Wall clock time and date at job start Tue Mar 31 2020 21:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47065 * 2 1 4 4 C 1.52994 * 109.47524 * 119.99941 * 2 1 3 5 5 N 1.46490 * 109.47569 * 171.14637 * 4 2 1 6 6 C 1.36940 * 120.00503 * 178.51230 * 5 4 2 7 7 H 1.08001 * 119.99399 * 3.28031 * 6 5 4 8 8 C 1.38811 * 120.00405 * 183.28623 * 6 5 4 9 9 N 1.31620 * 120.00059 * 182.36420 * 8 6 5 10 10 Si 1.86800 * 119.99887 * 2.36597 * 8 6 5 11 11 H 1.48495 * 109.47281 * 92.96067 * 10 8 6 12 12 H 1.48500 * 109.47172 * 212.96456 * 10 8 6 13 13 H 1.48506 * 109.47119 * 332.96104 * 10 8 6 14 14 N 1.46503 * 109.47077 * 240.00321 * 2 1 3 15 15 C 1.46496 * 119.99959 * 291.11221 * 14 2 1 16 16 C 1.34776 * 120.00036 * 111.10969 * 14 2 1 17 17 O 1.21279 * 120.00028 * 173.12277 * 16 14 2 18 18 C 1.50699 * 120.00026 * 353.40335 * 16 14 2 19 19 C 1.52997 * 109.54568 * 72.02520 * 18 16 14 20 20 F 1.39894 * 109.47274 * 76.36348 * 19 18 16 21 21 F 1.39901 * 109.47081 * 196.36417 * 19 18 16 22 22 F 1.39903 * 109.47159 * 316.35917 * 19 18 16 23 23 C 1.53182 * 109.54321 * 311.75682 * 18 16 14 24 24 C 1.53101 * 109.15939 * 297.11548 * 23 18 16 25 25 O 1.42904 * 109.41371 * 302.38859 * 24 23 18 26 26 C 1.42905 * 114.09813 * 61.16240 * 25 24 23 27 27 C 1.53093 * 109.41202 * 298.84050 * 26 25 24 28 28 H 1.08992 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46796 * 300.00028 * 1 2 3 30 30 H 1.08997 * 109.46848 * 59.99757 * 1 2 3 31 31 H 1.08998 * 109.47396 * 291.15582 * 4 2 1 32 32 H 1.09007 * 109.46620 * 51.14474 * 4 2 1 33 33 H 0.97002 * 120.00160 * 358.51369 * 5 4 2 34 34 H 0.97002 * 119.99636 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47032 * 274.78460 * 15 14 2 36 36 H 1.09002 * 109.46928 * 34.78616 * 15 14 2 37 37 H 1.08999 * 109.47211 * 154.78777 * 15 14 2 38 38 H 1.08999 * 109.52399 * 57.01987 * 23 18 16 39 39 H 1.09000 * 109.52524 * 177.21131 * 23 18 16 40 40 H 1.09003 * 109.47591 * 182.40699 * 24 23 18 41 41 H 1.08994 * 109.49125 * 62.38443 * 24 23 18 42 42 H 1.08991 * 109.47851 * 178.85401 * 26 25 24 43 43 H 1.09000 * 109.48975 * 58.82739 * 26 25 24 44 44 H 1.08996 * 109.52203 * 297.69926 * 27 26 25 45 45 H 1.08999 * 109.51824 * 177.51432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4895 -0.9080 1.1476 6 6 4.1760 -1.5075 2.1697 7 1 3.6422 -1.8902 3.0271 8 6 5.5577 -1.6232 2.1039 9 7 6.2129 -2.2406 3.0641 10 14 6.4872 -0.9027 0.6526 11 1 6.9299 0.4756 0.9833 12 1 7.6731 -1.7459 0.3563 13 1 5.5973 -0.8650 -0.5357 14 7 2.0184 -0.6906 -1.1962 15 6 1.8317 -2.1370 -1.3345 16 6 2.6393 0.0049 -2.1695 17 8 3.1533 -0.5801 -3.0993 18 6 2.7005 1.5090 -2.0992 19 6 3.6745 1.9307 -0.9973 20 9 4.9885 1.7610 -1.4463 21 9 3.4614 3.2756 -0.6762 22 9 3.4640 1.1412 0.1384 23 6 1.3062 2.0648 -1.7935 24 6 0.3585 1.7030 -2.9402 25 8 0.8755 2.2244 -4.1662 26 6 2.1566 1.7041 -4.5273 27 6 3.1764 2.0659 -3.4444 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8116 -0.1243 2.1321 32 1 1.5534 -1.6930 1.3318 33 1 3.9631 -0.6071 0.3564 34 1 7.1784 -2.3217 3.0178 35 1 2.6468 -2.6581 -0.8325 36 1 0.8827 -2.4257 -0.8825 37 1 1.8266 -2.4033 -2.3915 38 1 0.9365 1.6305 -0.8646 39 1 1.3600 3.1489 -1.6937 40 1 -0.6248 2.1326 -2.7484 41 1 0.2734 0.6188 -3.0134 42 1 2.4685 2.1344 -5.4789 43 1 2.0954 0.6199 -4.6214 44 1 3.2681 3.1500 -3.3780 45 1 4.1443 1.6324 -3.6962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270968885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:38 Heat of formation + Delta-G solvation = -140.957381 kcal Electronic energy + Delta-G solvation = -34918.031240 eV Core-core repulsion = 30138.578255 eV Total energy + Delta-G solvation = -4779.452986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.46808 -47.99104 -47.65093 -41.27223 -38.57968 -37.19343 -34.77072 -34.03240 -31.87944 -31.54550 -30.46013 -28.14280 -26.94143 -26.10650 -24.12565 -23.62382 -22.87316 -21.97813 -21.01951 -19.08237 -18.68737 -18.61043 -18.42450 -17.60401 -16.71302 -16.33936 -16.14623 -15.66169 -15.32397 -14.97782 -14.81346 -14.64178 -14.40816 -14.29283 -14.19925 -13.95942 -13.83449 -13.80199 -13.61941 -13.16717 -13.03264 -12.79316 -12.58225 -12.47587 -12.33025 -12.13984 -11.99728 -11.93602 -11.64570 -11.49718 -11.14293 -10.92701 -10.84379 -10.81796 -10.45689 -10.14549 -9.81192 -9.71044 -9.58194 -8.92590 -8.59706 -7.22665 -5.78508 -3.12848 2.03500 2.78386 2.81616 3.38544 3.42782 3.47659 3.53360 3.60385 3.63323 3.78304 4.26674 4.37170 4.38126 4.57145 4.59214 4.75533 4.88360 4.98599 5.07289 5.11499 5.12985 5.25435 5.34994 5.40530 5.45003 5.51673 5.54187 5.64627 5.67732 5.68783 5.73549 5.77792 5.81494 6.07123 6.16831 6.29199 6.47994 6.58627 6.87912 7.29716 7.95566 7.99948 8.40907 9.21668 9.94108 10.13052 11.39602 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.006250 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.627777 B = 4479.067063 C = 5052.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 H 0.134 0.866 4 C 0.152 3.848 5 N -0.751 5.751 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.010 3.990 9 N -0.932 5.932 10 Si 0.874 3.126 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.279 1.279 14 N -0.583 5.583 15 C 0.085 3.915 16 C 0.520 3.480 17 O -0.519 6.519 18 C -0.127 4.127 19 C 0.445 3.555 20 F -0.171 7.171 21 F -0.175 7.175 22 F -0.133 7.133 23 C -0.188 4.188 24 C 0.067 3.933 25 O -0.379 6.379 26 C 0.061 3.939 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 10.116 -12.634 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.038 4.038 3 H 0.150 0.850 4 C 0.024 3.976 5 N -0.401 5.401 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.186 4.186 9 N -0.579 5.579 10 Si 0.705 3.295 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.205 1.205 14 N -0.314 5.314 15 C -0.057 4.057 16 C 0.305 3.695 17 O -0.395 6.395 18 C -0.132 4.132 19 C 0.390 3.610 20 F -0.153 7.153 21 F -0.156 7.156 22 F -0.113 7.113 23 C -0.225 4.225 24 C -0.010 4.010 25 O -0.297 6.297 26 C -0.016 4.016 27 C -0.173 4.173 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.205 0.795 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.151 9.794 -12.987 21.560 hybrid contribution 1.291 0.286 -0.362 1.371 sum -12.859 10.080 -13.349 21.099 Atomic orbital electron populations 1.22416 0.95167 1.03266 1.02481 1.23142 0.94143 1.00781 0.85703 0.84977 1.20878 0.86337 0.97280 0.93081 1.43100 1.02454 1.73370 1.21213 1.19029 0.89821 1.29834 0.98570 0.89194 1.24609 0.96195 1.00526 0.97306 1.69693 1.07487 1.47423 1.33338 0.86731 0.80175 0.79266 0.83377 1.20972 1.21594 1.20507 1.47708 1.56391 1.09028 1.18290 1.21698 1.02400 0.79062 1.02506 1.19621 0.79264 0.87387 0.83198 1.90691 1.44392 1.70067 1.34387 1.22249 0.97471 0.96542 0.96922 1.20458 0.81278 0.75601 0.83656 1.93222 1.38040 1.95048 1.88951 1.93177 1.94637 1.34308 1.93488 1.93222 1.92447 1.72161 1.53516 1.23257 0.91705 1.04200 1.03336 1.22536 0.96664 0.98803 0.82982 1.87930 1.34280 1.68036 1.39494 1.22687 0.81879 1.00149 0.96867 1.22148 1.01863 1.02011 0.91281 0.91576 0.90622 0.91980 0.94136 0.95164 0.79502 0.93070 0.90931 0.91069 0.90943 0.85960 0.88224 0.87638 0.92678 0.87883 0.91107 0.89202 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.36 37.16 0.31 -1.36 16 2 C 0.06 0.90 1.18 -67.93 -0.08 0.82 16 3 H 0.13 1.84 2.26 -51.93 -0.12 1.72 16 4 C 0.15 2.73 4.97 -4.05 -0.02 2.71 16 5 N -0.75 -17.62 4.16 -59.92 -0.25 -17.87 16 6 C -0.24 -6.86 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 8 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 9 N -0.93 -29.66 13.97 55.49 0.78 -28.88 16 10 Si 0.87 23.64 27.90 -169.99 -4.74 18.89 16 11 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 12 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 13 H -0.28 -7.40 6.28 56.52 0.36 -7.04 16 14 N -0.58 -8.84 1.93 -173.94 -0.34 -9.17 16 15 C 0.09 1.24 9.37 59.84 0.56 1.80 16 16 C 0.52 8.37 4.68 -10.99 -0.05 8.32 16 17 O -0.52 -9.56 13.98 5.56 0.08 -9.48 16 18 C -0.13 -1.74 0.29 -155.48 -0.05 -1.79 16 19 C 0.45 7.21 2.29 37.16 0.08 7.29 16 20 F -0.17 -3.17 16.28 2.25 0.04 -3.13 16 21 F -0.17 -2.48 16.14 2.25 0.04 -2.44 16 22 F -0.13 -2.47 8.09 2.25 0.02 -2.45 16 23 C -0.19 -1.95 3.99 -26.59 -0.11 -2.06 16 24 C 0.07 0.64 5.47 37.21 0.20 0.84 16 25 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16 26 C 0.06 0.68 6.56 37.21 0.24 0.92 16 27 C -0.14 -1.65 4.18 -26.59 -0.11 -1.76 16 28 H 0.07 0.61 7.05 -51.93 -0.37 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.49 5.30 -51.93 -0.28 0.22 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.54 7.81 -51.92 -0.41 0.13 16 33 H 0.37 8.77 2.75 -40.82 -0.11 8.66 16 34 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.83 6.93 -51.93 -0.36 0.47 16 37 H 0.07 1.01 7.38 -51.93 -0.38 0.63 16 38 H 0.12 1.20 2.34 -51.93 -0.12 1.08 16 39 H 0.10 0.93 7.39 -51.93 -0.38 0.54 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.56 7.14 -51.93 -0.37 0.19 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.90 6.27 -51.93 -0.33 0.58 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 1.32 7.36 -51.93 -0.38 0.94 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -34.27 336.23 -4.70 -38.97 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.74 Total: 6.20 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 0.74 Total: 8.92 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.19 Total: -55.92 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.30 Total: -14.11 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.74 Total: 18.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.27 -4.70 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270968885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.986 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds