Wall clock time and date at job start Tue Mar 31 2020 21:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47204 * 2 1 4 4 C 1.52995 * 109.47039 * 119.99820 * 2 1 3 5 5 N 1.46504 * 109.47217 * 174.99822 * 4 2 1 6 6 C 1.46504 * 120.00014 * 270.00178 * 5 4 2 7 7 C 1.36936 * 119.99842 * 90.00084 * 5 4 2 8 8 H 1.08000 * 119.99817 * 213.05370 * 7 5 4 9 9 C 1.38806 * 120.00084 * 33.05430 * 7 5 4 10 10 N 1.31623 * 120.00365 * 29.35675 * 9 7 5 11 11 Si 1.86806 * 119.99875 * 209.36314 * 9 7 5 12 12 H 1.48493 * 109.47421 * 89.99790 * 11 9 7 13 13 H 1.48501 * 109.46978 * 329.99524 * 11 9 7 14 14 H 1.48502 * 109.46834 * 210.00115 * 11 9 7 15 15 N 1.46503 * 109.46951 * 239.99934 * 2 1 3 16 16 C 1.34775 * 119.99817 * 84.99774 * 15 2 1 17 17 O 1.21281 * 120.00504 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99536 * 179.97438 * 16 15 2 19 19 H 1.08998 * 115.55503 * 34.28382 * 18 16 15 20 20 C 1.53004 * 117.49944 * 248.61136 * 18 16 15 21 21 C 1.53007 * 117.49588 * 179.97438 * 18 16 15 22 22 H 1.08994 * 117.49824 * 0.02562 * 21 18 16 23 23 C 1.50704 * 117.49702 * 214.97876 * 21 18 16 24 24 C 1.38227 * 119.99084 * 300.00199 * 23 21 18 25 25 C 1.38177 * 120.05204 * 180.02562 * 24 23 21 26 26 C 1.38499 * 120.02593 * 359.97438 * 25 24 23 27 27 F 1.35102 * 120.01162 * 179.97438 * 26 25 24 28 28 C 1.38397 * 119.97502 * 0.02562 * 26 25 24 29 29 C 1.38444 * 119.94537 * 359.76258 * 28 26 25 30 30 F 1.35101 * 120.01158 * 180.22983 * 29 28 26 31 31 H 1.09002 * 109.46751 * 300.00633 * 1 2 3 32 32 H 1.09000 * 109.46918 * 59.99960 * 1 2 3 33 33 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47290 * 54.99922 * 4 2 1 35 35 H 1.09003 * 109.47473 * 294.99915 * 4 2 1 36 36 H 1.08998 * 109.46832 * 266.66003 * 6 5 4 37 37 H 1.09006 * 109.46681 * 26.65756 * 6 5 4 38 38 H 1.09000 * 109.47069 * 146.65227 * 6 5 4 39 39 H 0.96999 * 119.99306 * 6.57600 * 10 9 7 40 40 H 0.97000 * 119.99877 * 264.99945 * 15 2 1 41 41 H 1.09003 * 117.49784 * 0.02562 * 20 18 16 42 42 H 1.08995 * 117.49870 * 145.00167 * 20 18 16 43 43 H 1.08003 * 119.97182 * 359.97438 * 24 23 21 44 44 H 1.08006 * 119.98803 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.02679 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1259 -1.9920 0.5612 7 6 4.2799 0.1648 1.7240 8 1 5.2312 0.4052 1.2728 9 6 3.8477 0.8606 2.8446 10 7 3.0620 0.2727 3.7218 11 14 4.3811 2.6315 3.1077 12 1 3.3994 3.5443 2.4689 13 1 5.7198 2.8406 2.5001 14 1 4.4482 2.9171 4.5635 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3572 17 8 1.8590 1.1586 -2.4116 18 6 2.6498 -0.7286 -3.5874 19 1 2.3535 -1.7734 -3.6813 20 6 4.0315 -0.3362 -4.1147 21 6 2.7731 0.0893 -4.8746 22 1 2.4910 1.1412 -4.8314 23 6 2.4757 -0.6112 -6.1754 24 6 3.2197 -1.7134 -6.5525 25 6 2.9484 -2.3563 -7.7451 26 6 1.9300 -1.8972 -8.5638 27 9 1.6653 -2.5258 -9.7301 28 6 1.1843 -0.7938 -8.1873 29 6 1.4542 -0.1531 -6.9901 30 9 0.7241 0.9213 -6.6190 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.6054 -1.7197 1.2952 35 1 1.7517 -0.1582 2.1370 36 1 4.3363 -2.7454 1.3202 37 1 3.4500 -2.4080 -0.1861 38 1 5.0566 -1.6898 0.0811 39 1 2.8621 -0.6726 3.6368 40 1 2.2490 -1.6318 -1.1526 41 1 4.5770 0.4355 -3.5714 42 1 4.6441 -1.1227 -4.5554 43 1 4.0144 -2.0718 -5.9148 44 1 3.5307 -3.2171 -8.0389 45 1 0.3903 -0.4349 -8.8253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268738827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:33 Heat of formation + Delta-G solvation = -73.125444 kcal Electronic energy + Delta-G solvation = -29095.366052 eV Core-core repulsion = 24749.623704 eV Total energy + Delta-G solvation = -4345.742347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.07443 -50.02204 -41.31957 -40.09778 -38.50787 -37.23108 -35.75397 -33.11894 -32.32105 -31.85696 -31.17031 -27.88764 -27.34886 -25.84933 -25.12917 -23.89395 -23.40249 -22.01921 -21.66774 -21.03219 -19.38545 -19.37191 -18.67414 -18.00103 -17.25505 -17.00708 -16.95477 -16.65915 -16.36052 -16.24355 -16.00297 -15.80456 -15.53823 -15.45613 -15.36424 -14.98483 -14.82204 -14.22963 -14.00867 -13.63498 -13.55540 -13.40141 -13.23302 -13.20412 -12.89086 -12.71962 -12.61344 -12.52623 -12.42929 -12.40701 -11.95944 -11.89912 -11.71465 -11.57895 -11.48986 -10.86454 -10.45952 -10.09958 -10.02060 -9.55307 -8.87775 -8.19668 -5.47617 -0.17414 -0.02952 1.53395 1.55309 1.60505 1.77887 2.11222 2.33951 2.61466 2.80485 2.90930 3.12827 3.33037 3.36162 3.53516 3.58869 3.68550 3.80023 3.90622 3.96904 4.08593 4.14488 4.19499 4.30498 4.44954 4.59739 4.62925 4.68192 4.77292 4.80516 4.82387 4.88298 4.92586 4.95415 5.00963 5.02600 5.06973 5.10389 5.20013 5.27342 5.30238 5.64617 5.71835 5.88977 6.39142 6.64802 7.07754 7.33695 7.75030 8.16582 8.94321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002456 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.069386 B =11398.723232 C =11587.656620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.134 3.866 3 H 0.037 0.963 4 C 0.135 3.865 5 N -0.612 5.612 6 C 0.127 3.873 7 C -0.352 4.352 8 H 0.037 0.963 9 C -0.064 4.064 10 N -0.923 5.923 11 Si 1.096 2.904 12 H -0.292 1.292 13 H -0.277 1.277 14 H -0.289 1.289 15 N -0.691 5.691 16 C 0.530 3.470 17 O -0.595 6.595 18 C -0.172 4.172 19 H 0.159 0.841 20 C -0.119 4.119 21 C -0.095 4.095 22 H 0.097 0.903 23 C -0.096 4.096 24 C -0.053 4.053 25 C -0.145 4.145 26 C 0.116 3.884 27 F -0.136 7.136 28 C -0.192 4.192 29 C 0.113 3.887 30 F -0.144 7.144 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.001 0.999 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.258 0.742 40 H 0.407 0.593 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -10.174 -24.196 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.056 0.944 4 C 0.008 3.992 5 N -0.335 5.335 6 C -0.017 4.017 7 C -0.482 4.482 8 H 0.055 0.945 9 C -0.262 4.262 10 N -0.564 5.564 11 Si 0.923 3.077 12 H -0.220 1.220 13 H -0.202 1.202 14 H -0.215 1.215 15 N -0.342 5.342 16 C 0.318 3.682 17 O -0.476 6.476 18 C -0.193 4.193 19 H 0.176 0.824 20 C -0.156 4.156 21 C -0.114 4.114 22 H 0.115 0.885 23 C -0.097 4.097 24 C -0.070 4.070 25 C -0.164 4.164 26 C 0.097 3.903 27 F -0.115 7.115 28 C -0.212 4.212 29 C 0.094 3.906 30 F -0.123 7.123 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.019 0.981 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.245 0.755 41 H 0.107 0.893 42 H 0.170 0.830 43 H 0.195 0.805 44 H 0.192 0.808 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.401 -8.047 -23.263 24.655 hybrid contribution -0.207 -0.992 -0.709 1.237 sum -1.608 -9.040 -23.972 25.670 Atomic orbital electron populations 1.22008 0.94390 1.02745 1.01510 1.21386 0.93658 0.96380 0.85937 0.94443 1.21213 0.83794 0.98377 0.95855 1.43965 1.01131 1.20856 1.67558 1.21195 0.96984 0.88260 0.95274 1.19956 1.04718 1.14563 1.08973 0.94525 1.26778 1.00101 1.08220 0.91128 1.70868 1.40279 1.12428 1.32777 0.83088 0.76096 0.72894 0.75647 1.21951 1.20236 1.21489 1.45875 1.65681 1.14119 1.08545 1.20282 0.76690 0.86384 0.84884 1.90663 1.52772 1.18307 1.85862 1.22413 1.04345 1.01456 0.91044 0.82398 1.23290 0.88609 1.03889 0.99769 1.20729 1.03997 0.98654 0.87980 0.88515 1.19259 0.96817 0.98443 0.95210 1.21131 0.98265 0.91823 0.95803 1.21524 0.97708 1.02786 0.94343 1.17471 0.97004 0.92519 0.83352 1.91531 1.93350 1.80979 1.45612 1.21110 1.04355 0.98139 0.97588 1.17399 0.92418 0.86276 0.94533 1.91514 1.76060 1.53239 1.91493 0.91936 0.93575 0.90477 0.92304 0.92113 0.98127 0.91826 0.94834 0.93216 0.75534 0.89266 0.82965 0.80486 0.80832 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.48 71.98 0.68 -4.24 16 2 C 0.13 5.27 2.88 44.99 0.13 5.40 16 3 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 4 C 0.13 5.76 4.51 86.38 0.39 6.15 16 5 N -0.61 -28.55 2.52 -726.92 -1.83 -30.39 16 6 C 0.13 4.70 10.27 127.77 1.31 6.01 16 7 C -0.35 -19.31 9.40 84.03 0.79 -18.52 16 8 H 0.04 2.09 7.98 -2.91 -0.02 2.07 16 9 C -0.06 -3.57 4.78 84.86 0.41 -3.16 16 10 N -0.92 -54.25 12.13 21.65 0.26 -53.99 16 11 Si 1.10 52.09 30.01 68.60 2.06 54.15 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 N -0.69 -22.29 4.52 -442.53 -2.00 -24.29 16 16 C 0.53 17.72 7.58 87.66 0.66 18.39 16 17 O -0.59 -25.86 15.92 -3.03 -0.05 -25.91 16 18 C -0.17 -3.78 5.82 -11.54 -0.07 -3.85 16 19 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 20 C -0.12 -2.15 9.56 30.61 0.29 -1.85 16 21 C -0.09 -2.10 5.31 -11.52 -0.06 -2.16 16 22 H 0.10 2.86 7.40 -2.39 -0.02 2.84 16 23 C -0.10 -1.70 5.62 -19.82 -0.11 -1.81 16 24 C -0.05 -0.55 9.29 22.25 0.21 -0.35 16 25 C -0.15 -1.42 10.02 22.32 0.22 -1.20 16 26 C 0.12 1.65 7.30 22.37 0.16 1.81 16 27 F -0.14 -2.10 17.27 44.97 0.78 -1.33 16 28 C -0.19 -3.20 10.01 22.36 0.22 -2.98 16 29 C 0.11 2.32 7.24 22.37 0.16 2.48 16 30 F -0.14 -3.76 16.61 44.97 0.75 -3.01 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 35 H 0.06 3.09 5.34 -2.39 -0.01 3.08 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.06 1.78 5.71 -2.38 -0.01 1.77 16 38 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 39 H 0.26 15.23 7.36 -92.71 -0.68 14.55 16 40 H 0.41 10.61 6.18 -92.71 -0.57 10.03 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.15 1.36 6.18 -2.39 -0.01 1.34 16 43 H 0.18 0.73 6.02 -2.91 -0.02 0.71 16 44 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 45 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -73.69 380.21 5.91 -67.77 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.55 Total: 16.86 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.41 Total: 0.13 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -3.57 Total: -108.67 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 1.52 Total: -4.34 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.06 Total: 54.15 kcal Total: -73.69 5.91 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268738827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.355 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds