Wall clock time and date at job start Tue Mar 31 2020 21:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47349 * 2 1 4 4 C 1.52995 * 109.47407 * 239.99124 * 2 1 3 5 5 N 1.46495 * 109.47268 * 185.00337 * 4 2 1 6 6 C 1.46505 * 119.99932 * 269.72774 * 5 4 2 7 7 C 1.36938 * 120.00127 * 90.00130 * 5 4 2 8 8 H 1.08004 * 119.99622 * 28.72937 * 7 5 4 9 9 C 1.38813 * 120.00282 * 208.72131 * 7 5 4 10 10 N 1.31621 * 119.99578 * 9.29636 * 9 7 5 11 11 Si 1.86796 * 120.00093 * 189.28955 * 9 7 5 12 12 H 1.48498 * 109.47130 * 60.00833 * 11 9 7 13 13 H 1.48499 * 109.46856 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47448 * 300.00208 * 11 9 7 15 15 N 1.46501 * 109.46516 * 119.99362 * 2 1 3 16 16 C 1.34778 * 120.00156 * 274.99906 * 15 2 1 17 17 O 1.21277 * 119.99793 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99896 * 180.02562 * 16 15 2 19 19 H 1.09007 * 115.54626 * 34.42298 * 18 16 15 20 20 C 1.52996 * 117.49857 * 248.74709 * 18 16 15 21 21 C 1.52995 * 117.49605 * 180.08494 * 18 16 15 22 22 H 1.08997 * 117.50101 * 0.02562 * 21 18 16 23 23 C 1.50705 * 117.50007 * 214.98152 * 21 18 16 24 24 C 1.38423 * 120.02379 * 309.01149 * 23 21 18 25 25 F 1.35107 * 120.00947 * 359.97438 * 24 23 21 26 26 C 1.38469 * 119.97608 * 179.74285 * 24 23 21 27 27 C 1.38216 * 120.02153 * 0.51122 * 26 24 23 28 28 C 1.38209 * 120.04990 * 359.76335 * 27 26 24 29 29 C 1.38419 * 120.02767 * 129.28475 * 23 21 18 30 30 F 1.35097 * 120.01062 * 359.97438 * 29 23 21 31 31 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47372 * 300.00880 * 1 2 3 33 33 H 1.08999 * 109.46465 * 60.00466 * 1 2 3 34 34 H 1.09001 * 109.46909 * 65.00628 * 4 2 1 35 35 H 1.09003 * 109.47229 * 305.00449 * 4 2 1 36 36 H 1.08997 * 109.46824 * 95.92877 * 6 5 4 37 37 H 1.09005 * 109.47190 * 215.92497 * 6 5 4 38 38 H 1.09000 * 109.47122 * 335.92327 * 6 5 4 39 39 H 0.96997 * 119.99719 * 179.97438 * 10 9 7 40 40 H 0.97006 * 119.99875 * 95.00780 * 15 2 1 41 41 H 1.08997 * 117.49654 * 0.02562 * 20 18 16 42 42 H 1.08997 * 117.49383 * 145.00203 * 20 18 16 43 43 H 1.07991 * 119.98968 * 180.22943 * 26 24 23 44 44 H 1.07997 * 119.97005 * 179.74769 * 27 26 24 45 45 H 1.07998 * 119.98537 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8266 -1.1903 6 6 4.3344 0.2309 -1.7664 7 6 4.0849 -1.9160 -0.6019 8 1 3.5745 -2.8678 -0.6001 9 6 5.3339 -1.7971 -0.0079 10 7 5.8754 -0.6083 0.1534 11 14 6.2460 -3.3242 0.5626 12 1 6.4843 -4.2206 -0.5971 13 1 7.5474 -2.9295 1.1592 14 1 5.4314 -4.0364 1.5797 15 7 2.0182 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8581 1.1586 2.4116 18 6 2.6496 -0.7283 3.5877 19 1 3.3954 -1.5035 3.4112 20 6 1.6570 -0.9498 4.7306 21 6 2.7716 0.0895 4.8750 22 1 2.4879 1.1410 4.8321 23 6 3.9132 -0.2389 5.8025 24 6 4.1297 -1.5476 6.1980 25 9 3.3172 -2.5312 5.7532 26 6 5.1821 -1.8490 7.0460 27 6 6.0098 -0.8421 7.5058 28 6 5.7912 0.4657 7.1160 29 6 4.7426 0.7686 6.2639 30 9 4.5294 2.0470 5.8826 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.7518 -0.1585 -2.1369 35 1 1.6054 -1.7200 -1.2949 36 1 4.6277 0.9296 -0.9829 37 1 5.2259 -0.2114 -2.2112 38 1 3.7705 0.7612 -2.5338 39 1 6.7480 -0.5252 0.5688 40 1 2.2490 -1.6317 1.1528 41 1 0.6402 -0.5822 4.5925 42 1 1.7497 -1.8707 5.3062 43 1 5.3534 -2.8704 7.3518 44 1 6.8279 -1.0776 8.1703 45 1 6.4383 1.2517 7.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268746207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:38 Heat of formation + Delta-G solvation = -47.675819 kcal Electronic energy + Delta-G solvation = -30324.724852 eV Core-core repulsion = 25980.086083 eV Total energy + Delta-G solvation = -4344.638769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.29458 -48.95647 -39.63563 -38.78064 -36.83134 -35.69523 -33.84428 -31.38313 -30.86012 -30.41722 -29.91904 -26.15425 -25.57866 -24.63989 -23.60984 -22.88548 -21.73730 -21.14505 -19.90305 -19.42116 -18.20840 -17.68447 -16.80921 -16.44180 -16.21152 -15.86269 -15.65954 -15.40203 -15.33007 -14.82852 -14.75877 -14.26301 -14.01211 -13.79574 -13.61606 -13.16848 -13.00584 -12.80398 -12.56933 -12.30505 -12.24090 -12.05968 -11.94249 -11.76545 -11.36453 -11.30433 -10.99701 -10.85532 -10.73511 -10.63657 -10.38385 -10.33889 -10.18405 -10.06232 -9.84043 -9.14909 -8.87680 -8.68554 -8.58237 -8.16238 -6.68534 -5.73288 -3.26625 0.81273 0.84908 3.04405 3.30137 3.31872 3.39151 3.39925 3.78201 3.85435 4.16343 4.29357 4.42104 4.45389 4.57173 4.63443 4.96377 5.02548 5.14162 5.31664 5.35357 5.51512 5.60722 5.64200 5.70546 5.72998 5.81072 5.88327 5.89885 5.96648 5.99435 6.03885 6.18870 6.21940 6.30040 6.33871 6.49282 6.57649 6.63222 6.76249 6.94373 7.32437 7.39547 7.74342 7.78776 8.39533 8.42524 9.05500 9.20803 9.83702 10.37344 11.29085 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.004538 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.217281 B = 6168.819881 C = 7355.902822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.596 5.596 6 C 0.160 3.840 7 C -0.262 4.262 8 H 0.063 0.937 9 C 0.014 3.986 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.679 5.679 16 C 0.549 3.451 17 O -0.563 6.563 18 C -0.157 4.157 19 H 0.124 0.876 20 C -0.162 4.162 21 C -0.095 4.095 22 H 0.132 0.868 23 C -0.113 4.113 24 C 0.128 3.872 25 F -0.122 7.122 26 C -0.162 4.162 27 C -0.070 4.070 28 C -0.162 4.162 29 C 0.138 3.862 30 F -0.124 7.124 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.035 0.965 38 H -0.002 1.002 39 H 0.253 0.747 40 H 0.405 0.595 41 H 0.100 0.900 42 H 0.128 0.872 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 -1.890 13.380 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.318 5.318 6 C 0.015 3.985 7 C -0.392 4.392 8 H 0.080 0.920 9 C -0.187 4.187 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.327 5.327 16 C 0.335 3.665 17 O -0.443 6.443 18 C -0.179 4.179 19 H 0.142 0.858 20 C -0.199 4.199 21 C -0.114 4.114 22 H 0.150 0.850 23 C -0.114 4.114 24 C 0.109 3.891 25 F -0.100 7.100 26 C -0.181 4.181 27 C -0.088 4.088 28 C -0.181 4.181 29 C 0.119 3.881 30 F -0.103 7.103 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.241 0.759 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.341 -0.994 13.381 14.103 hybrid contribution 0.804 -1.124 0.123 1.387 sum -3.538 -2.118 13.504 14.119 Atomic orbital electron populations 1.22158 0.97039 1.01185 1.01431 1.21795 0.91642 0.98357 0.87041 0.90658 1.21200 0.86114 0.97782 0.93512 1.43786 0.98820 1.22794 1.66407 1.20815 0.92684 0.90837 0.94146 1.18966 1.01623 0.87921 1.30699 0.91954 1.25141 0.99322 0.95856 0.98338 1.70017 1.17114 1.20702 1.45679 0.86538 0.79482 0.83004 0.78739 1.21016 1.21662 1.20750 1.45575 1.64664 1.14297 1.08184 1.19238 0.77066 0.86371 0.83863 1.90608 1.52264 1.15951 1.85481 1.22305 1.03889 1.02879 0.88783 0.85785 1.23684 0.94812 1.01425 0.99998 1.20809 0.95356 0.99602 0.95619 0.84989 1.19246 0.99053 0.91744 1.01406 1.17201 0.91008 0.83991 0.96942 1.91354 1.70273 1.60723 1.87657 1.21186 0.95544 1.01462 0.99871 1.20807 0.98444 0.91108 0.98433 1.21203 0.98314 0.98510 1.00029 1.17148 0.95525 0.78812 0.96646 1.91550 1.94170 1.35017 1.89534 0.93031 0.93042 0.92362 0.93127 0.93418 0.94780 0.94664 0.98337 0.93697 0.75945 0.88143 0.85421 0.83984 0.83970 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 37.16 0.35 -2.15 16 2 C 0.12 2.32 2.88 -67.93 -0.20 2.13 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 4 C 0.14 2.80 5.36 -4.05 -0.02 2.78 16 5 N -0.60 -14.35 2.80 -181.12 -0.51 -14.86 16 6 C 0.16 3.94 9.05 59.85 0.54 4.48 16 7 C -0.26 -6.71 7.95 -15.06 -0.12 -6.83 16 8 H 0.06 1.55 7.85 -52.48 -0.41 1.14 16 9 C 0.01 0.37 5.18 -17.43 -0.09 0.28 16 10 N -0.89 -25.43 10.88 55.49 0.60 -24.82 16 11 Si 0.89 21.01 29.56 -169.99 -5.03 15.99 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 N -0.68 -13.72 4.49 -53.81 -0.24 -13.96 16 16 C 0.55 11.53 7.58 -10.98 -0.08 11.45 16 17 O -0.56 -13.35 15.92 5.56 0.09 -13.26 16 18 C -0.16 -2.84 5.45 -91.77 -0.50 -3.35 16 19 H 0.12 2.35 7.88 -51.92 -0.41 1.94 16 20 C -0.16 -2.36 9.37 -26.69 -0.25 -2.61 16 21 C -0.10 -1.58 5.39 -91.73 -0.49 -2.07 16 22 H 0.13 2.37 7.22 -51.93 -0.38 1.99 16 23 C -0.11 -1.69 5.65 -104.48 -0.59 -2.28 16 24 C 0.13 1.71 7.05 -39.43 -0.28 1.44 16 25 F -0.12 -1.66 12.91 2.25 0.03 -1.63 16 26 C -0.16 -1.72 10.03 -39.50 -0.40 -2.12 16 27 C -0.07 -0.65 10.04 -39.60 -0.40 -1.05 16 28 C -0.16 -1.77 10.02 -39.51 -0.40 -2.16 16 29 C 0.14 1.97 7.25 -39.43 -0.29 1.68 16 30 F -0.12 -1.97 16.51 2.25 0.04 -1.93 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 35 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.03 0.94 7.19 -51.93 -0.37 0.56 16 37 H 0.03 0.91 7.67 -51.93 -0.40 0.52 16 38 H 0.00 -0.04 7.82 -51.93 -0.41 -0.45 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.40 8.10 7.40 -40.82 -0.30 7.79 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.13 1.66 5.13 -51.93 -0.27 1.40 16 43 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -31.29 378.81 -8.77 -40.06 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.26 Total: 9.11 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.21 Total: -0.39 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.14 Total: -53.64 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.07 Total: -3.56 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.29 -8.77 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268746207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.617 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds