Wall clock time and date at job start Tue Mar 31 2020 20:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47362 * 2 1 4 4 C 1.52997 * 109.47217 * 119.99898 * 2 1 3 5 5 N 1.46497 * 109.47495 * 295.00120 * 4 2 1 6 6 C 1.36935 * 120.00160 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00241 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99826 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99707 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46936 * 89.99778 * 10 8 6 12 12 H 1.48504 * 109.46783 * 209.99852 * 10 8 6 13 13 H 1.48495 * 109.47329 * 329.99503 * 10 8 6 14 14 C 1.52999 * 109.47324 * 240.00220 * 2 1 3 15 15 N 1.46501 * 109.46987 * 64.99474 * 14 2 1 16 16 C 1.34774 * 119.99977 * 179.97438 * 15 14 2 17 17 O 1.21289 * 119.99916 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00176 * 180.02562 * 16 15 14 19 19 H 1.08996 * 109.47157 * 300.00283 * 18 16 15 20 20 C 1.53001 * 109.46882 * 60.00564 * 18 16 15 21 21 C 1.52998 * 109.46979 * 180.02562 * 18 16 15 22 22 C 1.50706 * 109.47155 * 175.00106 * 21 18 16 23 23 C 1.38264 * 119.99067 * 89.99492 * 22 21 18 24 24 C 1.38224 * 120.02445 * 180.02562 * 23 22 21 25 25 C 1.38237 * 120.01313 * 0.26351 * 24 23 22 26 26 C 1.38338 * 119.98297 * 359.50743 * 25 24 23 27 27 Cl 1.73597 * 120.00852 * 180.25600 * 26 25 24 28 28 C 1.38189 * 119.99237 * 270.02386 * 22 21 18 29 29 H 1.09004 * 109.47643 * 59.99815 * 1 2 3 30 30 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47418 * 300.00022 * 1 2 3 32 32 H 1.09007 * 109.46866 * 54.99991 * 4 2 1 33 33 H 1.08997 * 109.47299 * 174.99531 * 4 2 1 34 34 H 0.97002 * 119.99889 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99878 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46829 * 305.00405 * 14 2 1 37 37 H 1.09001 * 109.47595 * 184.99899 * 14 2 1 38 38 H 0.97001 * 120.00375 * 0.02562 * 15 14 2 39 39 H 1.09002 * 109.47090 * 300.00104 * 20 18 16 40 40 H 1.08996 * 109.46713 * 59.99968 * 20 18 16 41 41 H 1.08999 * 109.46900 * 180.02562 * 20 18 16 42 42 H 1.08995 * 109.47349 * 55.00414 * 21 18 16 43 43 H 1.08997 * 109.47239 * 294.99973 * 21 18 16 44 44 H 1.07996 * 119.98741 * 0.02879 * 23 22 21 45 45 H 1.08002 * 119.99032 * 179.97438 * 24 23 22 46 46 H 1.07995 * 120.00242 * 179.74655 * 25 24 23 47 47 H 1.08000 * 120.00840 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0011 -0.4209 3.6855 7 1 2.5621 -1.3381 3.7865 8 6 1.6343 0.2963 4.8161 9 7 1.9698 -0.1419 6.0110 10 14 0.6645 1.8833 4.6415 11 1 -0.7891 1.5803 4.6660 12 1 0.9994 2.7941 5.7656 13 1 1.0124 2.5370 3.3544 14 6 2.0400 -0.7212 -1.2492 15 7 1.6523 0.0354 -2.4424 16 6 1.9963 -0.4129 -3.6659 17 8 2.6265 -1.4431 -3.7792 18 6 1.5981 0.3656 -4.8932 19 1 0.5118 0.4439 -4.9372 20 6 2.2082 1.7672 -4.8282 21 6 2.1080 -0.3556 -6.1424 22 6 1.6061 0.3551 -7.3730 23 6 2.3539 1.3721 -7.9370 24 6 1.8939 2.0248 -9.0653 25 6 0.6834 1.6647 -9.6272 26 6 -0.0629 0.6439 -9.0661 27 17 -1.5800 0.1866 -9.7751 28 6 0.3984 -0.0095 -7.9369 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2055 34 1 1.1482 0.8590 2.3518 35 1 1.7132 0.3591 6.8010 36 1 1.6053 -1.7198 -1.2952 37 1 3.1263 -0.7994 -1.2056 38 1 1.1487 0.8595 -2.3517 39 1 1.8446 2.2809 -3.9382 40 1 3.2944 1.6889 -4.7842 41 1 1.9197 2.3305 -5.7157 42 1 1.7443 -1.3831 -6.1427 43 1 3.1980 -0.3560 -6.1423 44 1 3.2977 1.6567 -7.4958 45 1 2.4783 2.8195 -9.5052 46 1 0.3223 2.1775 -10.5064 47 1 -0.1857 -0.8039 -7.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270611781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:10 Heat of formation + Delta-G solvation = -30.917437 kcal Electronic energy + Delta-G solvation = -25776.775041 eV Core-core repulsion = 21984.659651 eV Total energy + Delta-G solvation = -3792.115391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48167 -39.60417 -37.18611 -36.91177 -35.22551 -34.54454 -32.60852 -31.53869 -31.06419 -30.42120 -27.26434 -26.79114 -25.76902 -23.87539 -23.05175 -22.10732 -21.42728 -20.48620 -19.76427 -17.81748 -17.48125 -16.95597 -16.30200 -16.13048 -15.84265 -15.65413 -14.89098 -14.68646 -14.32963 -14.25614 -14.07056 -13.84526 -13.72802 -13.30469 -13.26155 -13.04931 -12.62028 -12.56818 -12.47077 -12.22701 -12.08887 -11.94748 -11.80477 -11.49537 -11.47399 -11.35849 -11.24038 -11.07355 -10.80215 -10.64876 -10.61318 -10.15501 -9.87462 -9.60102 -9.36341 -9.12696 -9.11778 -8.92208 -7.25420 -5.78524 -3.14243 0.66536 0.76395 1.67911 2.50778 2.97896 3.19119 3.33844 3.35997 3.42437 4.17027 4.30170 4.41536 4.51952 4.56491 4.58440 4.64756 4.79639 4.83997 4.88352 5.02606 5.06326 5.10926 5.20678 5.27089 5.34557 5.44025 5.48662 5.51769 5.63551 5.70694 5.72307 5.74394 5.76642 5.84386 5.84952 5.87288 6.05891 6.07263 6.20420 6.30977 6.37079 6.41927 6.63016 6.72394 7.37496 7.97802 8.09335 8.40354 9.19172 9.91239 10.10894 11.39907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.001695 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.876445 B =16510.556929 C =16760.800849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.725 5.725 16 C 0.515 3.485 17 O -0.541 6.541 18 C -0.105 4.105 19 H 0.098 0.902 20 C -0.149 4.149 21 C -0.063 4.063 22 C -0.064 4.064 23 C -0.110 4.110 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.032 4.032 27 Cl -0.072 7.072 28 C -0.108 4.108 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 5.863 -35.167 35.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.376 5.376 16 C 0.301 3.699 17 O -0.418 6.418 18 C -0.127 4.127 19 H 0.116 0.884 20 C -0.206 4.206 21 C -0.101 4.101 22 C -0.065 4.065 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.059 4.059 27 Cl -0.043 7.043 28 C -0.127 4.127 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.931 4.915 -35.101 35.564 hybrid contribution -1.159 1.564 0.063 1.948 sum -4.090 6.479 -35.037 35.865 Atomic orbital electron populations 1.21811 0.94783 1.02288 1.01184 1.21602 0.96611 1.00537 0.94627 0.90627 1.20553 0.97205 0.94251 0.84307 1.42681 1.67884 1.27092 1.02347 1.19070 1.29582 1.07044 0.81728 0.89165 1.24680 1.00815 0.98604 0.95108 1.69703 1.51252 1.40276 0.96923 0.86547 0.80442 0.84637 0.76880 1.21058 1.21702 1.20430 1.21401 1.00291 0.95303 0.82751 1.46077 1.57678 1.27855 1.06000 1.20531 0.79330 0.85506 0.84574 1.90718 1.39831 1.24515 1.86723 1.21272 1.02447 0.96314 0.92632 0.88366 1.21885 1.01535 0.94213 1.02969 1.20438 1.01951 0.98873 0.88812 1.19857 0.93818 0.96127 0.96651 1.21239 1.00203 0.95584 0.95820 1.21137 0.95444 0.99887 0.95925 1.21069 0.94959 0.96742 1.00766 1.20942 0.89331 0.98832 0.96753 1.98384 1.30632 1.91921 1.83409 1.21004 0.96382 1.00433 0.94836 0.93660 0.92332 0.91865 0.95108 0.95275 0.80650 0.93050 0.91157 0.91164 0.76585 0.91906 0.91783 0.91084 0.89623 0.89695 0.85192 0.85024 0.85070 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.94 37.15 0.33 -1.53 16 2 C -0.11 -1.58 2.46 -90.63 -0.22 -1.81 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 5 N -0.75 -17.51 5.13 -59.91 -0.31 -17.82 16 6 C -0.24 -6.90 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 10 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 14 C 0.13 1.57 5.06 -4.04 -0.02 1.55 16 15 N -0.72 -7.34 5.18 -60.29 -0.31 -7.65 16 16 C 0.51 5.59 7.15 -10.99 -0.08 5.51 16 17 O -0.54 -8.01 15.92 5.55 0.09 -7.93 16 18 C -0.11 -0.78 2.71 -91.77 -0.25 -1.02 16 19 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 20 C -0.15 -0.89 8.66 37.16 0.32 -0.56 16 21 C -0.06 -0.47 4.19 -27.88 -0.12 -0.59 16 22 C -0.06 -0.43 4.71 -104.63 -0.49 -0.93 16 23 C -0.11 -0.64 7.96 -39.58 -0.32 -0.96 16 24 C -0.11 -0.57 10.05 -39.59 -0.40 -0.96 16 25 C -0.12 -0.72 9.83 -39.55 -0.39 -1.11 16 26 C -0.03 -0.23 6.32 -39.50 -0.25 -0.48 16 27 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 28 C -0.11 -0.78 9.49 -39.55 -0.38 -1.15 16 29 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 32 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.36 8.08 4.71 -40.82 -0.19 7.89 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 3.16 7.07 -40.82 -0.29 2.87 16 39 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.37 6.27 -51.93 -0.33 0.05 16 42 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 43 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 44 H 0.13 0.58 8.04 -52.49 -0.42 0.15 16 45 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 46 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -33.42 396.47 -9.97 -43.39 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.44 Total: 5.54 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.53 Total: -8.05 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.16 Total: -53.99 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.42 -9.97 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270611781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.472 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds