Wall clock time and date at job start Tue Mar 31 2020 21:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.52998 * 109.46846 * 240.00010 * 2 1 3 5 5 N 1.46498 * 109.47071 * 185.00380 * 4 2 1 6 6 C 1.46503 * 119.99824 * 269.99734 * 5 4 2 7 7 C 1.36936 * 120.00258 * 89.99398 * 5 4 2 8 8 H 1.08002 * 120.00417 * 214.43357 * 7 5 4 9 9 C 1.38817 * 119.99957 * 34.44551 * 7 5 4 10 10 N 1.31618 * 119.99999 * 26.93066 * 9 7 5 11 11 Si 1.86801 * 119.99726 * 206.93878 * 9 7 5 12 12 H 1.48502 * 109.47336 * 59.99619 * 11 9 7 13 13 H 1.48498 * 109.47094 * 299.99421 * 11 9 7 14 14 H 1.48498 * 109.46909 * 179.97438 * 11 9 7 15 15 N 1.46503 * 109.47018 * 120.00110 * 2 1 3 16 16 C 1.34778 * 119.99768 * 275.00082 * 15 2 1 17 17 O 1.21280 * 119.99999 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99813 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.55098 * 34.27449 * 18 16 15 20 20 C 1.52998 * 117.49781 * 248.60395 * 18 16 15 21 21 C 1.52998 * 117.49601 * 179.97438 * 18 16 15 22 22 H 1.09005 * 117.50365 * 0.02562 * 21 18 16 23 23 C 1.50703 * 117.49988 * 214.97692 * 21 18 16 24 24 C 1.38231 * 119.98441 * 300.00462 * 23 21 18 25 25 C 1.38190 * 120.04835 * 179.97438 * 24 23 21 26 26 C 1.38501 * 120.02348 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.00958 * 179.97438 * 26 25 24 28 28 C 1.38392 * 119.97803 * 0.02562 * 26 25 24 29 29 C 1.38444 * 119.94589 * 359.76584 * 28 26 25 30 30 F 1.35104 * 120.01346 * 180.22797 * 29 28 26 31 31 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46638 * 299.99981 * 1 2 3 33 33 H 1.08996 * 109.47283 * 59.99589 * 1 2 3 34 34 H 1.08996 * 109.47391 * 64.99946 * 4 2 1 35 35 H 1.09011 * 109.47028 * 304.99691 * 4 2 1 36 36 H 1.08995 * 109.47375 * 265.83097 * 6 5 4 37 37 H 1.08997 * 109.46848 * 25.83434 * 6 5 4 38 38 H 1.09005 * 109.46956 * 145.82451 * 6 5 4 39 39 H 0.97000 * 119.99966 * 5.71073 * 10 9 7 40 40 H 0.96999 * 120.00310 * 94.99523 * 15 2 1 41 41 H 1.09006 * 117.49816 * 0.02562 * 20 18 16 42 42 H 1.08992 * 117.49878 * 144.99702 * 20 18 16 43 43 H 1.07992 * 119.97815 * 359.97438 * 24 23 21 44 44 H 1.08002 * 119.98824 * 179.97438 * 25 24 23 45 45 H 1.07992 * 120.02801 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2339 -1.7613 7 6 4.0849 -1.9159 -0.6022 8 1 5.0125 -1.8042 -0.0604 9 6 3.4857 -3.1641 -0.7024 10 7 2.7117 -3.4420 -1.7300 11 14 3.7778 -4.4492 0.6215 12 1 3.3057 -3.9285 1.9296 13 1 5.2289 -4.7536 0.7043 14 1 3.0305 -5.6871 0.2831 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7286 3.5875 19 1 3.3938 -1.5054 3.4108 20 6 1.6582 -0.9473 4.7318 21 6 2.7743 0.0897 4.8743 22 1 2.4921 1.1417 4.8311 23 6 3.9162 -0.2399 5.8008 24 6 4.0215 -1.5067 6.3440 25 6 5.0683 -1.8106 7.1934 26 6 6.0136 -0.8461 7.5009 27 9 7.0366 -1.1433 8.3318 28 6 5.9092 0.4225 6.9577 29 6 4.8624 0.7244 6.1035 30 9 4.7617 1.9611 5.5687 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.7516 -0.1584 -2.1370 35 1 1.6053 -1.7199 -1.2951 36 1 4.6038 -0.0270 -2.7847 37 1 3.7804 1.1726 -1.7595 38 1 5.2395 0.3451 -1.1642 39 1 2.6256 -2.8068 -2.4581 40 1 2.2490 -1.6318 1.1527 41 1 0.6419 -0.5777 4.5946 42 1 1.7496 -1.8679 5.3080 43 1 3.2852 -2.2594 6.1045 44 1 5.1494 -2.8005 7.6176 45 1 6.6455 1.1752 7.1973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268738812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:30 Heat of formation + Delta-G solvation = -60.202772 kcal Electronic energy + Delta-G solvation = -29673.170966 eV Core-core repulsion = 25327.988988 eV Total energy + Delta-G solvation = -4345.181978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.23170 -49.08856 -40.05784 -38.94281 -36.98607 -35.90497 -33.90974 -31.40103 -31.11325 -30.69052 -30.08984 -26.28910 -25.38950 -24.59914 -24.20544 -23.00551 -21.79372 -20.93057 -19.98043 -19.52320 -18.51143 -17.65208 -17.37943 -16.88800 -16.20751 -16.11142 -15.71611 -15.54868 -15.42914 -14.73077 -14.60711 -14.39387 -14.18840 -14.00521 -13.84434 -13.49414 -13.19706 -13.15659 -12.71237 -12.49467 -12.42027 -12.18358 -12.00043 -11.74129 -11.56971 -11.49768 -11.29980 -11.04705 -10.89092 -10.74603 -10.59309 -10.49327 -10.21121 -10.16981 -9.54366 -9.37612 -9.26332 -8.66854 -8.52570 -8.31722 -6.91446 -6.16882 -3.46350 0.65842 0.75275 2.85099 3.13872 3.29236 3.35937 3.54220 3.61467 3.73360 3.95175 4.18697 4.32968 4.38194 4.43716 4.59071 4.76703 4.84124 4.97196 5.05312 5.10779 5.38204 5.45505 5.49261 5.56886 5.62665 5.67616 5.71406 5.81786 5.82775 5.91759 5.96650 6.01399 6.20455 6.23295 6.30820 6.32525 6.47755 6.50613 6.63179 6.65238 6.72277 7.12482 7.25763 7.95633 8.29134 8.42778 8.86983 9.00440 9.68125 10.15877 11.01644 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.003582 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.976817 B = 7814.121790 C = 8745.153069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.070 0.930 4 C 0.123 3.877 5 N -0.599 5.599 6 C 0.124 3.876 7 C -0.343 4.343 8 H 0.052 0.948 9 C -0.026 4.026 10 N -0.900 5.900 11 Si 1.047 2.953 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.282 1.282 15 N -0.682 5.682 16 C 0.538 3.462 17 O -0.563 6.563 18 C -0.167 4.167 19 H 0.127 0.873 20 C -0.142 4.142 21 C -0.092 4.092 22 H 0.131 0.869 23 C -0.090 4.090 24 C -0.063 4.063 25 C -0.159 4.159 26 C 0.122 3.878 27 F -0.133 7.133 28 C -0.190 4.190 29 C 0.141 3.859 30 F -0.124 7.124 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.004 0.996 37 H 0.027 0.973 38 H 0.032 0.968 39 H 0.271 0.729 40 H 0.410 0.590 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 3.220 16.128 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.088 0.912 4 C -0.004 4.004 5 N -0.322 5.322 6 C -0.021 4.021 7 C -0.472 4.472 8 H 0.069 0.931 9 C -0.229 4.229 10 N -0.540 5.540 11 Si 0.876 3.124 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.207 1.207 15 N -0.331 5.331 16 C 0.324 3.676 17 O -0.443 6.443 18 C -0.188 4.188 19 H 0.145 0.855 20 C -0.179 4.179 21 C -0.110 4.110 22 H 0.149 0.851 23 C -0.091 4.091 24 C -0.081 4.081 25 C -0.178 4.178 26 C 0.103 3.897 27 F -0.112 7.112 28 C -0.210 4.210 29 C 0.121 3.879 30 F -0.102 7.102 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.022 0.978 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.248 0.752 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.779 2.543 16.607 16.818 hybrid contribution 1.073 1.298 -0.589 1.784 sum 0.294 3.841 16.017 16.474 Atomic orbital electron populations 1.22130 0.96594 1.01728 1.01355 1.21708 0.92276 0.97444 0.86801 0.91214 1.21352 0.85395 1.01179 0.92505 1.43783 0.99978 1.21094 1.67313 1.21065 0.94734 0.90728 0.95597 1.19875 1.10393 0.87123 1.29828 0.93062 1.25808 0.99774 0.96531 1.00809 1.70772 1.40754 1.36445 1.05992 0.83795 0.76348 0.76801 0.75471 1.21703 1.21636 1.20741 1.45879 1.64203 1.14849 1.08190 1.19400 0.77694 0.86570 0.83977 1.90624 1.52337 1.15943 1.85414 1.22451 1.04196 1.03156 0.88979 0.85483 1.23117 0.95420 1.00147 0.99242 1.20889 0.95475 0.99400 0.95257 0.85092 1.19296 0.96285 0.93625 0.99874 1.20860 0.97278 0.95455 0.94514 1.21184 0.95135 1.00027 1.01431 1.17286 0.86753 0.93393 0.92288 1.91526 1.56953 1.93634 1.69081 1.21006 1.00878 0.97581 1.01541 1.17081 0.95061 0.80709 0.95053 1.91561 1.95625 1.38963 1.84082 0.92535 0.92987 0.92291 0.93809 0.89398 0.97811 0.95388 0.94960 0.91832 0.75223 0.87489 0.87460 0.83546 0.83846 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.48 37.16 0.35 -2.32 16 2 C 0.13 2.46 2.88 -67.93 -0.20 2.26 16 3 H 0.07 1.48 7.58 -51.93 -0.39 1.08 16 4 C 0.12 2.65 4.47 -4.04 -0.02 2.63 16 5 N -0.60 -14.20 2.54 -181.12 -0.46 -14.67 16 6 C 0.12 2.66 10.70 59.85 0.64 3.30 16 7 C -0.34 -8.76 7.94 -15.06 -0.12 -8.88 16 8 H 0.05 1.37 7.96 -52.49 -0.42 0.96 16 9 C -0.03 -0.66 4.32 -17.43 -0.08 -0.74 16 10 N -0.90 -24.64 12.18 55.49 0.68 -23.97 16 11 Si 1.05 22.53 29.77 -169.99 -5.06 17.47 16 12 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 N -0.68 -13.48 4.49 -53.80 -0.24 -13.72 16 16 C 0.54 10.21 7.58 -10.98 -0.08 10.12 16 17 O -0.56 -12.04 15.92 5.56 0.09 -11.95 16 18 C -0.17 -2.52 5.82 -91.77 -0.53 -3.06 16 19 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 20 C -0.14 -1.64 9.56 -26.72 -0.26 -1.89 16 21 C -0.09 -1.22 5.31 -91.76 -0.49 -1.71 16 22 H 0.13 1.96 7.40 -51.93 -0.38 1.58 16 23 C -0.09 -1.07 5.62 -104.54 -0.59 -1.66 16 24 C -0.06 -0.61 9.29 -39.60 -0.37 -0.98 16 25 C -0.16 -1.45 10.03 -39.50 -0.40 -1.85 16 26 C 0.12 1.26 7.30 -39.43 -0.29 0.97 16 27 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 28 C -0.19 -2.04 10.01 -39.45 -0.39 -2.44 16 29 C 0.14 1.75 7.24 -39.43 -0.29 1.46 16 30 F -0.12 -1.74 16.61 2.25 0.04 -1.71 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.09 2.09 5.31 -51.92 -0.28 1.81 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.27 7.57 7.16 -40.82 -0.29 7.28 16 40 H 0.41 8.48 6.75 -40.82 -0.28 8.20 16 41 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.11 0.93 6.18 -51.93 -0.32 0.61 16 43 H 0.15 1.11 6.02 -52.49 -0.32 0.80 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -29.38 381.13 -8.38 -37.76 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.11 Total: 11.18 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.10 Total: -4.78 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.03 Total: -52.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.06 Total: 17.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.38 -8.38 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268738812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.439 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds