Wall clock time and date at job start Tue Mar 31 2020 21:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47161 * 2 1 4 4 C 1.53002 * 109.47209 * 120.00228 * 2 1 3 5 5 N 1.46501 * 109.46985 * 174.99860 * 4 2 1 6 6 C 1.46496 * 120.00046 * 270.00187 * 5 4 2 7 7 C 1.36940 * 119.99840 * 90.00056 * 5 4 2 8 8 H 1.08005 * 120.00000 * 21.24592 * 7 5 4 9 9 C 1.38813 * 119.99930 * 201.24853 * 7 5 4 10 10 N 1.31621 * 120.00099 * 12.59537 * 9 7 5 11 11 Si 1.86799 * 120.00009 * 192.59459 * 9 7 5 12 12 H 1.48492 * 109.47166 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47057 * 120.00123 * 11 9 7 14 14 H 1.48507 * 109.46818 * 239.99848 * 11 9 7 15 15 N 1.46496 * 109.47184 * 240.00307 * 2 1 3 16 16 C 1.34778 * 120.00555 * 84.99224 * 15 2 1 17 17 O 1.21282 * 119.99588 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00522 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.56138 * 34.31344 * 18 16 15 20 20 C 1.53010 * 117.49918 * 248.63152 * 18 16 15 21 21 C 1.53000 * 117.50119 * 180.02562 * 18 16 15 22 22 H 1.09000 * 117.51460 * 0.02562 * 21 18 16 23 23 C 1.50698 * 117.49772 * 214.97809 * 21 18 16 24 24 C 1.38422 * 120.02114 * 162.47481 * 23 21 18 25 25 F 1.35097 * 120.01784 * 0.02562 * 24 23 21 26 26 C 1.38475 * 119.97081 * 180.25565 * 24 23 21 27 27 C 1.38215 * 120.02712 * 359.46818 * 26 24 23 28 28 C 1.38201 * 120.04640 * 0.25708 * 27 26 24 29 29 C 1.38410 * 120.02931 * 342.18127 * 23 21 18 30 30 F 1.35107 * 120.01041 * 0.02562 * 29 23 21 31 31 H 1.09004 * 109.47115 * 300.00065 * 1 2 3 32 32 H 1.08996 * 109.47209 * 59.99834 * 1 2 3 33 33 H 1.08995 * 109.46868 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46775 * 294.99483 * 4 2 1 35 35 H 1.08992 * 109.46892 * 54.99835 * 4 2 1 36 36 H 1.09000 * 109.47582 * 95.08048 * 6 5 4 37 37 H 1.09004 * 109.46678 * 215.07784 * 6 5 4 38 38 H 1.09001 * 109.47001 * 335.07561 * 6 5 4 39 39 H 0.96998 * 120.00472 * 180.02562 * 10 9 7 40 40 H 0.97008 * 120.00094 * 265.00538 * 15 2 1 41 41 H 1.08998 * 117.49798 * 145.02476 * 20 18 16 42 42 H 1.08994 * 117.51395 * 359.97438 * 20 18 16 43 43 H 1.07999 * 119.98738 * 179.75129 * 26 24 23 44 44 H 1.07992 * 119.97351 * 180.28025 * 27 26 24 45 45 H 1.07998 * 119.98563 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5610 7 6 4.2799 0.1648 1.7239 8 1 3.8713 0.8313 2.4691 9 6 5.5957 0.3129 1.3070 10 7 6.0224 -0.3230 0.2365 11 14 6.7606 1.4148 2.2651 12 1 6.0410 2.0116 3.4188 13 1 7.9081 0.6118 2.7585 14 1 7.2587 2.4976 1.3792 15 7 2.0184 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4116 18 6 2.6488 -0.7287 -3.5878 19 1 2.3514 -1.7731 -3.6820 20 6 4.0307 -0.3374 -4.1154 21 6 2.7732 0.0895 -4.8746 22 1 2.4926 1.1419 -4.8313 23 6 2.4747 -0.6100 -6.1756 24 6 2.2135 0.1300 -7.3158 25 9 2.2264 1.4799 -7.2631 26 6 1.9341 -0.5139 -8.5095 27 6 1.9269 -1.8949 -8.5652 28 6 2.1932 -2.6347 -7.4287 29 6 2.4676 -1.9930 -6.2327 30 9 2.7278 -2.7165 -5.1217 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7518 -0.1583 2.1369 35 1 1.6054 -1.7198 1.2951 36 1 4.3621 -1.7609 -0.4777 37 1 5.0422 -2.2446 1.0945 38 1 3.4389 -2.8374 0.5981 39 1 6.9418 -0.2198 -0.0547 40 1 2.2490 -1.6318 -1.1527 41 1 4.6422 -1.1243 -4.5568 42 1 4.5769 0.4342 -3.5728 43 1 1.7263 0.0632 -9.3984 44 1 1.7134 -2.3961 -9.4976 45 1 2.1877 -3.7137 -7.4734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268746208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:41 Heat of formation + Delta-G solvation = -63.040973 kcal Electronic energy + Delta-G solvation = -29851.338587 eV Core-core repulsion = 25506.033535 eV Total energy + Delta-G solvation = -4345.305052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.26741 -50.04080 -41.14884 -39.89450 -38.37979 -37.30229 -35.73301 -33.13905 -32.10571 -31.49934 -31.27141 -27.98327 -27.42343 -25.91845 -24.91775 -23.85753 -23.40248 -22.16915 -21.65842 -21.21468 -19.19935 -18.98493 -18.77898 -17.62577 -17.21368 -17.05620 -16.92731 -16.72791 -16.57962 -16.38248 -16.02402 -15.60113 -15.54644 -15.43508 -15.20509 -14.85116 -14.51865 -14.15460 -13.79577 -13.58349 -13.44160 -13.38882 -13.17622 -13.10543 -12.87459 -12.86946 -12.70243 -12.54007 -12.32064 -12.23234 -12.02214 -11.86046 -11.81255 -11.73330 -11.55915 -10.82024 -10.63713 -9.94056 -9.76598 -9.72611 -8.74238 -7.81415 -5.25940 -0.09499 -0.03460 1.41507 1.44015 1.52519 1.53573 2.16822 2.36834 2.50450 2.84385 2.91362 3.24342 3.32030 3.39595 3.49261 3.68770 3.76632 3.78831 3.86244 4.04722 4.18390 4.20554 4.25295 4.40114 4.51585 4.57928 4.74731 4.76327 4.79519 4.83649 4.87579 4.89784 4.93342 4.98734 5.06090 5.13344 5.17462 5.20999 5.35499 5.38665 5.64764 5.70510 5.77494 5.81043 6.33928 6.66105 7.18138 7.34726 7.90306 8.30314 9.20795 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003126 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.125746 B = 8954.307226 C = 9402.322367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.121 3.879 3 H 0.034 0.966 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.175 3.825 7 C -0.259 4.259 8 H 0.066 0.934 9 C -0.050 4.050 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.301 1.301 15 N -0.687 5.687 16 C 0.536 3.464 17 O -0.598 6.598 18 C -0.187 4.187 19 H 0.167 0.833 20 C -0.124 4.124 21 C -0.089 4.089 22 H 0.104 0.896 23 C -0.136 4.136 24 C 0.109 3.891 25 F -0.144 7.144 26 C -0.151 4.151 27 C -0.051 4.051 28 C -0.149 4.149 29 C 0.111 3.889 30 F -0.130 7.130 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.035 0.965 39 H 0.244 0.756 40 H 0.404 0.596 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.169 0.831 44 H 0.189 0.811 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -9.529 -18.751 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.053 0.947 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.030 3.970 7 C -0.390 4.390 8 H 0.084 0.916 9 C -0.245 4.245 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.215 1.215 14 H -0.229 1.229 15 N -0.335 5.335 16 C 0.324 3.676 17 O -0.480 6.480 18 C -0.207 4.207 19 H 0.184 0.816 20 C -0.162 4.162 21 C -0.107 4.107 22 H 0.122 0.878 23 C -0.138 4.138 24 C 0.090 3.910 25 F -0.123 7.123 26 C -0.170 4.170 27 C -0.069 4.069 28 C -0.167 4.167 29 C 0.092 3.908 30 F -0.108 7.108 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.240 0.760 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.187 0.813 44 H 0.206 0.794 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.126 -8.708 -18.722 23.455 hybrid contribution 1.363 1.085 1.083 2.052 sum -9.763 -7.623 -17.639 21.553 Atomic orbital electron populations 1.22018 0.93641 1.02915 1.01825 1.21722 0.94104 0.96366 0.86483 0.94738 1.21367 0.83303 0.99299 0.94428 1.44116 1.00840 1.20527 1.67917 1.20634 0.94258 0.86009 0.96077 1.19502 0.93901 1.09922 1.15669 0.91603 1.25624 1.00147 1.01043 0.97707 1.70214 1.15674 1.47169 1.24328 0.85336 0.79386 0.78264 0.78264 1.19331 1.21498 1.22891 1.45675 1.65190 1.14023 1.08622 1.20020 0.76437 0.86190 0.85001 1.90601 1.53380 1.17917 1.86101 1.22960 1.03200 1.02721 0.91829 0.81616 1.22907 0.89293 1.03159 1.00821 1.20689 1.02857 0.99054 0.88146 0.87799 1.19180 1.07551 0.93042 0.94050 1.17529 1.02353 0.76674 0.94457 1.91494 1.94004 1.29672 1.97107 1.21593 1.02388 0.96584 0.96430 1.21375 0.94278 0.91814 0.99407 1.21614 1.01757 1.03104 0.90239 1.17473 1.01875 0.87207 0.84287 1.91321 1.91500 1.77242 1.50741 0.90320 0.94489 0.90390 0.91715 0.90437 0.96956 0.96869 0.94630 0.94693 0.75992 0.85920 0.90260 0.81319 0.79422 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.48 71.98 0.68 -3.67 16 2 C 0.12 4.68 2.88 44.99 0.13 4.80 16 3 H 0.03 1.68 7.58 -2.39 -0.02 1.66 16 4 C 0.14 5.43 5.33 86.38 0.46 5.89 16 5 N -0.61 -29.53 2.78 -726.94 -2.02 -31.55 16 6 C 0.17 8.14 7.59 127.77 0.97 9.10 16 7 C -0.26 -14.34 9.68 84.03 0.81 -13.53 16 8 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 9 C -0.05 -2.83 5.11 84.86 0.43 -2.40 16 10 N -0.93 -54.80 10.58 21.65 0.23 -54.57 16 11 Si 0.96 46.68 29.57 68.60 2.03 48.71 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 14 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 15 N -0.69 -26.33 4.42 -442.53 -1.96 -28.28 16 16 C 0.54 22.43 7.58 87.65 0.66 23.10 16 17 O -0.60 -29.74 15.92 -3.04 -0.05 -29.79 16 18 C -0.19 -6.40 5.32 -11.54 -0.06 -6.46 16 19 H 0.17 4.86 5.14 -2.39 -0.01 4.85 16 20 C -0.12 -4.28 9.50 30.59 0.29 -3.99 16 21 C -0.09 -2.91 5.38 -11.55 -0.06 -2.97 16 22 H 0.10 3.96 7.23 -2.39 -0.02 3.94 16 23 C -0.14 -3.49 5.65 -19.78 -0.11 -3.61 16 24 C 0.11 2.48 7.25 22.37 0.16 2.64 16 25 F -0.14 -3.92 16.51 44.97 0.74 -3.17 16 26 C -0.15 -2.05 10.03 22.32 0.22 -1.82 16 27 C -0.05 -0.45 10.04 22.26 0.22 -0.23 16 28 C -0.15 -1.86 10.02 22.32 0.22 -1.64 16 29 C 0.11 2.32 7.04 22.37 0.16 2.47 16 30 F -0.13 -2.99 12.91 44.97 0.58 -2.41 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 35 H 0.08 2.42 7.86 -2.39 -0.02 2.41 16 36 H 0.01 0.62 6.96 -2.39 -0.02 0.60 16 37 H 0.01 0.66 7.21 -2.39 -0.02 0.64 16 38 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16 39 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.40 13.92 7.18 -92.70 -0.67 13.25 16 41 H 0.12 3.65 7.86 -2.39 -0.02 3.63 16 42 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 45 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -75.25 377.69 5.11 -70.14 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.36 Total: 23.25 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.20 Total: 7.69 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.75 Total: -114.41 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.79 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 1.32 Total: -5.59 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.25 5.11 -70.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268746208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds