Wall clock time and date at job start Tue Mar 31 2020 21:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46383 * 2 1 4 4 O 1.42903 * 109.47200 * 119.99704 * 2 1 3 5 5 C 1.50700 * 109.47295 * 239.99810 * 2 1 3 6 6 O 1.21279 * 120.00179 * 244.99497 * 5 2 1 7 7 N 1.34774 * 119.99496 * 65.00010 * 5 2 1 8 8 C 1.47710 * 134.43344 * 179.97438 * 7 5 2 9 9 C 1.53281 * 85.91319 * 155.87725 * 8 7 5 10 10 C 1.47712 * 134.44498 * 0.04570 * 7 5 2 11 11 C 1.53761 * 114.70699 * 267.36301 * 9 8 7 12 12 C 1.55458 * 102.01717 * 250.22113 * 11 9 8 13 13 C 1.55000 * 101.02904 * 326.41347 * 12 11 9 14 14 H 1.09002 * 110.38565 * 277.11386 * 13 12 11 15 15 C 1.50699 * 110.30502 * 155.00912 * 13 12 11 16 16 O 1.21285 * 119.99879 * 247.79864 * 15 13 12 17 17 N 1.34775 * 120.00193 * 67.79247 * 15 13 12 18 18 C 1.47580 * 134.49629 * 180.02562 * 17 15 13 19 19 C 1.53946 * 86.24073 * 155.42618 * 18 17 15 20 20 C 1.50699 * 113.74034 * 137.89610 * 19 18 17 21 21 H 1.08005 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99923 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47489 * 90.00188 * 24 22 20 26 26 H 1.48509 * 109.47303 * 209.99829 * 24 22 20 27 27 H 1.48498 * 109.47310 * 330.00046 * 24 22 20 28 28 C 1.47812 * 134.57995 * 359.95741 * 17 15 13 29 29 O 1.42528 * 115.51292 * 140.19046 * 9 8 7 30 30 H 1.09013 * 109.46629 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47775 * 299.99744 * 1 2 3 32 32 H 1.08994 * 109.47501 * 60.00716 * 1 2 3 33 33 H 0.96693 * 114.00048 * 60.00190 * 4 2 1 34 34 H 1.09001 * 113.80178 * 41.63258 * 8 7 5 35 35 H 1.09002 * 113.91154 * 270.13929 * 8 7 5 36 36 H 1.09000 * 113.80157 * 89.87042 * 10 7 5 37 37 H 1.08999 * 113.79484 * 318.37122 * 10 7 5 38 38 H 1.09002 * 110.92634 * 8.40202 * 11 9 8 39 39 H 1.08997 * 110.92539 * 132.01087 * 11 9 8 40 40 H 1.08995 * 111.11089 * 208.46905 * 12 11 9 41 41 H 1.09003 * 111.10768 * 84.35085 * 12 11 9 42 42 H 1.09002 * 113.76914 * 41.06930 * 18 17 15 43 43 H 1.09000 * 113.77064 * 269.78402 * 18 17 15 44 44 H 1.08995 * 113.74143 * 269.20333 * 19 18 17 45 45 H 0.97001 * 119.99548 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.67199 * 90.26545 * 28 17 15 47 47 H 1.08996 * 113.93703 * 318.91196 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 8 2.6531 -1.7466 -1.1214 7 7 1.7919 -0.1942 -2.4519 8 6 2.1224 -0.6052 -3.8317 9 6 0.9094 0.2312 -4.2544 10 6 1.0936 1.0097 -2.9468 11 6 -0.4087 -0.5540 -4.3559 12 6 -0.6529 -0.5795 -5.8909 13 6 -0.0640 0.7923 -6.3077 14 1 -0.7975 1.5835 -6.1519 15 6 0.3691 0.7589 -7.7507 16 8 1.5470 0.8261 -8.0320 17 7 -0.5523 0.6541 -8.7286 18 6 -0.4946 0.5935 -10.2021 19 6 -1.8485 -0.1351 -10.1241 20 6 -2.8409 0.3159 -11.1647 21 1 -2.5689 1.0845 -11.8731 22 6 -4.0964 -0.2519 -11.2117 23 7 -4.9623 0.1414 -12.1201 24 14 -4.5676 -1.5796 -9.9851 25 1 -5.1688 -0.9509 -8.7816 26 1 -5.5527 -2.5008 -10.6067 27 1 -3.3559 -2.3427 -9.5919 28 6 -2.0267 0.5524 -8.7584 29 8 1.0735 0.9902 -5.4495 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.7211 -1.5951 1.2330 34 1 2.0047 -1.6736 -4.0126 35 1 3.0737 -0.2145 -4.1932 36 1 1.7377 1.8838 -3.0423 37 1 0.1599 1.2218 -2.4259 38 1 -0.2913 -1.5642 -3.9636 39 1 -1.2145 -0.0301 -3.8417 40 1 -1.7174 -0.6352 -6.1182 41 1 -0.1096 -1.3991 -6.3613 42 1 0.3164 -0.0262 -10.5848 43 1 -0.5480 1.5695 -10.6844 44 1 -1.7602 -1.2196 -10.0611 45 1 -5.8458 -0.2579 -12.1529 46 1 -2.5308 1.5171 -8.8146 47 1 -2.4406 -0.0997 -7.9893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270861262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:48 Heat of formation + Delta-G solvation = -83.348485 kcal Electronic energy + Delta-G solvation = -29878.710664 eV Core-core repulsion = 25643.612528 eV Total energy + Delta-G solvation = -4235.098136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52549 -40.06362 -39.27137 -37.67416 -36.86928 -36.43453 -32.83481 -32.50118 -32.01884 -30.37982 -29.29570 -27.08381 -26.84271 -25.43260 -25.05530 -24.22445 -22.70748 -20.92274 -20.16034 -19.55963 -18.54510 -18.23416 -17.50044 -17.27956 -17.06898 -16.56307 -16.25285 -15.85249 -15.66367 -15.38524 -15.07699 -14.52099 -14.31454 -14.09020 -13.83341 -13.65115 -13.48730 -13.27906 -13.12684 -13.03861 -12.78978 -12.56677 -12.27464 -12.20591 -12.03121 -11.95064 -11.89087 -11.77126 -11.64289 -11.27280 -11.16643 -11.05469 -10.76878 -10.17265 -10.08028 -9.97301 -9.85694 -9.45736 -9.20009 -9.10800 -8.77398 -8.16158 -6.28747 -4.32097 2.09243 2.19776 2.77937 3.00029 3.10175 3.20006 3.22067 3.65273 3.69519 3.76907 3.83795 4.10812 4.16116 4.21162 4.37291 4.46673 4.56013 4.70736 4.75304 4.90170 4.93887 4.96039 5.01028 5.08437 5.15270 5.20830 5.26756 5.31693 5.37926 5.40265 5.50897 5.53994 5.65608 5.74238 5.87610 6.00347 6.07508 6.16289 6.26320 6.39376 6.66945 6.97782 7.07506 7.19069 7.45126 7.63855 8.15366 8.29278 8.49284 8.74948 9.31096 10.83325 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002414 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.075965 B =11595.139082 C =12395.091072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.124 0.876 4 O -0.539 6.539 5 C 0.511 3.489 6 O -0.532 6.532 7 N -0.637 5.637 8 C 0.107 3.893 9 C 0.072 3.928 10 C 0.095 3.905 11 C -0.125 4.125 12 C -0.144 4.144 13 C 0.069 3.931 14 H 0.100 0.900 15 C 0.526 3.474 16 O -0.540 6.540 17 N -0.638 5.638 18 C 0.120 3.880 19 C -0.011 4.011 20 C -0.514 4.514 21 H 0.080 0.920 22 C 0.077 3.923 23 N -0.891 5.891 24 Si 0.872 3.128 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.262 1.262 28 C 0.084 3.916 29 O -0.327 6.327 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.385 0.615 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.267 0.733 46 H 0.089 0.911 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 0.629 22.277 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.033 3.967 3 H 0.142 0.858 4 O -0.344 6.344 5 C 0.300 3.700 6 O -0.409 6.409 7 N -0.376 5.376 8 C -0.016 4.016 9 C 0.030 3.970 10 C -0.028 4.028 11 C -0.163 4.163 12 C -0.182 4.182 13 C 0.008 3.992 14 H 0.117 0.883 15 C 0.314 3.686 16 O -0.418 6.418 17 N -0.374 5.374 18 C -0.001 4.001 19 C -0.030 4.030 20 C -0.552 4.552 21 H 0.098 0.902 22 C -0.127 4.127 23 N -0.528 5.528 24 Si 0.699 3.301 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.187 1.187 28 C -0.039 4.039 29 O -0.243 6.243 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.759 0.713 22.553 23.555 hybrid contribution -0.848 -1.107 0.466 1.470 sum 5.911 -0.394 23.019 23.769 Atomic orbital electron populations 1.22510 0.93836 1.03759 1.04039 1.21755 0.94654 0.97206 0.83093 0.85823 1.86602 1.77573 1.30010 1.40250 1.21335 0.79451 0.85669 0.83543 1.90743 1.40615 1.24034 1.85481 1.49713 1.56474 1.26231 1.05145 1.23505 0.98900 1.00901 0.78248 1.23479 0.95850 0.92021 0.85600 1.23746 0.97605 0.89956 0.91488 1.22828 0.95236 1.01493 0.96731 1.23293 1.03311 0.96695 0.94884 1.22874 0.88341 0.98611 0.89388 0.88288 1.19895 0.85545 0.77165 0.85989 1.90685 1.17039 1.50493 1.83599 1.50338 1.08457 1.70926 1.07682 1.23300 0.98855 1.00663 0.77275 1.21046 0.93059 0.96423 0.92496 1.20824 0.96425 1.22916 1.15025 0.90169 1.25014 0.96358 0.96204 0.95125 1.69890 1.06515 1.42556 1.33800 0.86908 0.78866 0.82517 0.81793 1.19929 1.21145 1.18690 1.24133 0.77976 1.01329 1.00452 1.88489 1.41658 1.66662 1.27539 0.91516 0.90224 0.90684 0.76630 0.89284 0.88397 0.88135 0.88902 0.89165 0.89302 0.88411 0.89449 0.91542 0.89972 0.91797 0.92307 0.89311 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.45 37.16 0.35 -0.52 16 2 C 0.10 0.70 3.78 -27.88 -0.11 0.59 16 3 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 4 O -0.54 -4.75 12.99 -55.09 -0.72 -5.47 16 5 C 0.51 5.31 7.40 -10.99 -0.08 5.23 16 6 O -0.53 -7.73 17.05 -14.30 -0.24 -7.97 16 7 N -0.64 -5.80 3.56 -181.70 -0.65 -6.44 16 8 C 0.11 1.09 8.27 -3.24 -0.03 1.06 16 9 C 0.07 0.68 1.68 -90.04 -0.15 0.52 16 10 C 0.09 0.66 7.78 -3.23 -0.03 0.63 16 11 C -0.13 -0.99 6.32 -25.03 -0.16 -1.15 16 12 C -0.14 -1.50 6.33 -24.37 -0.15 -1.66 16 13 C 0.07 0.89 3.63 -26.83 -0.10 0.79 16 14 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.53 9.19 7.40 -10.99 -0.08 9.11 16 16 O -0.54 -11.51 17.28 -13.75 -0.24 -11.74 16 17 N -0.64 -11.22 3.62 -177.44 -0.64 -11.86 16 18 C 0.12 2.25 8.38 -2.97 -0.02 2.22 16 19 C -0.01 -0.22 2.90 -90.84 -0.26 -0.48 16 20 C -0.51 -12.60 9.32 -34.44 -0.32 -12.92 16 21 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 22 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.89 -24.74 13.96 55.43 0.77 -23.96 16 24 Si 0.87 18.68 27.17 -169.99 -4.62 14.07 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.26 -5.32 6.25 56.52 0.35 -4.97 16 28 C 0.08 1.43 7.37 -2.86 -0.02 1.41 16 29 O -0.33 -4.27 10.39 -54.53 -0.57 -4.84 16 30 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.28 5.59 -51.93 -0.29 -0.01 16 33 H 0.38 2.49 8.79 45.56 0.40 2.89 16 34 H 0.09 0.92 7.98 -51.93 -0.41 0.50 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.41 5.87 -51.93 -0.30 0.10 16 38 H 0.09 0.68 7.83 -51.93 -0.41 0.27 16 39 H 0.09 0.52 8.01 -51.93 -0.42 0.11 16 40 H 0.10 0.93 6.97 -51.93 -0.36 0.56 16 41 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 44 H 0.06 1.31 6.58 -51.93 -0.34 0.97 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 47 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -33.56 383.96 -8.68 -42.24 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.31 Total: 3.49 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.26 Total: 6.71 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.52 Total: -42.27 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.76 Total: -30.02 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.62 Total: 14.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.56 -8.68 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270861262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.112 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds