Wall clock time and date at job start Tue Mar 31 2020 21:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46383 * 2 1 4 4 O 1.42903 * 109.47200 * 119.99704 * 2 1 3 5 5 C 1.50700 * 109.47295 * 239.99810 * 2 1 3 6 6 O 1.21279 * 120.00179 * 244.99497 * 5 2 1 7 7 N 1.34774 * 119.99496 * 65.00010 * 5 2 1 8 8 C 1.47710 * 134.43344 * 179.97438 * 7 5 2 9 9 C 1.53281 * 85.91319 * 155.87725 * 8 7 5 10 10 C 1.47712 * 134.44498 * 0.04570 * 7 5 2 11 11 C 1.53761 * 114.70699 * 267.36301 * 9 8 7 12 12 C 1.55458 * 102.01717 * 250.22113 * 11 9 8 13 13 C 1.55000 * 101.02904 * 326.41347 * 12 11 9 14 14 H 1.09002 * 110.38565 * 277.11386 * 13 12 11 15 15 C 1.50699 * 110.30502 * 155.00912 * 13 12 11 16 16 O 1.21285 * 119.99879 * 247.79864 * 15 13 12 17 17 N 1.34775 * 120.00193 * 67.79247 * 15 13 12 18 18 C 1.47580 * 134.49629 * 180.02562 * 17 15 13 19 19 C 1.53946 * 86.24073 * 155.42618 * 18 17 15 20 20 C 1.50699 * 113.74034 * 137.89610 * 19 18 17 21 21 H 1.08005 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99923 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47489 * 90.00188 * 24 22 20 26 26 H 1.48509 * 109.47303 * 209.99829 * 24 22 20 27 27 H 1.48498 * 109.47310 * 330.00046 * 24 22 20 28 28 C 1.47812 * 134.57995 * 359.95741 * 17 15 13 29 29 O 1.42528 * 115.51292 * 140.19046 * 9 8 7 30 30 H 1.09013 * 109.46629 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47775 * 299.99744 * 1 2 3 32 32 H 1.08994 * 109.47501 * 60.00716 * 1 2 3 33 33 H 0.96693 * 114.00048 * 60.00190 * 4 2 1 34 34 H 1.09001 * 113.80178 * 41.63258 * 8 7 5 35 35 H 1.09002 * 113.91154 * 270.13929 * 8 7 5 36 36 H 1.09000 * 113.80157 * 89.87042 * 10 7 5 37 37 H 1.08999 * 113.79484 * 318.37122 * 10 7 5 38 38 H 1.09002 * 110.92634 * 8.40202 * 11 9 8 39 39 H 1.08997 * 110.92539 * 132.01087 * 11 9 8 40 40 H 1.08995 * 111.11089 * 208.46905 * 12 11 9 41 41 H 1.09003 * 111.10768 * 84.35085 * 12 11 9 42 42 H 1.09002 * 113.76914 * 41.06930 * 18 17 15 43 43 H 1.09000 * 113.77064 * 269.78402 * 18 17 15 44 44 H 1.08995 * 113.74143 * 269.20333 * 19 18 17 45 45 H 0.97001 * 119.99548 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.67199 * 90.26545 * 28 17 15 47 47 H 1.08996 * 113.93703 * 318.91196 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 8 2.6531 -1.7466 -1.1214 7 7 1.7919 -0.1942 -2.4519 8 6 2.1224 -0.6052 -3.8317 9 6 0.9094 0.2312 -4.2544 10 6 1.0936 1.0097 -2.9468 11 6 -0.4087 -0.5540 -4.3559 12 6 -0.6529 -0.5795 -5.8909 13 6 -0.0640 0.7923 -6.3077 14 1 -0.7975 1.5835 -6.1519 15 6 0.3691 0.7589 -7.7507 16 8 1.5470 0.8261 -8.0320 17 7 -0.5523 0.6541 -8.7286 18 6 -0.4946 0.5935 -10.2021 19 6 -1.8485 -0.1351 -10.1241 20 6 -2.8409 0.3159 -11.1647 21 1 -2.5689 1.0845 -11.8731 22 6 -4.0964 -0.2519 -11.2117 23 7 -4.9623 0.1414 -12.1201 24 14 -4.5676 -1.5796 -9.9851 25 1 -5.1688 -0.9509 -8.7816 26 1 -5.5527 -2.5008 -10.6067 27 1 -3.3559 -2.3427 -9.5919 28 6 -2.0267 0.5524 -8.7584 29 8 1.0735 0.9902 -5.4495 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.7211 -1.5951 1.2330 34 1 2.0047 -1.6736 -4.0126 35 1 3.0737 -0.2145 -4.1932 36 1 1.7377 1.8838 -3.0423 37 1 0.1599 1.2218 -2.4259 38 1 -0.2913 -1.5642 -3.9636 39 1 -1.2145 -0.0301 -3.8417 40 1 -1.7174 -0.6352 -6.1182 41 1 -0.1096 -1.3991 -6.3613 42 1 0.3164 -0.0262 -10.5848 43 1 -0.5480 1.5695 -10.6844 44 1 -1.7602 -1.2196 -10.0611 45 1 -5.8458 -0.2579 -12.1529 46 1 -2.5308 1.5171 -8.8146 47 1 -2.4406 -0.0997 -7.9893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270861262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:48 Heat of formation + Delta-G solvation = -108.361990 kcal Electronic energy + Delta-G solvation = -29879.795331 eV Core-core repulsion = 25643.612528 eV Total energy + Delta-G solvation = -4236.182803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30222 -41.19671 -40.31099 -38.84443 -37.84558 -37.31070 -34.64116 -33.42445 -32.64363 -31.56649 -30.34429 -28.18478 -27.49529 -26.88683 -26.44700 -24.84617 -23.56663 -21.91877 -21.42934 -20.25097 -19.91081 -19.16645 -18.89920 -18.32979 -17.98258 -17.60146 -17.17435 -16.84127 -16.63307 -16.31919 -16.11845 -15.72701 -15.32756 -15.10619 -14.85819 -14.75942 -14.52476 -14.47886 -14.16562 -13.89786 -13.53073 -13.46164 -13.38323 -13.34382 -13.04518 -12.91893 -12.79368 -12.68537 -12.56149 -12.39504 -12.36368 -11.90176 -11.79344 -11.76764 -11.55746 -11.26541 -10.97336 -10.71993 -10.68424 -10.41100 -9.94073 -9.63148 -8.23221 -6.31987 1.34524 1.40227 1.44026 1.49810 1.55752 1.57796 1.79970 2.42689 2.71424 3.07348 3.07939 3.13762 3.24064 3.29439 3.47457 3.58690 3.92106 3.94409 4.04018 4.05724 4.09590 4.19095 4.26444 4.33512 4.39107 4.44403 4.45831 4.51208 4.55264 4.59656 4.66089 4.71729 4.79585 4.81003 4.82813 4.90009 4.93077 4.95419 5.05191 5.21638 5.43238 5.63583 5.82275 6.31141 6.41454 6.55126 6.72723 6.82826 6.89701 7.10946 7.35400 8.92382 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002414 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.075965 B =11595.139082 C =12395.091072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.140 0.860 4 O -0.558 6.558 5 C 0.506 3.494 6 O -0.585 6.585 7 N -0.632 5.632 8 C 0.092 3.908 9 C 0.068 3.932 10 C 0.106 3.894 11 C -0.114 4.114 12 C -0.143 4.143 13 C 0.073 3.927 14 H 0.128 0.872 15 C 0.520 3.480 16 O -0.588 6.588 17 N -0.636 5.636 18 C 0.115 3.885 19 C -0.017 4.017 20 C -0.515 4.515 21 H 0.037 0.963 22 C 0.017 3.983 23 N -0.947 5.947 24 Si 0.938 3.062 25 H -0.246 1.246 26 H -0.297 1.297 27 H -0.240 1.240 28 C 0.099 3.901 29 O -0.352 6.352 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.392 0.608 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.267 0.733 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 0.638 25.951 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.037 3.963 3 H 0.157 0.843 4 O -0.364 6.364 5 C 0.297 3.703 6 O -0.465 6.465 7 N -0.369 5.369 8 C -0.031 4.031 9 C 0.027 3.973 10 C -0.016 4.016 11 C -0.151 4.151 12 C -0.181 4.181 13 C 0.013 3.987 14 H 0.146 0.854 15 C 0.311 3.689 16 O -0.469 6.469 17 N -0.371 5.371 18 C -0.007 4.007 19 C -0.036 4.036 20 C -0.553 4.553 21 H 0.055 0.945 22 C -0.181 4.181 23 N -0.586 5.586 24 Si 0.760 3.240 25 H -0.170 1.170 26 H -0.224 1.224 27 H -0.164 1.164 28 C -0.022 4.022 29 O -0.269 6.269 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.242 0.758 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.055 0.755 26.248 26.741 hybrid contribution -0.179 -1.054 -0.824 1.350 sum 4.876 -0.299 25.424 25.889 Atomic orbital electron populations 1.22479 0.91291 1.04121 1.05441 1.21951 0.96490 0.97007 0.80844 0.84307 1.86567 1.78241 1.30773 1.40841 1.22050 0.78592 0.85119 0.84516 1.90715 1.43057 1.26451 1.86251 1.49744 1.55975 1.26816 1.04380 1.23539 0.99208 1.00787 0.79578 1.23679 0.95997 0.92306 0.85289 1.23885 0.99068 0.88836 0.89789 1.22869 0.95076 1.02039 0.95088 1.23327 1.03915 0.94321 0.96538 1.22942 0.88662 1.01150 0.85968 0.85421 1.20849 0.84688 0.75552 0.87856 1.90661 1.19072 1.52535 1.84626 1.50284 1.08893 1.70854 1.07024 1.23196 0.98302 1.00280 0.78892 1.20969 0.92510 0.96777 0.93367 1.20983 0.97473 1.21594 1.15213 0.94481 1.25926 0.96166 0.98816 0.97208 1.70061 1.07166 1.44780 1.36572 0.85863 0.79028 0.79238 0.79828 1.17031 1.22412 1.16353 1.23945 0.77669 1.01661 0.98964 1.88475 1.42371 1.67260 1.28822 0.91721 0.88982 0.88991 0.75801 0.90068 0.89966 0.87654 0.85007 0.88705 0.85757 0.86382 0.91296 0.91607 0.90578 0.91431 0.92423 0.89052 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 9.45 71.98 0.68 -0.27 16 2 C 0.10 1.19 3.78 29.85 0.11 1.30 16 3 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 4 O -0.56 -8.99 12.99 -129.99 -1.69 -10.68 16 5 C 0.51 9.75 7.40 87.66 0.65 10.40 16 6 O -0.58 -17.00 17.05 15.96 0.27 -16.72 16 7 N -0.63 -10.14 3.56 -852.48 -3.03 -13.18 16 8 C 0.09 1.81 8.27 86.24 0.71 2.52 16 9 C 0.07 1.08 1.68 -10.31 -0.02 1.06 16 10 C 0.11 1.05 7.78 86.24 0.67 1.72 16 11 C -0.11 -1.27 6.32 31.70 0.20 -1.07 16 12 C -0.14 -2.40 6.33 32.12 0.20 -2.20 16 13 C 0.07 1.65 3.63 30.53 0.11 1.76 16 14 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.52 17.42 7.40 87.66 0.65 18.07 16 16 O -0.59 -25.15 17.28 15.41 0.27 -24.88 16 17 N -0.64 -21.25 3.62 -833.68 -3.02 -24.27 16 18 C 0.12 4.32 8.38 86.48 0.72 5.04 16 19 C -0.02 -0.66 2.90 -10.89 -0.03 -0.69 16 20 C -0.51 -25.59 9.32 25.60 0.24 -25.35 16 21 H 0.04 2.10 8.06 -2.91 -0.02 2.08 16 22 C 0.02 0.87 5.47 84.65 0.46 1.34 16 23 N -0.95 -53.91 13.96 21.45 0.30 -53.61 16 24 Si 0.94 36.86 27.17 68.60 1.86 38.73 16 25 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 26 H -0.30 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.24 -8.51 6.25 99.48 0.62 -7.89 16 28 C 0.10 3.09 7.37 86.43 0.64 3.73 16 29 O -0.35 -8.42 10.39 -130.52 -1.36 -9.77 16 30 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.17 5.59 -2.39 -0.01 0.16 16 33 H 0.39 4.74 8.79 -74.06 -0.65 4.09 16 34 H 0.08 1.68 7.98 -2.39 -0.02 1.66 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.13 0.32 5.87 -2.39 -0.01 0.31 16 38 H 0.09 1.04 7.83 -2.39 -0.02 1.02 16 39 H 0.12 0.58 8.01 -2.39 -0.02 0.56 16 40 H 0.12 1.52 6.97 -2.39 -0.02 1.50 16 41 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.91 8.09 -2.39 -0.02 2.89 16 44 H 0.07 2.62 6.58 -2.39 -0.02 2.61 16 45 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.09 2.85 8.09 -2.39 -0.02 2.83 16 47 H 0.09 2.32 6.77 -2.39 -0.02 2.30 16 Total: -1.00 -78.04 383.96 -0.13 -78.17 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.26 Total: 18.84 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.00 Total: 17.38 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -5.75 Total: -91.05 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -2.51 Total: -62.06 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 1.86 Total: 38.73 kcal Total: -78.04 -0.13 -78.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270861262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.189 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds