Wall clock time and date at job start Tue Mar 31 2020 21:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20757 * 119.99487 * 2 1 4 4 C 1.50695 * 119.99801 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47344 * 45.01010 * 4 2 1 6 6 C 1.52999 * 109.47455 * 285.00110 * 4 2 1 7 7 N 1.46510 * 109.46545 * 165.00028 * 4 2 1 8 8 C 1.34275 * 119.37560 * 59.98358 * 7 4 2 9 9 O 1.21273 * 118.97527 * 2.01714 * 8 7 4 10 10 C 1.50276 * 122.05118 * 181.99736 * 8 7 4 11 11 O 1.42825 * 110.49526 * 341.59129 * 10 8 7 12 12 C 1.43389 * 113.34189 * 51.31251 * 11 10 8 13 13 C 1.45910 * 119.37850 * 239.99962 * 7 4 2 14 14 C 1.53512 * 113.76059 * 295.68081 * 13 7 4 15 15 N 1.47657 * 85.98254 * 91.24461 * 14 13 7 16 16 C 1.34775 * 134.45729 * 204.33403 * 15 14 13 17 17 O 1.21282 * 119.99768 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00252 * 359.97438 * 16 15 14 19 19 C 1.52995 * 109.47503 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47359 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00225 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99615 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00299 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46766 * 90.00259 * 24 22 20 26 26 H 1.48496 * 109.47103 * 210.00015 * 24 22 20 27 27 H 1.48500 * 109.46892 * 330.00321 * 24 22 20 28 28 C 1.47669 * 91.08464 * 24.32045 * 15 14 13 29 29 H 1.09000 * 109.47353 * 239.99813 * 1 2 3 30 30 H 1.08996 * 109.47214 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47126 * 119.99665 * 1 2 3 32 32 H 1.08995 * 109.46812 * 300.00262 * 6 4 2 33 33 H 1.08995 * 109.47007 * 60.00105 * 6 4 2 34 34 H 1.09000 * 109.47202 * 180.02562 * 6 4 2 35 35 H 1.09001 * 109.26811 * 221.33448 * 10 8 7 36 36 H 1.08991 * 109.27329 * 101.85366 * 10 8 7 37 37 H 1.09004 * 109.70418 * 54.07477 * 12 11 10 38 38 H 1.08994 * 109.70458 * 174.68654 * 12 11 10 39 39 H 1.09008 * 113.78628 * 205.50985 * 14 13 7 40 40 H 1.08994 * 113.79346 * 336.97367 * 14 13 7 41 41 H 1.09004 * 109.47381 * 299.99803 * 18 16 15 42 42 H 1.09010 * 109.47202 * 59.99515 * 18 16 15 43 43 H 1.09001 * 109.46970 * 299.99910 * 19 18 16 44 44 H 1.08996 * 109.47154 * 59.99765 * 19 18 16 45 45 H 0.97002 * 120.00155 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.78833 * 221.41053 * 28 15 14 47 47 H 1.08999 * 113.79527 * 89.94660 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.8130 -1.9833 -0.7259 6 6 2.1922 -1.9329 1.3942 7 7 3.6601 -1.0610 -0.3570 8 6 4.4037 -0.2475 0.4100 9 8 3.9076 0.2380 1.4044 10 6 5.8317 0.0796 0.0749 11 8 6.3620 -0.8780 -0.8426 12 6 5.5349 -1.0775 -1.9968 13 6 4.2196 -1.7060 -1.5402 14 6 4.2738 -3.2371 -1.4426 15 7 2.9366 -3.2207 -2.0686 16 6 1.8894 -4.0689 -2.0802 17 8 0.8862 -3.7853 -2.7000 18 6 1.9647 -5.3696 -1.3232 19 6 0.6541 -6.1390 -1.4992 20 6 0.7293 -7.4395 -0.7416 21 1 1.6227 -7.6923 -0.1900 22 6 -0.3422 -8.3072 -0.7534 23 7 -0.2764 -9.4424 -0.0927 24 14 -1.8874 -7.8704 -1.7080 25 1 -1.7736 -8.3852 -3.0963 26 1 -3.0673 -8.4841 -1.0476 27 1 -2.0493 -6.3946 -1.7391 28 6 3.2066 -1.9022 -2.6764 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.6398 -1.2546 2.1205 33 1 1.1509 -2.1144 1.6602 34 1 2.7375 -2.8766 1.3947 35 1 6.4266 0.0705 0.9882 36 1 5.8776 1.0717 -0.3740 37 1 5.3371 -0.1193 -2.4773 38 1 6.0370 -1.7441 -2.6979 39 1 5.0453 -3.6903 -2.0652 40 1 4.2758 -3.6127 -0.4194 41 1 2.7914 -5.9668 -1.7081 42 1 2.1263 -5.1652 -0.2647 43 1 -0.1723 -5.5418 -1.1139 44 1 0.4921 -6.3434 -2.5575 45 1 -1.0303 -10.0527 -0.1007 46 1 2.3600 -1.2169 -2.6339 47 1 3.6608 -1.9587 -3.6657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:46 Heat of formation + Delta-G solvation = -92.188590 kcal Electronic energy + Delta-G solvation = -31641.188778 eV Core-core repulsion = 27405.707306 eV Total energy + Delta-G solvation = -4235.481472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12532 -39.92649 -39.20901 -38.10510 -37.50412 -34.88478 -33.57915 -32.34397 -31.44460 -30.53702 -29.62059 -28.03389 -27.08711 -26.54102 -25.35263 -24.17635 -22.57682 -20.95631 -20.18251 -19.00973 -18.94400 -17.83936 -17.46647 -17.15700 -16.47388 -16.26468 -16.15258 -15.65196 -15.50170 -15.22831 -15.17074 -14.85182 -14.55343 -14.18404 -14.10367 -13.80851 -13.51677 -13.28472 -13.17716 -12.90514 -12.66591 -12.64045 -12.48321 -12.37598 -12.25767 -12.11402 -11.83584 -11.71848 -11.51258 -11.33041 -11.04137 -10.84332 -10.27160 -10.15144 -9.98766 -9.87365 -9.72398 -9.36013 -9.25327 -9.00590 -8.74951 -8.56763 -6.08763 -4.08216 1.80672 2.22522 2.31824 2.62774 2.88403 3.15075 3.32450 3.39655 3.48581 3.71703 3.85019 4.03595 4.14625 4.24188 4.44753 4.64345 4.77646 4.82161 4.83419 4.90841 4.95039 4.99785 5.04518 5.10448 5.16442 5.21218 5.25603 5.26414 5.30277 5.35743 5.48841 5.63329 5.72451 5.75719 5.95540 6.00052 6.01022 6.13920 6.30998 6.56328 7.03091 7.25545 7.32648 7.33678 7.58321 7.72205 7.83134 8.32856 8.47116 8.93674 9.53733 11.03975 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003462 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.637890 B = 8086.553242 C = 8732.009491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.347 3.653 3 O -0.438 6.438 4 C 0.089 3.911 5 H 0.126 0.874 6 C -0.161 4.161 7 N -0.574 5.574 8 C 0.498 3.502 9 O -0.515 6.515 10 C 0.050 3.950 11 O -0.363 6.363 12 C 0.067 3.933 13 C 0.097 3.903 14 C 0.103 3.897 15 N -0.654 5.654 16 C 0.534 3.466 17 O -0.532 6.532 18 C -0.115 4.115 19 C 0.003 3.997 20 C -0.526 4.526 21 H 0.073 0.927 22 C 0.071 3.929 23 N -0.902 5.902 24 Si 0.876 3.124 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 C 0.100 3.900 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.024 0.976 44 H 0.019 0.981 45 H 0.264 0.736 46 H 0.084 0.916 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.758 20.054 -3.088 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.220 3.780 3 O -0.309 6.309 4 C -0.015 4.015 5 H 0.143 0.857 6 C -0.219 4.219 7 N -0.307 5.307 8 C 0.287 3.713 9 O -0.390 6.390 10 C -0.029 4.029 11 O -0.281 6.281 12 C -0.011 4.011 13 C 0.009 3.991 14 C -0.021 4.021 15 N -0.393 5.393 16 C 0.327 3.673 17 O -0.408 6.408 18 C -0.155 4.155 19 C -0.035 4.035 20 C -0.564 4.564 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.540 5.540 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.186 1.186 28 C -0.023 4.023 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.152 20.627 -2.788 24.102 hybrid contribution -1.190 -0.062 -0.659 1.361 sum 10.962 20.565 -3.447 23.558 Atomic orbital electron populations 1.22307 0.93565 1.05040 1.05128 1.24882 0.92203 0.90081 0.70867 1.90390 1.71758 1.34567 1.34209 1.21792 0.81606 0.97278 1.00868 0.85678 1.22096 1.03657 1.01566 0.94567 1.47160 1.10714 1.46886 1.25989 1.20995 0.89082 0.78019 0.83249 1.90708 1.72190 1.50029 1.26060 1.22803 0.90620 0.93750 0.95726 1.88187 1.46320 1.61354 1.32246 1.22933 0.88207 1.01452 0.88520 1.22453 0.95031 0.94384 0.87222 1.23645 0.84717 0.93334 1.00433 1.50375 1.15334 1.20730 1.52867 1.21419 0.80755 0.84726 0.80441 1.90689 1.30611 1.75615 1.43845 1.21656 1.03478 0.90767 0.99597 1.19381 0.91395 0.95276 0.97481 1.21067 1.02704 1.01295 1.31347 0.90927 1.24961 0.98522 0.94649 0.94969 1.69906 1.31800 1.09985 1.42328 0.86813 0.82887 0.79653 0.80293 1.20228 1.21378 1.18578 1.23398 0.97106 0.85296 0.96542 0.88610 0.89816 0.88649 0.89855 0.90720 0.91065 0.85039 0.89202 0.91032 0.85748 0.87978 0.88893 0.89529 0.89648 0.95815 0.96291 0.92647 0.89778 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 10.24 36.01 0.37 -1.67 16 2 C 0.35 4.39 6.17 -29.03 -0.18 4.22 16 3 O -0.44 -6.77 14.61 -16.98 -0.25 -7.01 16 4 C 0.09 1.06 2.17 -69.08 -0.15 0.91 16 5 H 0.13 1.59 4.54 -51.93 -0.24 1.35 16 6 C -0.16 -1.92 9.08 37.16 0.34 -1.58 16 7 N -0.57 -6.21 2.52 -156.46 -0.39 -6.60 16 8 C 0.50 5.85 6.34 -11.42 -0.07 5.78 16 9 O -0.51 -7.80 12.85 -17.41 -0.22 -8.02 16 10 C 0.05 0.41 6.94 35.80 0.25 0.66 16 11 O -0.36 -2.78 10.84 -35.23 -0.38 -3.17 16 12 C 0.07 0.38 6.09 37.03 0.23 0.61 16 13 C 0.10 0.80 1.56 -135.76 -0.21 0.59 16 14 C 0.10 0.89 7.80 -3.15 -0.02 0.86 16 15 N -0.65 -7.73 2.30 -180.44 -0.42 -8.15 16 16 C 0.53 8.86 7.14 -10.99 -0.08 8.78 16 17 O -0.53 -10.81 16.71 5.56 0.09 -10.72 16 18 C -0.12 -2.10 5.39 -27.89 -0.15 -2.25 16 19 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 20 C -0.53 -14.54 9.66 -34.44 -0.33 -14.88 16 21 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 24 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 28 C 0.10 0.90 7.41 -3.16 -0.02 0.88 16 29 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 30 H 0.08 0.80 8.12 -51.93 -0.42 0.37 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.12 6.00 -51.93 -0.31 0.80 16 33 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.35 8.13 -51.93 -0.42 -0.08 16 38 H 0.12 0.40 7.86 -51.93 -0.41 -0.01 16 39 H 0.10 0.63 7.89 -51.92 -0.41 0.22 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 43 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 44 H 0.02 0.47 7.53 -51.93 -0.39 0.07 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 47 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -37.04 378.67 -7.14 -44.18 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.14 Total: -1.71 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.23 Total: 4.82 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.04 Total: -41.32 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.76 Total: -28.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.04 -7.14 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.007 kcal (2) G-P(sol) polarization free energy of solvation -37.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds