Wall clock time and date at job start Tue Mar 31 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47257 * 2 1 4 4 C 1.53001 * 109.47175 * 239.99847 * 2 1 3 5 5 C 1.50702 * 109.47148 * 65.00470 * 4 2 1 6 6 C 1.38237 * 120.00143 * 265.02071 * 5 4 2 7 7 C 1.38221 * 120.01233 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.02714 * 359.97438 * 7 6 5 9 9 C 1.38195 * 120.01003 * 359.97438 * 8 7 6 10 10 C 1.38326 * 120.01026 * 84.99671 * 5 4 2 11 11 Cl 1.73599 * 120.01212 * 0.04448 * 10 5 4 12 12 C 1.50696 * 109.47079 * 119.99629 * 2 1 3 13 13 O 1.21283 * 119.99985 * 119.99859 * 12 2 1 14 14 N 1.34776 * 120.00465 * 300.00142 * 12 2 1 15 15 C 1.46502 * 120.00156 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.46795 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.47069 * 304.99411 * 16 15 14 18 18 C 1.52998 * 109.47526 * 65.00064 * 16 15 14 19 19 C 1.52999 * 109.47244 * 185.00304 * 16 15 14 20 20 N 1.46494 * 109.47600 * 175.00005 * 19 16 15 21 21 C 1.36936 * 120.00050 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00293 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99815 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00046 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99810 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47321 * 59.99554 * 25 23 21 27 27 H 1.48499 * 109.46790 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47097 * 299.99737 * 25 23 21 29 29 H 1.09000 * 109.47114 * 300.00115 * 1 2 3 30 30 H 1.09006 * 109.46949 * 60.00367 * 1 2 3 31 31 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47347 * 305.00035 * 4 2 1 33 33 H 1.09001 * 109.46925 * 185.00056 * 4 2 1 34 34 H 1.08003 * 119.99804 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.98422 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.99487 * 180.27557 * 8 7 6 37 37 H 1.07996 * 120.00042 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99333 * 0.02562 * 14 12 2 39 39 H 1.09005 * 109.47011 * 299.99911 * 15 14 12 40 40 H 1.08995 * 109.47341 * 60.00258 * 15 14 12 41 41 H 1.09005 * 109.46655 * 299.99750 * 18 16 15 42 42 H 1.08999 * 109.47096 * 59.99890 * 18 16 15 43 43 H 1.09000 * 109.47106 * 179.97438 * 18 16 15 44 44 H 1.09007 * 109.46895 * 294.99712 * 19 16 15 45 45 H 1.08998 * 109.47277 * 54.99073 * 19 16 15 46 46 H 0.97003 * 119.99687 * 359.97438 * 20 19 16 47 47 H 0.97001 * 119.99813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4860 -0.2735 -3.1597 7 6 0.1199 0.4406 -4.2851 8 6 0.9088 1.4861 -4.7281 9 6 2.0636 1.8181 -4.0454 10 6 2.4314 1.1026 -2.9196 11 17 3.8829 1.5178 -2.0626 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6842 -0.2198 4.9000 17 1 1.9727 0.8305 4.8567 18 6 0.1593 -0.3277 4.9639 19 6 2.2938 -0.8650 6.1461 20 7 1.9006 -0.1019 7.3332 21 6 2.3311 -0.4938 8.5727 22 1 2.9601 -1.3658 8.6752 23 6 1.9589 0.2297 9.6975 24 7 1.1929 1.2926 9.5725 25 14 2.5455 -0.3054 11.3884 26 1 4.0299 -0.2884 11.4257 27 1 2.0132 0.6266 12.4147 28 1 2.0591 -1.6802 11.6689 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 -0.1309 -1.0898 -2.8140 35 1 -0.7831 0.1822 -4.8182 36 1 0.6200 2.0465 -5.6049 37 1 2.6794 2.6350 -4.3913 38 1 1.1487 0.5386 2.5435 39 1 1.8309 -1.9683 3.6506 40 1 3.2846 -0.9412 3.6510 41 1 -0.2749 0.1321 4.0761 42 1 -0.1291 -1.3779 5.0072 43 1 -0.2042 0.1856 5.8541 44 1 1.9340 -1.8899 6.2375 45 1 3.3803 -0.8678 6.0593 46 1 1.3360 0.6815 7.2411 47 1 0.9325 1.7979 10.3585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268005239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:52 Heat of formation + Delta-G solvation = -52.482189 kcal Electronic energy + Delta-G solvation = -26048.227065 eV Core-core repulsion = 22255.176557 eV Total energy + Delta-G solvation = -3793.050508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23030 -40.22632 -38.29752 -37.38129 -36.06344 -35.91517 -34.10868 -32.21252 -31.64547 -31.48404 -27.86352 -27.67152 -27.14563 -24.95545 -23.86534 -23.55609 -22.12302 -21.52719 -20.64654 -19.19065 -18.26239 -17.72278 -17.29515 -16.86300 -16.52078 -16.42678 -16.16617 -15.80086 -15.47366 -15.33585 -14.90500 -14.76049 -14.65548 -14.31850 -14.07639 -13.88415 -13.66108 -13.55861 -13.42642 -13.13185 -12.95950 -12.77657 -12.59340 -12.48217 -12.34286 -12.22181 -12.20442 -12.06880 -11.99423 -11.90155 -11.70765 -11.65372 -11.61746 -10.94072 -10.77421 -10.08451 -9.81072 -9.58902 -8.99954 -7.95755 -5.24080 0.21569 0.33510 1.21870 1.47197 1.50024 1.56158 1.64053 2.16901 2.56474 2.71534 3.37608 3.55876 3.72479 3.78506 3.82463 3.95771 3.99564 4.07182 4.09850 4.20710 4.32960 4.40252 4.43334 4.47482 4.54501 4.70381 4.71298 4.76257 4.80786 4.85856 4.90989 4.93749 5.04452 5.06050 5.12388 5.16569 5.27294 5.33760 5.34451 5.42116 5.48883 5.49604 5.49892 5.53746 5.91800 6.26761 6.54956 7.24192 7.33628 8.08726 8.33381 9.27395 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.001788 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.578882 B =15654.066461 C =15920.368500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.103 0.897 4 C -0.062 4.062 5 C -0.079 4.079 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.051 4.051 11 Cl -0.083 7.083 12 C 0.515 3.485 13 O -0.583 6.583 14 N -0.714 5.714 15 C 0.138 3.862 16 C -0.094 4.094 17 H 0.077 0.923 18 C -0.134 4.134 19 C 0.156 3.844 20 N -0.741 5.741 21 C -0.249 4.249 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.973 3.027 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.278 1.278 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.413 0.587 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.377 0.623 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 1.211 -34.070 34.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.099 4.099 5 C -0.080 4.080 6 C -0.124 4.124 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.137 4.137 10 C -0.077 4.077 11 Cl -0.054 7.054 12 C 0.303 3.697 13 O -0.463 6.463 14 N -0.366 5.366 15 C 0.014 3.986 16 C -0.113 4.113 17 H 0.095 0.905 18 C -0.192 4.192 19 C 0.029 3.971 20 N -0.384 5.384 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.802 3.198 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.204 1.204 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.209 0.791 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.154 0.437 -33.930 34.186 hybrid contribution 0.401 0.472 1.508 1.630 sum -3.753 0.909 -32.422 32.651 Atomic orbital electron populations 1.21860 0.90732 1.03307 1.04071 1.21209 0.99192 1.00544 0.90659 0.87888 1.20354 1.01628 0.98224 0.89739 1.19724 0.95457 0.95430 0.97388 1.21306 0.95155 1.00554 0.95394 1.21612 1.00502 0.94942 0.95910 1.21470 0.93534 0.97623 1.00318 1.21290 0.98416 1.00063 0.93898 1.21065 0.90466 0.99332 0.96873 1.98382 1.37088 1.92833 1.77121 1.21088 0.79223 0.84055 0.85379 1.90686 1.39781 1.28388 1.87431 1.45943 1.53432 1.32263 1.04974 1.21115 0.98470 0.96028 0.83030 1.21327 0.97048 1.00170 0.92755 0.90492 1.21717 0.93764 1.01895 1.01787 1.20724 0.96269 0.94227 0.85852 1.42490 1.60982 1.32964 1.01971 1.19596 1.24413 1.08570 0.85523 0.90921 1.25549 1.01276 0.98250 1.01548 1.69793 1.41901 1.20567 1.29489 0.85216 0.77855 0.77200 0.79508 1.20551 1.21951 1.20449 0.90861 0.89978 0.91812 0.90057 0.91523 0.83600 0.82818 0.82738 0.84127 0.74996 0.91766 0.92522 0.90448 0.92923 0.93900 0.96070 0.96471 0.79059 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.74 71.98 0.63 -1.08 16 2 C -0.09 -1.62 2.71 -11.54 -0.03 -1.65 16 3 H 0.10 1.69 7.95 -2.38 -0.02 1.67 16 4 C -0.06 -1.12 3.69 29.85 0.11 -1.01 16 5 C -0.08 -1.19 4.57 -19.84 -0.09 -1.28 16 6 C -0.11 -1.13 8.35 22.27 0.19 -0.94 16 7 C -0.11 -0.88 10.05 22.27 0.22 -0.66 16 8 C -0.11 -0.94 10.05 22.27 0.22 -0.71 16 9 C -0.12 -1.43 9.83 22.29 0.22 -1.21 16 10 C -0.05 -0.81 6.31 22.32 0.14 -0.67 16 11 Cl -0.08 -1.56 27.21 -2.72 -0.07 -1.63 16 12 C 0.51 12.42 7.15 87.66 0.63 13.05 16 13 O -0.58 -19.00 15.92 -3.04 -0.05 -19.05 16 14 N -0.71 -15.68 5.18 -463.06 -2.40 -18.08 16 15 C 0.14 3.74 5.07 86.38 0.44 4.17 16 16 C -0.09 -2.83 2.46 -10.79 -0.03 -2.86 16 17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.13 -3.77 8.94 71.98 0.64 -3.12 16 19 C 0.16 6.26 5.65 86.38 0.49 6.75 16 20 N -0.74 -37.60 5.33 -343.45 -1.83 -39.43 16 21 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 25 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 H 0.07 0.74 7.56 -2.39 -0.02 0.73 16 30 H 0.08 0.81 6.51 -2.38 -0.02 0.79 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 33 H 0.07 1.51 6.94 -2.39 -0.02 1.50 16 34 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 36 H 0.15 0.50 8.06 -2.91 -0.02 0.47 16 37 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.41 6.93 7.07 -92.71 -0.66 6.28 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.61 7.18 -2.38 -0.02 1.59 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.04 1.45 7.18 -2.39 -0.02 1.44 16 44 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.38 19.97 6.85 -92.71 -0.64 19.33 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -71.32 397.28 2.73 -68.59 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.32 Total: 28.06 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.09 Total: -8.27 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.94 Total: -116.14 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -71.32 2.73 -68.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268005239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.105 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds