Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.53002 * 109.47628 * 239.99970 * 2 1 3 5 5 N 1.46504 * 109.46806 * 64.99599 * 4 2 1 6 6 C 1.36930 * 119.99600 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00584 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99993 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99947 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00085 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47230 * 90.00593 * 10 8 6 12 12 H 1.48507 * 109.47041 * 209.99920 * 10 8 6 13 13 H 1.48493 * 109.47214 * 330.00099 * 10 8 6 14 14 C 1.53005 * 109.47159 * 119.99545 * 2 1 3 15 15 N 1.46497 * 109.47343 * 295.00256 * 14 2 1 16 16 C 1.34776 * 119.99939 * 179.97438 * 15 14 2 17 17 O 1.21280 * 119.99923 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99815 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.47083 * 60.00009 * 18 16 15 20 20 C 1.52993 * 109.46941 * 299.99690 * 18 16 15 21 21 C 1.53000 * 109.46801 * 179.97438 * 18 16 15 22 22 C 1.50703 * 109.46912 * 184.99967 * 21 18 16 23 23 C 1.38258 * 119.99389 * 90.00076 * 22 21 18 24 24 C 1.38220 * 120.02596 * 179.97438 * 23 22 21 25 25 C 1.38232 * 120.01533 * 0.02562 * 24 23 22 26 26 C 1.38336 * 119.98784 * 359.97438 * 25 24 23 27 27 Cl 1.73591 * 120.01594 * 179.97438 * 26 25 24 28 28 C 1.38195 * 119.99049 * 269.72980 * 22 21 18 29 29 H 1.08996 * 109.47050 * 299.99748 * 1 2 3 30 30 H 1.08996 * 109.46929 * 60.00805 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47254 * 184.99759 * 4 2 1 33 33 H 1.09000 * 109.46791 * 304.99654 * 4 2 1 34 34 H 0.96997 * 119.99996 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00440 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46636 * 175.00312 * 14 2 1 37 37 H 1.09000 * 109.46735 * 55.00849 * 14 2 1 38 38 H 0.96998 * 119.99759 * 0.02562 * 15 14 2 39 39 H 1.08993 * 109.47639 * 300.00091 * 20 18 16 40 40 H 1.09004 * 109.47135 * 60.00236 * 20 18 16 41 41 H 1.09002 * 109.47179 * 179.97438 * 20 18 16 42 42 H 1.09002 * 109.47398 * 305.00045 * 21 18 16 43 43 H 1.09001 * 109.47194 * 65.00225 * 21 18 16 44 44 H 1.07998 * 119.98745 * 0.02562 * 23 22 21 45 45 H 1.08003 * 119.99349 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.00863 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00737 * 0.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 2.0012 -0.4208 -3.6855 7 1 2.5616 -1.3385 -3.7865 8 6 1.6344 0.2963 -4.8160 9 7 0.9519 1.4149 -4.6931 10 14 2.1107 -0.3256 -6.5118 11 1 1.0404 -1.2138 -7.0320 12 1 2.2867 0.8278 -7.4306 13 1 3.3836 -1.0849 -6.4211 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5964 0.3646 4.8934 19 1 0.5100 0.4427 4.9366 20 6 2.2064 1.7662 4.8294 21 6 2.1054 -0.3573 6.1427 22 6 1.6025 0.3529 7.3731 23 6 0.3940 -0.0124 7.9366 24 6 -0.0676 0.6381 9.0654 25 6 0.6786 1.6548 9.6313 26 6 1.8879 2.0209 9.0679 27 17 2.8253 3.2980 9.7776 28 6 2.3522 1.3654 7.9411 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2055 33 1 1.6056 -1.7198 -1.2951 34 1 1.1489 0.8594 -2.3517 35 1 0.6952 1.9159 -5.4830 36 1 3.1264 -0.7993 1.2056 37 1 1.6055 -1.7198 1.2952 38 1 1.1482 0.8591 2.3518 39 1 3.2927 1.6881 4.7862 40 1 1.8434 2.2802 3.9394 41 1 1.9173 2.3291 5.7169 42 1 1.7418 -1.3848 6.1421 43 1 3.1954 -0.3575 6.1433 44 1 -0.1892 -0.8070 7.4951 45 1 -1.0115 0.3520 9.5053 46 1 0.3176 2.1634 10.5130 47 1 3.2980 1.6480 7.5032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270611778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = -53.775398 kcal Electronic energy + Delta-G solvation = -25705.366267 eV Core-core repulsion = 21912.259680 eV Total energy + Delta-G solvation = -3793.106586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20923 -40.22547 -38.29692 -37.48759 -35.99579 -35.84771 -34.09338 -32.19935 -31.68327 -31.48420 -27.86043 -27.71532 -27.13605 -24.95244 -23.86936 -23.54394 -22.11870 -21.50237 -20.64122 -19.18436 -18.21955 -17.63787 -17.26738 -16.80138 -16.52827 -16.42842 -16.33197 -15.75842 -15.44661 -15.36249 -14.91356 -14.72933 -14.54531 -14.45507 -14.05377 -13.85110 -13.68974 -13.57489 -13.46657 -13.10257 -12.96167 -12.79571 -12.62733 -12.39876 -12.35599 -12.19308 -12.16508 -12.00487 -11.98218 -11.92099 -11.73095 -11.69787 -11.64225 -10.94533 -10.76176 -10.06213 -9.82341 -9.60442 -8.99327 -7.95624 -5.23758 0.20442 0.31276 1.18194 1.47854 1.49057 1.57623 1.66305 2.18831 2.56709 2.68696 3.38104 3.57011 3.73896 3.82377 3.87344 3.96698 4.01900 4.04724 4.10040 4.21513 4.34035 4.35272 4.43831 4.45815 4.55636 4.61955 4.72000 4.79238 4.85477 4.87375 4.90490 4.94631 5.03363 5.05781 5.13538 5.18924 5.26502 5.30244 5.35379 5.41996 5.43541 5.49847 5.51104 5.59819 5.88180 6.27143 6.57736 7.26820 7.34079 8.09360 8.33734 9.27738 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.001584 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.620850 B =17671.069970 C =17990.687161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.138 3.862 15 N -0.714 5.714 16 C 0.514 3.486 17 O -0.584 6.584 18 C -0.094 4.094 19 H 0.120 0.880 20 C -0.146 4.146 21 C -0.058 4.058 22 C -0.068 4.068 23 C -0.115 4.115 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.046 4.046 27 Cl -0.079 7.079 28 C -0.114 4.114 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.018 0.982 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.144 0.856 45 H 0.156 0.844 46 H 0.144 0.856 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 1.917 33.211 33.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.096 0.904 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.197 1.197 14 C 0.013 3.987 15 N -0.366 5.366 16 C 0.302 3.698 17 O -0.464 6.464 18 C -0.115 4.115 19 H 0.138 0.862 20 C -0.204 4.204 21 C -0.096 4.096 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.072 4.072 27 Cl -0.050 7.050 28 C -0.132 4.132 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.162 0.838 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.181 1.182 33.222 33.315 hybrid contribution 0.120 0.519 -1.273 1.380 sum -2.061 1.701 31.950 32.061 Atomic orbital electron populations 1.21724 0.93845 1.01921 1.01769 1.21329 0.97176 1.00011 0.92778 0.90377 1.20735 0.96472 0.94161 0.85751 1.42498 1.66820 1.27790 1.01309 1.19633 1.27955 1.05280 0.85114 0.90890 1.25534 1.01712 0.97871 1.01480 1.69796 1.45107 1.17763 1.29109 0.85154 0.78015 0.76821 0.79849 1.21382 1.22068 1.19652 1.21108 0.99374 0.95054 0.83133 1.45950 1.57413 1.28066 1.05173 1.21143 0.78272 0.85029 0.85373 1.90694 1.41873 1.26562 1.87321 1.21251 1.03662 0.96056 0.90546 0.86173 1.21881 1.01042 0.93590 1.03874 1.20339 1.01230 0.98564 0.89425 1.19771 0.94933 0.95682 0.96476 1.21452 0.95453 1.00276 0.96110 1.21416 1.00496 0.94712 0.95487 1.21316 0.93100 0.98480 1.01079 1.21077 0.94889 0.94142 0.97102 1.98377 1.72935 1.50250 1.83487 1.21064 1.00970 0.96250 0.94955 0.90437 0.93968 0.92988 0.96379 0.96126 0.79064 0.93956 0.92387 0.91872 0.74939 0.92611 0.90854 0.90333 0.90292 0.91066 0.83858 0.82668 0.83809 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.94 71.98 0.64 -3.05 16 2 C -0.09 -2.72 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 4 C 0.16 6.10 5.65 86.38 0.49 6.59 16 5 N -0.74 -37.08 5.33 -343.45 -1.83 -38.91 16 6 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 9 N -0.97 -58.52 13.06 21.65 0.28 -58.23 16 10 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C 0.14 3.52 5.06 86.38 0.44 3.96 16 15 N -0.71 -14.23 5.18 -463.05 -2.40 -16.63 16 16 C 0.51 11.08 7.15 87.66 0.63 11.71 16 17 O -0.58 -17.68 15.92 -3.03 -0.05 -17.73 16 18 C -0.09 -1.31 2.71 -11.54 -0.03 -1.34 16 19 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 20 C -0.15 -1.75 8.67 71.98 0.62 -1.13 16 21 C -0.06 -0.86 4.19 29.85 0.13 -0.73 16 22 C -0.07 -0.87 4.70 -19.87 -0.09 -0.97 16 23 C -0.11 -1.20 9.70 22.27 0.22 -0.98 16 24 C -0.10 -0.93 10.05 22.26 0.22 -0.70 16 25 C -0.12 -1.33 9.83 22.29 0.22 -1.11 16 26 C -0.05 -0.62 6.32 22.33 0.14 -0.48 16 27 Cl -0.08 -1.13 28.96 -2.72 -0.08 -1.21 16 28 C -0.11 -1.55 7.77 22.29 0.17 -1.38 16 29 H 0.08 1.56 7.18 -2.39 -0.02 1.54 16 30 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.38 19.71 6.85 -92.71 -0.64 19.08 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 6.12 7.07 -92.71 -0.66 5.46 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.75 7.57 -2.38 -0.02 0.73 16 41 H 0.08 0.85 6.28 -2.39 -0.01 0.83 16 42 H 0.08 1.30 7.90 -2.39 -0.02 1.28 16 43 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 44 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 46 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.13 1.73 8.05 -2.91 -0.02 1.71 16 Total: -1.00 -69.66 399.63 2.71 -66.94 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.32 Total: 26.83 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.07 Total: -9.15 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.94 Total: -113.78 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.05 Total: -17.73 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -69.66 2.71 -66.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270611778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.169 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds