Wall clock time and date at job start Tue Mar 31 2020 21:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.52998 * 109.46846 * 240.00010 * 2 1 3 5 5 N 1.46498 * 109.47071 * 185.00380 * 4 2 1 6 6 C 1.46503 * 119.99824 * 269.99734 * 5 4 2 7 7 C 1.36936 * 120.00258 * 89.99398 * 5 4 2 8 8 H 1.08002 * 120.00417 * 214.43357 * 7 5 4 9 9 C 1.38817 * 119.99957 * 34.44551 * 7 5 4 10 10 N 1.31618 * 119.99999 * 26.93066 * 9 7 5 11 11 Si 1.86801 * 119.99726 * 206.93878 * 9 7 5 12 12 H 1.48502 * 109.47336 * 59.99619 * 11 9 7 13 13 H 1.48498 * 109.47094 * 299.99421 * 11 9 7 14 14 H 1.48498 * 109.46909 * 179.97438 * 11 9 7 15 15 N 1.46503 * 109.47018 * 120.00110 * 2 1 3 16 16 C 1.34778 * 119.99768 * 275.00082 * 15 2 1 17 17 O 1.21280 * 119.99999 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99813 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.55098 * 34.27449 * 18 16 15 20 20 C 1.52998 * 117.49781 * 248.60395 * 18 16 15 21 21 C 1.52998 * 117.49601 * 179.97438 * 18 16 15 22 22 H 1.09005 * 117.50365 * 0.02562 * 21 18 16 23 23 C 1.50703 * 117.49988 * 214.97692 * 21 18 16 24 24 C 1.38231 * 119.98441 * 300.00462 * 23 21 18 25 25 C 1.38190 * 120.04835 * 179.97438 * 24 23 21 26 26 C 1.38501 * 120.02348 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.00958 * 179.97438 * 26 25 24 28 28 C 1.38392 * 119.97803 * 0.02562 * 26 25 24 29 29 C 1.38444 * 119.94589 * 359.76584 * 28 26 25 30 30 F 1.35104 * 120.01346 * 180.22797 * 29 28 26 31 31 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46638 * 299.99981 * 1 2 3 33 33 H 1.08996 * 109.47283 * 59.99589 * 1 2 3 34 34 H 1.08996 * 109.47391 * 64.99946 * 4 2 1 35 35 H 1.09011 * 109.47028 * 304.99691 * 4 2 1 36 36 H 1.08995 * 109.47375 * 265.83097 * 6 5 4 37 37 H 1.08997 * 109.46848 * 25.83434 * 6 5 4 38 38 H 1.09005 * 109.46956 * 145.82451 * 6 5 4 39 39 H 0.97000 * 119.99966 * 5.71073 * 10 9 7 40 40 H 0.96999 * 120.00310 * 94.99523 * 15 2 1 41 41 H 1.09006 * 117.49816 * 0.02562 * 20 18 16 42 42 H 1.08992 * 117.49878 * 144.99702 * 20 18 16 43 43 H 1.07992 * 119.97815 * 359.97438 * 24 23 21 44 44 H 1.08002 * 119.98824 * 179.97438 * 25 24 23 45 45 H 1.07992 * 120.02801 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2339 -1.7613 7 6 4.0849 -1.9159 -0.6022 8 1 5.0125 -1.8042 -0.0604 9 6 3.4857 -3.1641 -0.7024 10 7 2.7117 -3.4420 -1.7300 11 14 3.7778 -4.4492 0.6215 12 1 3.3057 -3.9285 1.9296 13 1 5.2289 -4.7536 0.7043 14 1 3.0305 -5.6871 0.2831 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7286 3.5875 19 1 3.3938 -1.5054 3.4108 20 6 1.6582 -0.9473 4.7318 21 6 2.7743 0.0897 4.8743 22 1 2.4921 1.1417 4.8311 23 6 3.9162 -0.2399 5.8008 24 6 4.0215 -1.5067 6.3440 25 6 5.0683 -1.8106 7.1934 26 6 6.0136 -0.8461 7.5009 27 9 7.0366 -1.1433 8.3318 28 6 5.9092 0.4225 6.9577 29 6 4.8624 0.7244 6.1035 30 9 4.7617 1.9611 5.5687 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.7516 -0.1584 -2.1370 35 1 1.6053 -1.7199 -1.2951 36 1 4.6038 -0.0270 -2.7847 37 1 3.7804 1.1726 -1.7595 38 1 5.2395 0.3451 -1.1642 39 1 2.6256 -2.8068 -2.4581 40 1 2.2490 -1.6318 1.1527 41 1 0.6419 -0.5777 4.5946 42 1 1.7496 -1.8679 5.3080 43 1 3.2852 -2.2594 6.1045 44 1 5.1494 -2.8005 7.6176 45 1 6.6455 1.1752 7.1973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268738812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:29 Heat of formation + Delta-G solvation = -74.915698 kcal Electronic energy + Delta-G solvation = -29673.808966 eV Core-core repulsion = 25327.988988 eV Total energy + Delta-G solvation = -4345.819979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.07509 -50.02615 -41.25836 -40.06541 -38.49355 -37.20033 -35.58288 -33.26495 -32.13563 -31.84074 -31.15250 -27.94272 -27.29335 -25.77703 -25.11155 -23.88558 -23.46477 -22.00737 -21.47247 -20.94958 -19.40772 -19.33096 -18.61076 -17.98060 -17.31249 -17.01002 -16.89396 -16.65053 -16.35860 -16.10341 -15.89809 -15.84317 -15.49591 -15.35091 -15.28138 -15.06071 -14.84632 -14.20377 -14.04339 -13.63500 -13.48856 -13.36485 -13.22388 -13.14366 -12.99625 -12.76237 -12.60526 -12.52993 -12.41363 -12.28935 -11.88493 -11.86036 -11.70345 -11.55742 -11.40852 -10.80917 -10.44686 -10.10017 -9.88897 -9.54756 -8.86520 -8.16531 -5.47264 -0.17324 -0.03178 1.56575 1.61410 1.65807 1.86613 2.19323 2.39537 2.66979 2.79925 2.91818 3.17511 3.35734 3.38248 3.54418 3.58908 3.71086 3.82367 3.90341 4.01318 4.08735 4.16730 4.26131 4.39028 4.46645 4.59509 4.63010 4.63967 4.76640 4.79401 4.81951 4.85946 4.89338 4.92116 4.94372 4.99873 5.03719 5.06961 5.17271 5.27936 5.40304 5.70295 5.71874 5.91764 6.39285 6.75481 7.07582 7.36939 7.75869 8.21605 8.98041 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.003582 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.976817 B = 7814.121790 C = 8745.153069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.051 0.949 4 C 0.129 3.871 5 N -0.614 5.614 6 C 0.125 3.875 7 C -0.347 4.347 8 H 0.035 0.965 9 C -0.059 4.059 10 N -0.922 5.922 11 Si 1.084 2.916 12 H -0.250 1.250 13 H -0.286 1.286 14 H -0.292 1.292 15 N -0.687 5.687 16 C 0.533 3.467 17 O -0.595 6.595 18 C -0.190 4.190 19 H 0.132 0.868 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.105 0.895 23 C -0.100 4.100 24 C -0.056 4.056 25 C -0.146 4.146 26 C 0.116 3.884 27 F -0.135 7.135 28 C -0.192 4.192 29 C 0.113 3.887 30 F -0.143 7.143 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.003 0.997 37 H 0.045 0.955 38 H 0.027 0.973 39 H 0.255 0.745 40 H 0.407 0.593 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 1.488 18.349 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.070 0.930 4 C 0.002 3.998 5 N -0.338 5.338 6 C -0.020 4.020 7 C -0.477 4.477 8 H 0.053 0.947 9 C -0.258 4.258 10 N -0.562 5.562 11 Si 0.908 3.092 12 H -0.174 1.174 13 H -0.213 1.213 14 H -0.218 1.218 15 N -0.335 5.335 16 C 0.321 3.679 17 O -0.478 6.478 18 C -0.210 4.210 19 H 0.150 0.850 20 C -0.147 4.147 21 C -0.110 4.110 22 H 0.123 0.877 23 C -0.101 4.101 24 C -0.074 4.074 25 C -0.165 4.165 26 C 0.097 3.903 27 F -0.114 7.114 28 C -0.212 4.212 29 C 0.094 3.906 30 F -0.122 7.122 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.243 0.757 41 H 0.126 0.874 42 H 0.165 0.835 43 H 0.193 0.807 44 H 0.192 0.808 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.221 0.845 18.837 18.896 hybrid contribution 1.275 1.898 -1.315 2.637 sum 0.053 2.743 17.523 17.736 Atomic orbital electron populations 1.22021 0.94231 1.02176 1.02248 1.21544 0.94053 0.95942 0.86252 0.93047 1.21308 0.84176 1.00403 0.93867 1.44006 1.01058 1.21154 1.67555 1.21083 0.94651 0.91088 0.95221 1.19883 1.10190 0.87964 1.29631 0.94705 1.26993 0.98995 0.98188 1.01584 1.70907 1.42412 1.36364 1.06548 0.83342 0.76360 0.74354 0.75151 1.17400 1.21260 1.21751 1.45932 1.64468 1.14589 1.08544 1.20051 0.76822 0.86310 0.84762 1.90601 1.53795 1.17389 1.86000 1.22393 1.06464 1.04059 0.88133 0.84969 1.23346 0.94489 1.00791 0.96036 1.20754 0.97150 0.98575 0.94477 0.87669 1.19332 0.95815 0.94677 1.00261 1.21156 0.97832 0.94757 0.93654 1.21528 0.93866 1.00872 1.00227 1.17446 0.87096 0.93507 0.92300 1.91526 1.57136 1.93589 1.69128 1.21110 1.00590 0.98363 1.01112 1.17382 0.96364 0.80458 0.96403 1.91507 1.95851 1.40219 1.84606 0.92223 0.93051 0.90426 0.92861 0.91260 0.97927 0.93577 0.95422 0.93457 0.75656 0.87376 0.83452 0.80667 0.80827 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.48 71.98 0.68 -4.15 16 2 C 0.13 5.08 2.88 44.99 0.13 5.21 16 3 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 4 C 0.13 5.58 4.47 86.38 0.39 5.97 16 5 N -0.61 -29.38 2.54 -726.93 -1.85 -31.22 16 6 C 0.12 5.38 10.70 127.77 1.37 6.75 16 7 C -0.35 -17.81 7.94 84.03 0.67 -17.14 16 8 H 0.04 1.89 7.96 -2.91 -0.02 1.86 16 9 C -0.06 -2.99 4.32 84.86 0.37 -2.63 16 10 N -0.92 -50.69 12.18 21.65 0.26 -50.42 16 11 Si 1.08 43.92 29.77 68.60 2.04 45.96 16 12 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 13 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 15 N -0.69 -26.91 4.49 -442.52 -1.99 -28.90 16 16 C 0.53 20.09 7.58 87.66 0.66 20.75 16 17 O -0.60 -25.88 15.92 -3.03 -0.05 -25.92 16 18 C -0.19 -5.43 5.82 -11.54 -0.07 -5.50 16 19 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 20 C -0.11 -2.18 9.56 30.60 0.29 -1.89 16 21 C -0.09 -2.31 5.31 -11.53 -0.06 -2.37 16 22 H 0.11 3.23 7.40 -2.38 -0.02 3.21 16 23 C -0.10 -2.21 5.62 -19.81 -0.11 -2.32 16 24 C -0.06 -0.87 9.29 22.26 0.21 -0.67 16 25 C -0.15 -2.11 10.03 22.32 0.22 -1.88 16 26 C 0.12 2.12 7.30 22.37 0.16 2.28 16 27 F -0.14 -2.56 17.27 44.97 0.78 -1.79 16 28 C -0.19 -3.94 10.01 22.36 0.22 -3.72 16 29 C 0.11 2.77 7.24 22.37 0.16 2.94 16 30 F -0.14 -4.19 16.61 44.97 0.75 -3.45 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.14 8.07 -2.39 -0.02 2.13 16 35 H 0.07 3.32 5.31 -2.38 -0.01 3.30 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 38 H 0.03 1.19 8.07 -2.38 -0.02 1.17 16 39 H 0.26 14.53 7.16 -92.71 -0.66 13.87 16 40 H 0.41 16.48 6.75 -92.71 -0.63 15.85 16 41 H 0.11 2.16 8.14 -2.38 -0.02 2.15 16 42 H 0.15 1.72 6.18 -2.39 -0.01 1.71 16 43 H 0.18 1.64 6.02 -2.91 -0.02 1.63 16 44 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -65.36 381.13 5.75 -59.61 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.51 Total: 34.50 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.30 Total: 1.64 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.57 Total: -110.54 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.52 Total: -5.24 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.04 Total: 45.96 kcal Total: -65.36 5.75 -59.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268738812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.304 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds