Wall clock time and date at job start Tue Mar 31 2020 20:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.53005 * 109.47149 * 239.99679 * 2 1 3 5 5 C 1.50699 * 109.46828 * 65.00175 * 4 2 1 6 6 C 1.38261 * 119.99479 * 89.99757 * 5 4 2 7 7 C 1.38223 * 120.02658 * 179.97438 * 6 5 4 8 8 C 1.38237 * 120.01304 * 0.02645 * 7 6 5 9 9 C 1.38333 * 119.98471 * 359.97438 * 8 7 6 10 10 Cl 1.73601 * 120.00894 * 180.02562 * 9 8 7 11 11 C 1.38193 * 119.99184 * 269.72048 * 5 4 2 12 12 C 1.50698 * 109.47005 * 119.99940 * 2 1 3 13 13 O 1.21285 * 119.99811 * 120.00013 * 12 2 1 14 14 N 1.34771 * 120.00090 * 299.99846 * 12 2 1 15 15 C 1.46500 * 120.00148 * 180.02562 * 14 12 2 16 16 H 1.08999 * 109.47192 * 324.99518 * 15 14 12 17 17 C 1.52996 * 109.47255 * 85.00209 * 15 14 12 18 18 C 1.53007 * 109.47014 * 205.00142 * 15 14 12 19 19 N 1.46504 * 109.47162 * 54.99803 * 18 15 14 20 20 C 1.46493 * 119.99703 * 269.99781 * 19 18 15 21 21 C 1.36937 * 119.99812 * 90.00071 * 19 18 15 22 22 H 1.07998 * 120.00108 * 339.33402 * 21 19 18 23 23 C 1.38807 * 119.99812 * 159.60604 * 21 19 18 24 24 N 1.31617 * 120.00173 * 345.26322 * 23 21 19 25 25 Si 1.86798 * 120.00173 * 165.25983 * 23 21 19 26 26 H 1.48507 * 109.46882 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47288 * 119.99947 * 25 23 21 28 28 H 1.48496 * 109.47514 * 240.00357 * 25 23 21 29 29 H 1.08998 * 109.47416 * 300.00051 * 1 2 3 30 30 H 1.09001 * 109.47241 * 60.00662 * 1 2 3 31 31 H 1.09007 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47071 * 184.99898 * 4 2 1 33 33 H 1.08999 * 109.47033 * 305.00309 * 4 2 1 34 34 H 1.08000 * 119.98507 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.99264 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.00613 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.01038 * 0.02562 * 11 5 4 38 38 H 0.97001 * 120.00066 * 0.02562 * 14 12 2 39 39 H 1.09004 * 109.47142 * 180.02562 * 17 15 14 40 40 H 1.08999 * 109.46866 * 299.99803 * 17 15 14 41 41 H 1.08998 * 109.47583 * 60.00105 * 17 15 14 42 42 H 1.09004 * 109.46857 * 294.99719 * 18 15 14 43 43 H 1.08999 * 109.46779 * 175.00001 * 18 15 14 44 44 H 1.08997 * 109.47560 * 264.72582 * 20 19 18 45 45 H 1.08998 * 109.47606 * 24.73120 * 20 19 18 46 46 H 1.09008 * 109.46823 * 144.72681 * 20 19 18 47 47 H 0.96997 * 120.00714 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4817 1.0331 -2.9792 7 6 2.1169 1.7470 -4.1052 8 6 0.9113 1.4857 -4.7291 9 6 0.0702 0.5092 -4.2266 10 17 -1.4437 0.1801 -5.0100 11 6 0.4385 -0.2091 -3.1028 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.1955 -0.9402 3.6507 16 1 2.2325 -2.0130 3.4615 17 6 3.5979 -0.4342 3.9943 18 6 1.2514 -0.6612 4.8220 19 7 -0.1146 -1.0362 4.4483 20 6 -0.9986 -0.0513 3.8202 21 6 -0.5650 -2.3073 4.6862 22 1 0.1406 -3.1126 4.8277 23 6 -1.9285 -2.5618 4.7398 24 7 -2.7801 -1.5648 4.8537 25 14 -2.5548 -4.3194 4.6501 26 1 -1.4037 -5.2493 4.5257 27 1 -3.3162 -4.6372 5.8849 28 1 -3.4424 -4.4690 3.4690 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7995 -1.2056 33 1 1.6054 -1.7199 -1.2951 34 1 3.4235 1.2378 -2.4918 35 1 2.7739 2.5090 -4.4976 36 1 0.6262 2.0439 -5.6086 37 1 -0.2160 -0.9744 -2.7124 38 1 1.1488 0.5385 2.5435 39 1 3.9617 -0.9481 4.8841 40 1 4.2704 -0.6330 3.1599 41 1 3.5609 0.6386 4.1836 42 1 1.2823 0.4001 5.0687 43 1 1.5645 -1.2447 5.6878 44 1 -1.6190 0.4189 4.5831 45 1 -0.3986 0.7091 3.3204 46 1 -1.6362 -0.5492 3.0895 47 1 -3.7329 -1.7425 4.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268760915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:15 Heat of formation + Delta-G solvation = -28.048012 kcal Electronic energy + Delta-G solvation = -27366.476251 eV Core-core repulsion = 23574.485288 eV Total energy + Delta-G solvation = -3791.990963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18920 -40.23375 -38.17266 -37.48940 -35.97254 -35.68532 -33.17648 -32.31862 -31.68946 -31.06533 -28.03995 -27.74033 -27.41944 -25.16136 -23.59462 -23.40707 -22.35732 -21.58653 -20.73562 -18.79710 -18.27542 -17.62153 -17.05830 -16.94473 -16.69544 -16.34076 -15.97178 -15.51450 -15.45308 -15.17091 -14.89965 -14.60584 -14.39703 -14.24147 -14.02534 -13.71184 -13.64705 -13.38025 -13.22071 -13.08078 -12.80978 -12.76307 -12.64182 -12.48042 -12.40257 -12.37424 -12.27302 -12.02094 -11.98760 -11.94392 -11.84457 -11.75398 -11.71210 -10.69189 -10.60842 -9.90540 -9.82958 -9.60695 -8.75438 -7.83153 -5.27682 0.20247 0.30746 1.17197 1.40917 1.44504 1.53065 1.76610 2.36190 2.49399 2.69515 3.29282 3.58498 3.70871 3.81266 3.88360 4.00250 4.03020 4.16217 4.22546 4.34666 4.38329 4.43147 4.46210 4.53540 4.61115 4.76272 4.78025 4.81703 4.85236 4.90767 4.94936 5.00312 5.02142 5.17396 5.20589 5.24958 5.29493 5.32128 5.41057 5.44528 5.59940 5.62495 5.72989 5.77600 5.88468 6.32109 6.71288 7.16561 7.40165 7.89285 8.28707 9.18738 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.003065 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.910751 B = 9134.119835 C =10814.551856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.124 0.876 4 C -0.055 4.055 5 C -0.068 4.068 6 C -0.112 4.112 7 C -0.100 4.100 8 C -0.119 4.119 9 C -0.046 4.046 10 Cl -0.081 7.081 11 C -0.119 4.119 12 C 0.512 3.488 13 O -0.590 6.590 14 N -0.699 5.699 15 C 0.125 3.875 16 H 0.043 0.957 17 C -0.145 4.145 18 C 0.142 3.858 19 N -0.612 5.612 20 C 0.185 3.815 21 C -0.254 4.254 22 H 0.061 0.939 23 C -0.047 4.047 24 N -0.932 5.932 25 Si 0.954 3.046 26 H -0.275 1.275 27 H -0.290 1.290 28 H -0.293 1.293 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.404 0.596 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.002 0.998 45 H 0.036 0.964 46 H 0.012 0.988 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 11.806 -17.359 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.142 0.858 4 C -0.093 4.093 5 C -0.068 4.068 6 C -0.130 4.130 7 C -0.118 4.118 8 C -0.137 4.137 9 C -0.072 4.072 10 Cl -0.052 7.052 11 C -0.138 4.138 12 C 0.299 3.701 13 O -0.471 6.471 14 N -0.350 5.350 15 C 0.017 3.983 16 H 0.061 0.939 17 C -0.204 4.204 18 C 0.015 3.985 19 N -0.335 5.335 20 C 0.040 3.960 21 C -0.385 4.385 22 H 0.078 0.922 23 C -0.242 4.242 24 N -0.580 5.580 25 Si 0.784 3.216 26 H -0.200 1.200 27 H -0.217 1.217 28 H -0.221 1.221 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.241 0.759 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.020 0.980 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.377 11.081 -17.454 23.598 hybrid contribution -1.420 -1.183 0.173 1.856 sum 9.957 9.897 -17.281 22.265 Atomic orbital electron populations 1.21805 0.92764 1.01900 1.03347 1.21224 0.97493 1.01487 0.91062 0.85844 1.20301 1.01959 0.97449 0.89545 1.19756 0.93835 0.97065 0.96161 1.21454 1.00185 0.94819 0.96513 1.21447 0.95770 0.99652 0.94904 1.21329 0.94224 0.96940 1.01250 1.21071 0.89274 1.00287 0.96565 1.98373 1.31651 1.94989 1.80194 1.21044 0.97340 1.00393 0.94974 1.21074 0.79284 0.84046 0.85668 1.90637 1.40796 1.28199 1.87472 1.46011 1.52306 1.31536 1.05190 1.21610 0.94564 0.96033 0.86097 0.93857 1.21997 0.94684 1.02217 1.01533 1.21229 0.83636 0.99414 0.94218 1.44027 1.10101 1.09710 1.69658 1.20554 0.91302 0.89728 0.94441 1.19409 0.90596 0.86235 1.42211 0.92151 1.25514 0.96823 1.00067 1.01838 1.70205 1.01291 1.30572 1.55895 0.85398 0.77998 0.81428 0.76822 1.19977 1.21654 1.22054 0.91901 0.90027 0.94214 0.89775 0.92102 0.83436 0.82081 0.83454 0.85815 0.75905 0.90866 0.93575 0.90714 0.91444 0.92282 0.97954 0.94553 0.96913 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.67 71.98 0.62 -2.90 16 2 C -0.09 -2.16 2.71 -11.54 -0.03 -2.19 16 3 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.05 -1.25 4.19 29.85 0.13 -1.12 16 5 C -0.07 -1.30 4.70 -19.87 -0.09 -1.39 16 6 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 7 C -0.10 -1.22 10.05 22.27 0.22 -1.00 16 8 C -0.12 -1.76 9.83 22.29 0.22 -1.55 16 9 C -0.05 -0.87 6.32 22.32 0.14 -0.73 16 10 Cl -0.08 -1.60 28.96 -2.72 -0.08 -1.68 16 11 C -0.12 -2.47 7.77 22.29 0.17 -2.29 16 12 C 0.51 16.33 7.12 87.66 0.62 16.95 16 13 O -0.59 -23.39 15.58 -3.05 -0.05 -23.44 16 14 N -0.70 -21.64 4.41 -442.53 -1.95 -23.60 16 15 C 0.12 4.20 2.88 44.99 0.13 4.33 16 16 H 0.04 1.82 7.58 -2.39 -0.02 1.81 16 17 C -0.15 -3.79 9.48 71.98 0.68 -3.10 16 18 C 0.14 5.22 5.29 86.38 0.46 5.68 16 19 N -0.61 -28.89 2.78 -726.93 -2.02 -30.92 16 20 C 0.18 8.36 8.51 127.77 1.09 9.45 16 21 C -0.25 -13.85 9.67 84.03 0.81 -13.04 16 22 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 23 C -0.05 -2.64 5.07 84.86 0.43 -2.21 16 24 N -0.93 -54.23 10.65 21.65 0.23 -54.00 16 25 Si 0.95 46.07 29.58 68.60 2.03 48.09 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H 0.06 1.60 7.56 -2.39 -0.02 1.58 16 30 H 0.08 1.77 6.28 -2.39 -0.01 1.75 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.91 7.90 -2.39 -0.02 1.89 16 33 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.12 2.75 8.05 -2.91 -0.02 2.72 16 38 H 0.40 11.10 5.62 -92.71 -0.52 10.58 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 43 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 44 H 0.00 0.11 7.39 -2.39 -0.02 0.09 16 45 H 0.04 1.28 5.76 -2.39 -0.01 1.27 16 46 H 0.01 0.62 7.22 -2.38 -0.02 0.61 16 47 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -68.60 393.89 4.42 -64.18 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.44 Total: 17.89 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.82 Total: 3.47 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.75 Total: -108.52 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -68.60 4.42 -64.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268760915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.131 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds