Wall clock time and date at job start Tue Mar 31 2020 21:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47349 * 2 1 4 4 C 1.52995 * 109.47407 * 239.99124 * 2 1 3 5 5 N 1.46495 * 109.47268 * 185.00337 * 4 2 1 6 6 C 1.46505 * 119.99932 * 269.72774 * 5 4 2 7 7 C 1.36938 * 120.00127 * 90.00130 * 5 4 2 8 8 H 1.08004 * 119.99622 * 28.72937 * 7 5 4 9 9 C 1.38813 * 120.00282 * 208.72131 * 7 5 4 10 10 N 1.31621 * 119.99578 * 9.29636 * 9 7 5 11 11 Si 1.86796 * 120.00093 * 189.28955 * 9 7 5 12 12 H 1.48498 * 109.47130 * 60.00833 * 11 9 7 13 13 H 1.48499 * 109.46856 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47448 * 300.00208 * 11 9 7 15 15 N 1.46501 * 109.46516 * 119.99362 * 2 1 3 16 16 C 1.34778 * 120.00156 * 274.99906 * 15 2 1 17 17 O 1.21277 * 119.99793 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99896 * 180.02562 * 16 15 2 19 19 H 1.09007 * 115.54626 * 34.42298 * 18 16 15 20 20 C 1.52996 * 117.49857 * 248.74709 * 18 16 15 21 21 C 1.52995 * 117.49605 * 180.08494 * 18 16 15 22 22 H 1.08997 * 117.50101 * 0.02562 * 21 18 16 23 23 C 1.50705 * 117.50007 * 214.98152 * 21 18 16 24 24 C 1.38423 * 120.02379 * 309.01149 * 23 21 18 25 25 F 1.35107 * 120.00947 * 359.97438 * 24 23 21 26 26 C 1.38469 * 119.97608 * 179.74285 * 24 23 21 27 27 C 1.38216 * 120.02153 * 0.51122 * 26 24 23 28 28 C 1.38209 * 120.04990 * 359.76335 * 27 26 24 29 29 C 1.38419 * 120.02767 * 129.28475 * 23 21 18 30 30 F 1.35097 * 120.01062 * 359.97438 * 29 23 21 31 31 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47372 * 300.00880 * 1 2 3 33 33 H 1.08999 * 109.46465 * 60.00466 * 1 2 3 34 34 H 1.09001 * 109.46909 * 65.00628 * 4 2 1 35 35 H 1.09003 * 109.47229 * 305.00449 * 4 2 1 36 36 H 1.08997 * 109.46824 * 95.92877 * 6 5 4 37 37 H 1.09005 * 109.47190 * 215.92497 * 6 5 4 38 38 H 1.09000 * 109.47122 * 335.92327 * 6 5 4 39 39 H 0.96997 * 119.99719 * 179.97438 * 10 9 7 40 40 H 0.97006 * 119.99875 * 95.00780 * 15 2 1 41 41 H 1.08997 * 117.49654 * 0.02562 * 20 18 16 42 42 H 1.08997 * 117.49383 * 145.00203 * 20 18 16 43 43 H 1.07991 * 119.98968 * 180.22943 * 26 24 23 44 44 H 1.07997 * 119.97005 * 179.74769 * 27 26 24 45 45 H 1.07998 * 119.98537 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8266 -1.1903 6 6 4.3344 0.2309 -1.7664 7 6 4.0849 -1.9160 -0.6019 8 1 3.5745 -2.8678 -0.6001 9 6 5.3339 -1.7971 -0.0079 10 7 5.8754 -0.6083 0.1534 11 14 6.2460 -3.3242 0.5626 12 1 6.4843 -4.2206 -0.5971 13 1 7.5474 -2.9295 1.1592 14 1 5.4314 -4.0364 1.5797 15 7 2.0182 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8581 1.1586 2.4116 18 6 2.6496 -0.7283 3.5877 19 1 3.3954 -1.5035 3.4112 20 6 1.6570 -0.9498 4.7306 21 6 2.7716 0.0895 4.8750 22 1 2.4879 1.1410 4.8321 23 6 3.9132 -0.2389 5.8025 24 6 4.1297 -1.5476 6.1980 25 9 3.3172 -2.5312 5.7532 26 6 5.1821 -1.8490 7.0460 27 6 6.0098 -0.8421 7.5058 28 6 5.7912 0.4657 7.1160 29 6 4.7426 0.7686 6.2639 30 9 4.5294 2.0470 5.8826 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.7518 -0.1585 -2.1369 35 1 1.6054 -1.7200 -1.2949 36 1 4.6277 0.9296 -0.9829 37 1 5.2259 -0.2114 -2.2112 38 1 3.7705 0.7612 -2.5338 39 1 6.7480 -0.5252 0.5688 40 1 2.2490 -1.6317 1.1528 41 1 0.6402 -0.5822 4.5925 42 1 1.7497 -1.8707 5.3062 43 1 5.3534 -2.8704 7.3518 44 1 6.8279 -1.0776 8.1703 45 1 6.4383 1.2517 7.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268746207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:37 Heat of formation + Delta-G solvation = -65.074430 kcal Electronic energy + Delta-G solvation = -30325.479313 eV Core-core repulsion = 25980.086083 eV Total energy + Delta-G solvation = -4345.393229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.29735 -50.07851 -41.10283 -39.89110 -38.34304 -37.26567 -35.64253 -33.21886 -32.05885 -31.43104 -31.31536 -28.03625 -27.38181 -25.95606 -24.78100 -23.85108 -23.48601 -22.39153 -21.47317 -21.03669 -19.24455 -18.95055 -18.58905 -17.82117 -17.38179 -16.98421 -16.91542 -16.71373 -16.63415 -16.40650 -15.98707 -15.67563 -15.51413 -15.35509 -15.07350 -14.90324 -14.50102 -14.07142 -13.91211 -13.72765 -13.41648 -13.28719 -13.17674 -13.12790 -12.93309 -12.84962 -12.70506 -12.57613 -12.19349 -12.10762 -12.01339 -11.97928 -11.77769 -11.70492 -11.61361 -10.79874 -10.61057 -9.83037 -9.80706 -9.73716 -8.68509 -7.77236 -5.32211 -0.13091 -0.07705 1.45053 1.47695 1.52990 1.58329 2.24566 2.38943 2.51620 2.80652 2.86116 3.27071 3.36126 3.37345 3.49534 3.71050 3.71295 3.81221 3.84519 4.09692 4.15717 4.20312 4.24102 4.44533 4.53796 4.59740 4.74830 4.75869 4.79452 4.83471 4.85465 4.90237 4.90261 4.99691 5.02247 5.12670 5.15552 5.17949 5.26228 5.39321 5.67672 5.70572 5.73459 5.78618 6.37632 6.76495 7.17443 7.41268 7.88373 8.37836 9.24223 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.004538 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.217281 B = 6168.819881 C = 7355.902822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.121 3.879 3 H 0.036 0.964 4 C 0.142 3.858 5 N -0.610 5.610 6 C 0.174 3.826 7 C -0.254 4.254 8 H 0.076 0.924 9 C -0.039 4.039 10 N -0.929 5.929 11 Si 0.950 3.050 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.266 1.266 15 N -0.678 5.678 16 C 0.541 3.459 17 O -0.600 6.600 18 C -0.177 4.177 19 H 0.114 0.886 20 C -0.128 4.128 21 C -0.099 4.099 22 H 0.107 0.893 23 C -0.140 4.140 24 C 0.112 3.888 25 F -0.127 7.127 26 C -0.153 4.153 27 C -0.054 4.054 28 C -0.155 4.155 29 C 0.105 3.895 30 F -0.145 7.145 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.069 0.931 36 H -0.005 1.005 37 H 0.012 0.988 38 H 0.030 0.970 39 H 0.242 0.758 40 H 0.406 0.594 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.173 0.827 44 H 0.189 0.811 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 -4.429 14.646 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.054 0.946 4 C 0.015 3.985 5 N -0.332 5.332 6 C 0.029 3.971 7 C -0.384 4.384 8 H 0.093 0.907 9 C -0.236 4.236 10 N -0.574 5.574 11 Si 0.779 3.221 12 H -0.206 1.206 13 H -0.231 1.231 14 H -0.191 1.191 15 N -0.325 5.325 16 C 0.328 3.672 17 O -0.483 6.483 18 C -0.198 4.198 19 H 0.132 0.868 20 C -0.165 4.165 21 C -0.117 4.117 22 H 0.125 0.875 23 C -0.141 4.141 24 C 0.092 3.908 25 F -0.105 7.105 26 C -0.172 4.172 27 C -0.071 4.071 28 C -0.174 4.174 29 C 0.085 3.915 30 F -0.124 7.124 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.014 0.986 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.242 0.758 41 H 0.126 0.874 42 H 0.167 0.833 43 H 0.191 0.809 44 H 0.206 0.794 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.674 -3.570 14.629 15.767 hybrid contribution 0.889 -0.316 -0.290 0.987 sum -3.785 -3.886 14.339 15.331 Atomic orbital electron populations 1.22018 0.93652 1.02737 1.01973 1.21741 0.94187 0.96002 0.86743 0.94605 1.21393 0.83451 0.99319 0.94291 1.44026 1.00738 1.22203 1.66248 1.20523 0.92644 0.90383 0.93558 1.19311 1.01370 0.88782 1.28962 0.90686 1.25807 1.00507 0.97977 0.99263 1.70230 1.16935 1.22753 1.47497 0.85606 0.77840 0.80146 0.78540 1.20612 1.23078 1.19141 1.45647 1.64306 1.14249 1.08307 1.19751 0.76499 0.86083 0.84880 1.90577 1.54063 1.17501 1.86160 1.22153 1.05611 1.03460 0.88554 0.86784 1.23784 0.94281 1.01445 0.96972 1.20734 0.97256 0.98637 0.95116 0.87508 1.19272 0.99348 0.93130 1.02386 1.17433 0.92142 0.83177 0.98009 1.91317 1.70623 1.60627 1.87929 1.21637 0.93995 1.03406 0.98119 1.21374 0.98579 0.89704 0.97465 1.21596 0.97036 1.00279 0.98485 1.17613 0.97233 0.78051 0.98557 1.91491 1.94510 1.36304 1.90063 0.90868 0.94363 0.89988 0.90849 0.91320 0.98623 0.96880 0.95159 0.94910 0.75787 0.87408 0.83349 0.80906 0.79412 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.48 71.98 0.68 -3.64 16 2 C 0.12 4.67 2.88 44.99 0.13 4.80 16 3 H 0.04 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.14 5.36 5.36 86.38 0.46 5.82 16 5 N -0.61 -29.20 2.80 -726.93 -2.03 -31.23 16 6 C 0.17 8.74 9.05 127.77 1.16 9.90 16 7 C -0.25 -12.87 7.95 84.03 0.67 -12.20 16 8 H 0.08 3.58 7.85 -2.91 -0.02 3.56 16 9 C -0.04 -2.11 5.18 84.86 0.44 -1.67 16 10 N -0.93 -54.85 10.88 21.65 0.24 -54.61 16 11 Si 0.95 43.27 29.56 68.60 2.03 45.30 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 N -0.68 -27.76 4.49 -442.54 -1.99 -29.74 16 16 C 0.54 23.69 7.58 87.66 0.66 24.35 16 17 O -0.60 -30.13 15.92 -3.02 -0.05 -30.18 16 18 C -0.18 -6.62 5.45 -11.54 -0.06 -6.68 16 19 H 0.11 4.47 7.88 -2.38 -0.02 4.45 16 20 C -0.13 -3.74 9.37 30.62 0.29 -3.45 16 21 C -0.10 -3.43 5.39 -11.51 -0.06 -3.50 16 22 H 0.11 4.19 7.22 -2.39 -0.02 4.18 16 23 C -0.14 -4.27 5.65 -19.78 -0.11 -4.39 16 24 C 0.11 2.86 7.05 22.37 0.16 3.02 16 25 F -0.13 -3.27 12.91 44.97 0.58 -2.69 16 26 C -0.15 -2.76 10.03 22.32 0.22 -2.53 16 27 C -0.05 -0.80 10.04 22.26 0.22 -0.57 16 28 C -0.16 -3.10 10.02 22.32 0.22 -2.88 16 29 C 0.10 3.04 7.25 22.37 0.16 3.21 16 30 F -0.15 -4.91 16.51 44.97 0.74 -4.17 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.45 7.85 -2.39 -0.02 2.43 16 35 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 36 H 0.00 -0.26 7.19 -2.39 -0.02 -0.28 16 37 H 0.01 0.67 7.67 -2.38 -0.02 0.66 16 38 H 0.03 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.41 16.20 7.40 -92.70 -0.69 15.51 16 41 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.15 3.71 5.13 -2.39 -0.01 3.70 16 43 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -72.47 378.81 5.10 -67.37 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.33 Total: 30.38 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.24 Total: 9.58 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -3.78 Total: -115.59 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.32 Total: -6.86 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.47 5.10 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268746207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.293 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds