Wall clock time and date at job start Tue Mar 31 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.53005 * 109.47149 * 239.99679 * 2 1 3 5 5 C 1.50699 * 109.46828 * 65.00175 * 4 2 1 6 6 C 1.38261 * 119.99479 * 89.99757 * 5 4 2 7 7 C 1.38223 * 120.02658 * 179.97438 * 6 5 4 8 8 C 1.38237 * 120.01304 * 0.02645 * 7 6 5 9 9 C 1.38333 * 119.98471 * 359.97438 * 8 7 6 10 10 Cl 1.73601 * 120.00894 * 180.02562 * 9 8 7 11 11 C 1.38193 * 119.99184 * 269.72048 * 5 4 2 12 12 C 1.50698 * 109.47005 * 119.99940 * 2 1 3 13 13 O 1.21285 * 119.99811 * 120.00013 * 12 2 1 14 14 N 1.34771 * 120.00090 * 299.99846 * 12 2 1 15 15 C 1.46500 * 120.00148 * 180.02562 * 14 12 2 16 16 H 1.08999 * 109.47192 * 324.99518 * 15 14 12 17 17 C 1.52996 * 109.47255 * 85.00209 * 15 14 12 18 18 C 1.53007 * 109.47014 * 205.00142 * 15 14 12 19 19 N 1.46504 * 109.47162 * 54.99803 * 18 15 14 20 20 C 1.46493 * 119.99703 * 269.99781 * 19 18 15 21 21 C 1.36937 * 119.99812 * 90.00071 * 19 18 15 22 22 H 1.07998 * 120.00108 * 339.33402 * 21 19 18 23 23 C 1.38807 * 119.99812 * 159.60604 * 21 19 18 24 24 N 1.31617 * 120.00173 * 345.26322 * 23 21 19 25 25 Si 1.86798 * 120.00173 * 165.25983 * 23 21 19 26 26 H 1.48507 * 109.46882 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47288 * 119.99947 * 25 23 21 28 28 H 1.48496 * 109.47514 * 240.00357 * 25 23 21 29 29 H 1.08998 * 109.47416 * 300.00051 * 1 2 3 30 30 H 1.09001 * 109.47241 * 60.00662 * 1 2 3 31 31 H 1.09007 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47071 * 184.99898 * 4 2 1 33 33 H 1.08999 * 109.47033 * 305.00309 * 4 2 1 34 34 H 1.08000 * 119.98507 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.99264 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.00613 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.01038 * 0.02562 * 11 5 4 38 38 H 0.97001 * 120.00066 * 0.02562 * 14 12 2 39 39 H 1.09004 * 109.47142 * 180.02562 * 17 15 14 40 40 H 1.08999 * 109.46866 * 299.99803 * 17 15 14 41 41 H 1.08998 * 109.47583 * 60.00105 * 17 15 14 42 42 H 1.09004 * 109.46857 * 294.99719 * 18 15 14 43 43 H 1.08999 * 109.46779 * 175.00001 * 18 15 14 44 44 H 1.08997 * 109.47560 * 264.72582 * 20 19 18 45 45 H 1.08998 * 109.47606 * 24.73120 * 20 19 18 46 46 H 1.09008 * 109.46823 * 144.72681 * 20 19 18 47 47 H 0.96997 * 120.00714 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4817 1.0331 -2.9792 7 6 2.1169 1.7470 -4.1052 8 6 0.9113 1.4857 -4.7291 9 6 0.0702 0.5092 -4.2266 10 17 -1.4437 0.1801 -5.0100 11 6 0.4385 -0.2091 -3.1028 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.1955 -0.9402 3.6507 16 1 2.2325 -2.0130 3.4615 17 6 3.5979 -0.4342 3.9943 18 6 1.2514 -0.6612 4.8220 19 7 -0.1146 -1.0362 4.4483 20 6 -0.9986 -0.0513 3.8202 21 6 -0.5650 -2.3073 4.6862 22 1 0.1406 -3.1126 4.8277 23 6 -1.9285 -2.5618 4.7398 24 7 -2.7801 -1.5648 4.8537 25 14 -2.5548 -4.3194 4.6501 26 1 -1.4037 -5.2493 4.5257 27 1 -3.3162 -4.6372 5.8849 28 1 -3.4424 -4.4690 3.4690 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7995 -1.2056 33 1 1.6054 -1.7199 -1.2951 34 1 3.4235 1.2378 -2.4918 35 1 2.7739 2.5090 -4.4976 36 1 0.6262 2.0439 -5.6086 37 1 -0.2160 -0.9744 -2.7124 38 1 1.1488 0.5385 2.5435 39 1 3.9617 -0.9481 4.8841 40 1 4.2704 -0.6330 3.1599 41 1 3.5609 0.6386 4.1836 42 1 1.2823 0.4001 5.0687 43 1 1.5645 -1.2447 5.6878 44 1 -1.6190 0.4189 4.5831 45 1 -0.3986 0.7091 3.3204 46 1 -1.6362 -0.5492 3.0895 47 1 -3.7329 -1.7425 4.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268760915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:16 Heat of formation + Delta-G solvation = -12.127480 kcal Electronic energy + Delta-G solvation = -27365.785885 eV Core-core repulsion = 23574.485288 eV Total energy + Delta-G solvation = -3791.300597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.10660 -39.25544 -36.80884 -36.48443 -34.86456 -34.06717 -31.71270 -30.99230 -30.83256 -29.85925 -26.84367 -26.21442 -25.65366 -24.02208 -22.86657 -21.97508 -21.15217 -20.19710 -19.51161 -17.30844 -16.86949 -16.65367 -15.88271 -15.64343 -15.55931 -15.06259 -14.79625 -14.19762 -14.08549 -13.78256 -13.71233 -13.44009 -13.22092 -13.08040 -12.79229 -12.68897 -12.14006 -12.08345 -11.95099 -11.81305 -11.62287 -11.60198 -11.45249 -11.32152 -11.09114 -10.99409 -10.94849 -10.84188 -10.63974 -10.61045 -10.19696 -9.98494 -9.86903 -9.33541 -9.10401 -8.86499 -8.65140 -8.43887 -6.78253 -5.74166 -3.18047 0.91226 1.01463 1.91501 3.06139 3.33758 3.37984 3.46178 3.48743 3.67784 4.48445 4.50678 4.56230 4.78910 4.87084 4.96102 4.98807 5.14687 5.16680 5.29885 5.38099 5.44118 5.45887 5.62156 5.63475 5.73679 5.79153 5.86501 5.91231 5.94027 5.98196 6.06690 6.07550 6.14328 6.18209 6.29240 6.38579 6.43649 6.52625 6.56514 6.58801 6.79155 7.09174 7.30226 7.65484 7.80369 8.01273 8.35902 8.69466 9.21535 9.84629 10.31424 11.30758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.003065 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.910751 B = 9134.119835 C =10814.551856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.062 4.062 5 C -0.060 4.060 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.032 4.032 10 Cl -0.074 7.074 11 C -0.105 4.105 12 C 0.517 3.483 13 O -0.552 6.552 14 N -0.702 5.702 15 C 0.116 3.884 16 H 0.083 0.917 17 C -0.158 4.158 18 C 0.143 3.857 19 N -0.598 5.598 20 C 0.169 3.831 21 C -0.250 4.250 22 H 0.068 0.932 23 C 0.002 3.998 24 N -0.908 5.908 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.396 0.604 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.029 0.971 45 H -0.009 1.009 46 H 0.043 0.957 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 9.706 -16.382 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.111 0.889 4 C -0.100 4.100 5 C -0.060 4.060 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.138 4.138 9 C -0.059 4.059 10 Cl -0.045 7.045 11 C -0.123 4.123 12 C 0.303 3.697 13 O -0.431 6.431 14 N -0.352 5.352 15 C 0.008 3.992 16 H 0.102 0.898 17 C -0.217 4.217 18 C 0.014 3.986 19 N -0.320 5.320 20 C 0.024 3.976 21 C -0.380 4.380 22 H 0.086 0.914 23 C -0.196 4.196 24 N -0.554 5.554 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.009 0.991 46 H 0.062 0.938 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.657 8.964 -16.482 21.101 hybrid contribution -0.967 -0.551 -0.112 1.118 sum 8.690 8.413 -16.594 20.534 Atomic orbital electron populations 1.21873 0.92477 1.03386 1.02766 1.21240 0.98079 1.00358 0.92771 0.88949 1.20440 1.02265 0.98315 0.88995 1.19909 0.93454 0.96240 0.96439 1.21202 0.99923 0.95679 0.96335 1.21090 0.95962 0.99685 0.95748 1.21027 0.94273 0.97621 1.00856 1.20944 0.89066 0.99497 0.96390 1.98379 1.31086 1.94861 1.80141 1.21070 0.96966 1.00056 0.94243 1.20405 0.80055 0.84489 0.84782 1.90654 1.39011 1.26483 1.86934 1.46033 1.52306 1.31537 1.05366 1.21901 0.92956 0.97935 0.86362 0.89847 1.22120 0.97466 1.00749 1.01346 1.21052 0.85865 0.97969 0.93699 1.43829 1.08375 1.10495 1.69336 1.20819 0.91336 0.89536 0.95879 1.19208 0.90578 0.84755 1.43458 0.91396 1.24916 0.96465 0.97176 1.01035 1.70075 1.01519 1.29314 1.54463 0.86238 0.78707 0.84724 0.77242 1.20316 1.21795 1.21655 0.91508 0.91701 0.91664 0.89774 0.89855 0.85354 0.85190 0.85205 0.84698 0.76779 0.92008 0.92962 0.93108 0.94192 0.91975 0.95247 0.99058 0.93829 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.67 37.16 0.32 -1.56 16 2 C -0.10 -1.28 2.71 -91.77 -0.25 -1.53 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.06 -0.73 4.19 -27.88 -0.12 -0.85 16 5 C -0.06 -0.62 4.70 -104.63 -0.49 -1.11 16 6 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 7 C -0.11 -0.85 10.05 -39.59 -0.40 -1.24 16 8 C -0.12 -1.04 9.83 -39.55 -0.39 -1.43 16 9 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 10 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 11 C -0.10 -1.11 7.77 -39.55 -0.31 -1.42 16 12 C 0.52 8.39 7.12 -10.99 -0.08 8.32 16 13 O -0.55 -10.83 15.58 5.55 0.09 -10.74 16 14 N -0.70 -11.30 4.41 -53.81 -0.24 -11.53 16 15 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 16 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 17 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 18 C 0.14 2.72 5.29 -4.04 -0.02 2.70 16 19 N -0.60 -14.14 2.78 -181.12 -0.50 -14.65 16 20 C 0.17 3.84 8.51 59.84 0.51 4.35 16 21 C -0.25 -6.74 9.67 -15.06 -0.15 -6.89 16 22 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 23 C 0.00 0.05 5.07 -17.43 -0.09 -0.03 16 24 N -0.91 -25.93 10.65 55.49 0.59 -25.34 16 25 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.07 0.89 7.56 -51.93 -0.39 0.49 16 30 H 0.06 0.73 6.28 -51.93 -0.33 0.40 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 33 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.43 8.05 -52.48 -0.42 1.01 16 38 H 0.40 5.90 5.62 -40.82 -0.23 5.67 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 44 H 0.03 0.74 7.39 -51.93 -0.38 0.36 16 45 H -0.01 -0.17 5.76 -51.93 -0.30 -0.46 16 46 H 0.04 1.09 7.22 -51.92 -0.37 0.71 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -30.93 393.89 -10.01 -40.93 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.42 Total: 3.39 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.93 Total: -2.72 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.15 Total: -51.52 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.93 -10.01 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268760915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.807 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds