04870 0.71632 0.81359 1.80471 2.62873 3.08351 3.26816 3.44978 3.49133 3.50314 4.25014 4.33003 4.49636 4.52593 4.59891 4.67877 4.73547 4.87705 4.93552 5.03403 5.15941 5.20084 5.23518 5.38193 5.39211 5.40668 5.45634 5.58046 5.58437 5.78542 5.81128 5.83122 5.88036 5.96056 5.97343 6.01140 6.06029 6.12205 6.25320 6.35751 6.39694 6.51091 6.65550 6.78036 6.87474 7.50295 7.70528 8.21360 8.42642 9.53800 10.11221 10.46093 11.46374 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.001788 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.578882 B =15654.066461 C =15920.368500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.098 0.902 4 C -0.067 4.067 5 C -0.068 4.068 6 C -0.103 4.103 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.109 4.109 10 C -0.035 4.035 11 Cl -0.064 7.064 12 C 0.516 3.484 13 O -0.542 6.542 14 N -0.724 5.724 15 C 0.126 3.874 16 C -0.110 4.110 17 H 0.076 0.924 18 C -0.141 4.141 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 1.082 -32.332 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.122 4.122 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.062 4.062 11 Cl -0.035 7.035 12 C 0.302 3.698 13 O -0.419 6.419 14 N -0.375 5.375 15 C 0.003 3.997 16 C -0.130 4.130 17 H 0.094 0.906 18 C -0.198 4.198 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.828 0.310 -32.164 32.290 hybrid contribution -0.010 0.543 1.081 1.210 sum -2.839 0.853 -31.083 31.224 Atomic orbital electron populations 1.21859 0.92717 1.02917 1.02934 1.21238 0.97733 1.01044 0.92565 0.88386 1.20473 1.03107 0.98026 0.88837 1.19794 0.94491 0.95190 0.97397 1.21096 0.95686 1.00143 0.95227 1.21269 0.99857 0.95645 0.96468 1.21121 0.94386 0.97701 0.99990 1.21075 0.97646 0.99851 0.94223 1.20905 0.90762 0.98424 0.96064 1.98393 1.35842 1.92662 1.76594 1.20488 0.80138 0.84597 0.84577 1.90702 1.37943 1.26403 1.86870 1.46075 1.53562 1.32100 1.05769 1.21414 0.99183 0.96260 0.82886 1.21549 0.96615 1.00549 0.94240 0.90578 1.21785 0.94629 1.01955 1.01443 1.20575 0.96252 0.94449 0.85507 1.42328 1.61162 1.32763 1.01257 1.19200 1.24981 1.08748 0.84120 0.91207 1.24737 1.00546 0.97856 0.97900 1.69644 1.40449 1.19392 1.28864 0.86250 0.78210 0.77542 0.84086 1.21272 1.21701 1.21275 0.91838 0.91268 0.91840 0.89752 0.89211 0.84986 0.85393 0.85215 0.84995 0.76545 0.91387 0.91409 0.93942 0.92842 0.91174 0.96018 0.96155 0.78215 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.74 37.16 0.32 -0.72 16 2 C -0.10 -0.95 2.71 -91.77 -0.25 -1.20 16 3 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 4 C -0.07 -0.62 3.69 -27.88 -0.10 -0.72 16 5 C -0.07 -0.54 4.57 -104.59 -0.48 -1.02 16 6 C -0.10 -0.67 8.35 -39.59 -0.33 -1.00 16 7 C -0.11 -0.63 10.05 -39.58 -0.40 -1.03 16 8 C -0.11 -0.64 10.05 -39.59 -0.40 -1.04 16 9 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 10 C -0.03 -0.29 6.31 -39.50 -0.25 -0.54 16 11 Cl -0.06 -0.59 27.21 -51.86 -1.41 -2.00 16 12 C 0.52 6.38 7.15 -10.99 -0.08 6.30 16 13 O -0.54 -8.74 15.92 5.56 0.09 -8.65 16 14 N -0.72 -8.41 5.18 -60.29 -0.31 -8.72 16 15 C 0.13 1.75 5.07 -4.04 -0.02 1.73 16 16 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 17 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 19 C 0.16 3.20 5.65 -4.05 -0.02 3.18 16 20 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 30 H 0.07 0.44 6.51 -51.93 -0.34 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 33 H 0.09 0.98 6.94 -51.93 -0.36 0.62 16 34 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 36 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.40 3.80 7.07 -40.82 -0.29 3.51 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -32.80 397.28 -10.23 -43.03 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.43 Total: 7.22 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.53 Total: -8.24 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.09 Total: -54.85 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.41 Total: -2.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.80 -10.23 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268005239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.527 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds