Wall clock time and date at job start Tue Mar 31 2020 20:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47362 * 2 1 4 4 C 1.52997 * 109.47217 * 119.99898 * 2 1 3 5 5 N 1.46497 * 109.47495 * 295.00120 * 4 2 1 6 6 C 1.36935 * 120.00160 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00241 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99826 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99707 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46936 * 89.99778 * 10 8 6 12 12 H 1.48504 * 109.46783 * 209.99852 * 10 8 6 13 13 H 1.48495 * 109.47329 * 329.99503 * 10 8 6 14 14 C 1.52999 * 109.47324 * 240.00220 * 2 1 3 15 15 N 1.46501 * 109.46987 * 64.99474 * 14 2 1 16 16 C 1.34774 * 119.99977 * 179.97438 * 15 14 2 17 17 O 1.21289 * 119.99916 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00176 * 180.02562 * 16 15 14 19 19 H 1.08996 * 109.47157 * 300.00283 * 18 16 15 20 20 C 1.53001 * 109.46882 * 60.00564 * 18 16 15 21 21 C 1.52998 * 109.46979 * 180.02562 * 18 16 15 22 22 C 1.50706 * 109.47155 * 175.00106 * 21 18 16 23 23 C 1.38264 * 119.99067 * 89.99492 * 22 21 18 24 24 C 1.38224 * 120.02445 * 180.02562 * 23 22 21 25 25 C 1.38237 * 120.01313 * 0.26351 * 24 23 22 26 26 C 1.38338 * 119.98297 * 359.50743 * 25 24 23 27 27 Cl 1.73597 * 120.00852 * 180.25600 * 26 25 24 28 28 C 1.38189 * 119.99237 * 270.02386 * 22 21 18 29 29 H 1.09004 * 109.47643 * 59.99815 * 1 2 3 30 30 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47418 * 300.00022 * 1 2 3 32 32 H 1.09007 * 109.46866 * 54.99991 * 4 2 1 33 33 H 1.08997 * 109.47299 * 174.99531 * 4 2 1 34 34 H 0.97002 * 119.99889 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99878 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46829 * 305.00405 * 14 2 1 37 37 H 1.09001 * 109.47595 * 184.99899 * 14 2 1 38 38 H 0.97001 * 120.00375 * 0.02562 * 15 14 2 39 39 H 1.09002 * 109.47090 * 300.00104 * 20 18 16 40 40 H 1.08996 * 109.46713 * 59.99968 * 20 18 16 41 41 H 1.08999 * 109.46900 * 180.02562 * 20 18 16 42 42 H 1.08995 * 109.47349 * 55.00414 * 21 18 16 43 43 H 1.08997 * 109.47239 * 294.99973 * 21 18 16 44 44 H 1.07996 * 119.98741 * 0.02879 * 23 22 21 45 45 H 1.08002 * 119.99032 * 179.97438 * 24 23 22 46 46 H 1.07995 * 120.00242 * 179.74655 * 25 24 23 47 47 H 1.08000 * 120.00840 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0011 -0.4209 3.6855 7 1 2.5621 -1.3381 3.7865 8 6 1.6343 0.2963 4.8161 9 7 1.9698 -0.1419 6.0110 10 14 0.6645 1.8833 4.6415 11 1 -0.7891 1.5803 4.6660 12 1 0.9994 2.7941 5.7656 13 1 1.0124 2.5370 3.3544 14 6 2.0400 -0.7212 -1.2492 15 7 1.6523 0.0354 -2.4424 16 6 1.9963 -0.4129 -3.6659 17 8 2.6265 -1.4431 -3.7792 18 6 1.5981 0.3656 -4.8932 19 1 0.5118 0.4439 -4.9372 20 6 2.2082 1.7672 -4.8282 21 6 2.1080 -0.3556 -6.1424 22 6 1.6061 0.3551 -7.3730 23 6 2.3539 1.3721 -7.9370 24 6 1.8939 2.0248 -9.0653 25 6 0.6834 1.6647 -9.6272 26 6 -0.0629 0.6439 -9.0661 27 17 -1.5800 0.1866 -9.7751 28 6 0.3984 -0.0095 -7.9369 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2055 34 1 1.1482 0.8590 2.3518 35 1 1.7132 0.3591 6.8010 36 1 1.6053 -1.7198 -1.2952 37 1 3.1263 -0.7994 -1.2056 38 1 1.1487 0.8595 -2.3517 39 1 1.8446 2.2809 -3.9382 40 1 3.2944 1.6889 -4.7842 41 1 1.9197 2.3305 -5.7157 42 1 1.7443 -1.3831 -6.1427 43 1 3.1980 -0.3560 -6.1423 44 1 3.2977 1.6567 -7.4958 45 1 2.4783 2.8195 -9.5052 46 1 0.3223 2.1775 -10.5064 47 1 -0.1857 -0.8039 -7.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270611781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:09 Heat of formation + Delta-G solvation = -50.935457 kcal Electronic energy + Delta-G solvation = -25777.643088 eV Core-core repulsion = 21984.659651 eV Total energy + Delta-G solvation = -3792.983437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21651 -40.23399 -38.40029 -37.50992 -36.07234 -35.83812 -34.15368 -32.55372 -31.88732 -31.43197 -27.92334 -27.75336 -27.26338 -24.79369 -23.75317 -23.44826 -22.13713 -21.61470 -20.76259 -19.58464 -18.25547 -17.66981 -17.26172 -16.79575 -16.52608 -16.46159 -16.32213 -15.83718 -15.66193 -15.14723 -14.87809 -14.81395 -14.66286 -14.44129 -14.10604 -13.95057 -13.76900 -13.65813 -13.50374 -13.20213 -13.11847 -12.86786 -12.57631 -12.47269 -12.28198 -12.26194 -12.08508 -12.00114 -11.96379 -11.92518 -11.76675 -11.73228 -11.68124 -10.98711 -10.77509 -10.07268 -9.84249 -9.59966 -9.30384 -8.02870 -5.37062 0.19716 0.30712 1.17446 1.37179 1.42422 1.49680 1.65900 2.17539 2.48717 2.67918 3.28248 3.53423 3.58547 3.83320 3.85023 3.93613 3.98836 4.02381 4.08058 4.14155 4.20562 4.34767 4.40071 4.48673 4.52627 4.63343 4.69808 4.78359 4.82551 4.88673 4.93029 4.95212 5.01933 5.03172 5.09924 5.18448 5.27999 5.29088 5.31809 5.39936 5.41443 5.49052 5.59249 5.75183 5.87773 6.20629 6.57034 7.07691 7.26823 7.82613 8.03523 9.18703 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.001695 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.876445 B =16510.556929 C =16760.800849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.067 4.067 9 N -0.985 5.985 10 Si 0.959 3.041 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.136 3.864 15 N -0.713 5.713 16 C 0.513 3.487 17 O -0.585 6.585 18 C -0.095 4.095 19 H 0.114 0.886 20 C -0.145 4.145 21 C -0.058 4.058 22 C -0.068 4.068 23 C -0.111 4.111 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.045 4.045 27 Cl -0.080 7.080 28 C -0.119 4.119 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.368 0.632 35 H 0.258 0.742 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.145 0.855 45 H 0.157 0.843 46 H 0.144 0.856 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 8.738 -37.663 38.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.106 0.894 4 C 0.031 3.969 5 N -0.400 5.400 6 C -0.370 4.370 7 H 0.071 0.929 8 C -0.258 4.258 9 N -0.635 5.635 10 Si 0.785 3.215 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.011 3.989 15 N -0.366 5.366 16 C 0.301 3.699 17 O -0.465 6.465 18 C -0.116 4.116 19 H 0.132 0.868 20 C -0.203 4.203 21 C -0.096 4.096 22 C -0.068 4.068 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.072 4.072 27 Cl -0.052 7.052 28 C -0.137 4.137 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.163 0.837 45 H 0.174 0.826 46 H 0.162 0.838 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.881 7.812 -37.656 38.653 hybrid contribution -0.788 0.551 0.802 1.252 sum -4.670 8.362 -36.853 38.078 Atomic orbital electron populations 1.21808 0.93659 1.02306 1.02155 1.21386 0.97342 1.00403 0.92502 0.89417 1.20715 0.96924 0.94217 0.85001 1.42619 1.67815 1.27666 1.01860 1.19041 1.28245 1.05654 0.84054 0.92947 1.25586 1.02667 1.03002 0.94534 1.69903 1.53346 1.42309 0.97961 0.85357 0.78701 0.79480 0.77945 1.20208 1.22319 1.17062 1.21108 0.99515 0.95060 0.83184 1.45922 1.57474 1.28075 1.05098 1.21163 0.78270 0.85025 0.85438 1.90706 1.41866 1.26600 1.87328 1.21256 1.03403 0.96511 0.90477 0.86775 1.21892 1.01212 0.93083 1.04087 1.20338 1.01511 0.98262 0.89503 1.19769 0.93894 0.96627 0.96506 1.21455 1.00534 0.95019 0.95869 1.21436 0.95134 1.00071 0.95459 1.21320 0.95161 0.96360 1.01121 1.21074 0.89396 0.99581 0.97120 1.98377 1.31202 1.92065 1.83512 1.21060 0.96789 1.00712 0.95189 0.90144 0.92900 0.93365 0.95820 0.95917 0.79763 0.93317 0.92084 0.92260 0.74838 0.90864 0.92183 0.89881 0.91199 0.90289 0.83689 0.82559 0.83825 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.94 71.98 0.64 -2.64 16 2 C -0.10 -2.48 2.46 -10.80 -0.03 -2.51 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.16 5.81 5.65 86.38 0.49 6.30 16 5 N -0.75 -34.35 5.13 -343.46 -1.76 -36.12 16 6 C -0.24 -13.71 10.47 84.04 0.88 -12.83 16 7 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 8 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 9 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 10 Si 0.96 44.48 27.73 68.60 1.90 46.38 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 14 C 0.14 3.20 5.06 86.38 0.44 3.63 16 15 N -0.71 -12.73 5.18 -463.04 -2.40 -15.13 16 16 C 0.51 10.37 7.15 87.66 0.63 11.00 16 17 O -0.58 -17.20 15.92 -3.06 -0.05 -17.25 16 18 C -0.10 -1.20 2.71 -11.54 -0.03 -1.23 16 19 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.15 -1.29 8.66 71.98 0.62 -0.66 16 21 C -0.06 -0.82 4.19 29.85 0.12 -0.69 16 22 C -0.07 -0.81 4.71 -19.87 -0.09 -0.90 16 23 C -0.11 -1.00 7.96 22.27 0.18 -0.83 16 24 C -0.10 -0.81 10.05 22.27 0.22 -0.58 16 25 C -0.12 -1.24 9.83 22.29 0.22 -1.02 16 26 C -0.05 -0.60 6.32 22.33 0.14 -0.46 16 27 Cl -0.08 -1.13 28.96 -2.72 -0.08 -1.21 16 28 C -0.12 -1.59 9.49 22.29 0.21 -1.38 16 29 H 0.08 1.30 7.18 -2.39 -0.02 1.28 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.28 7.18 -2.39 -0.02 1.27 16 32 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.37 15.60 4.71 -92.71 -0.44 15.17 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.41 4.98 7.07 -92.71 -0.66 4.33 16 39 H 0.07 0.51 7.56 -2.39 -0.02 0.50 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.57 6.27 -2.39 -0.01 0.56 16 42 H 0.07 1.19 7.90 -2.39 -0.02 1.17 16 43 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 44 H 0.15 0.85 8.04 -2.91 -0.02 0.83 16 45 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 46 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.38 396.47 2.85 -71.53 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.18 Total: 23.12 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 5.11 Total: -8.26 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.86 Total: -114.32 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.05 Total: -17.25 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.38 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -74.38 2.85 -71.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270611781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds