Wall clock time and date at job start Tue Mar 31 2020 21:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47065 * 2 1 4 4 C 1.52994 * 109.47524 * 119.99941 * 2 1 3 5 5 N 1.46490 * 109.47569 * 171.14637 * 4 2 1 6 6 C 1.36940 * 120.00503 * 178.51230 * 5 4 2 7 7 H 1.08001 * 119.99399 * 3.28031 * 6 5 4 8 8 C 1.38811 * 120.00405 * 183.28623 * 6 5 4 9 9 N 1.31620 * 120.00059 * 182.36420 * 8 6 5 10 10 Si 1.86800 * 119.99887 * 2.36597 * 8 6 5 11 11 H 1.48495 * 109.47281 * 92.96067 * 10 8 6 12 12 H 1.48500 * 109.47172 * 212.96456 * 10 8 6 13 13 H 1.48506 * 109.47119 * 332.96104 * 10 8 6 14 14 N 1.46503 * 109.47077 * 240.00321 * 2 1 3 15 15 C 1.46496 * 119.99959 * 291.11221 * 14 2 1 16 16 C 1.34776 * 120.00036 * 111.10969 * 14 2 1 17 17 O 1.21279 * 120.00028 * 173.12277 * 16 14 2 18 18 C 1.50699 * 120.00026 * 353.40335 * 16 14 2 19 19 C 1.52997 * 109.54568 * 72.02520 * 18 16 14 20 20 F 1.39894 * 109.47274 * 76.36348 * 19 18 16 21 21 F 1.39901 * 109.47081 * 196.36417 * 19 18 16 22 22 F 1.39903 * 109.47159 * 316.35917 * 19 18 16 23 23 C 1.53182 * 109.54321 * 311.75682 * 18 16 14 24 24 C 1.53101 * 109.15939 * 297.11548 * 23 18 16 25 25 O 1.42904 * 109.41371 * 302.38859 * 24 23 18 26 26 C 1.42905 * 114.09813 * 61.16240 * 25 24 23 27 27 C 1.53093 * 109.41202 * 298.84050 * 26 25 24 28 28 H 1.08992 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46796 * 300.00028 * 1 2 3 30 30 H 1.08997 * 109.46848 * 59.99757 * 1 2 3 31 31 H 1.08998 * 109.47396 * 291.15582 * 4 2 1 32 32 H 1.09007 * 109.46620 * 51.14474 * 4 2 1 33 33 H 0.97002 * 120.00160 * 358.51369 * 5 4 2 34 34 H 0.97002 * 119.99636 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47032 * 274.78460 * 15 14 2 36 36 H 1.09002 * 109.46928 * 34.78616 * 15 14 2 37 37 H 1.08999 * 109.47211 * 154.78777 * 15 14 2 38 38 H 1.08999 * 109.52399 * 57.01987 * 23 18 16 39 39 H 1.09000 * 109.52524 * 177.21131 * 23 18 16 40 40 H 1.09003 * 109.47591 * 182.40699 * 24 23 18 41 41 H 1.08994 * 109.49125 * 62.38443 * 24 23 18 42 42 H 1.08991 * 109.47851 * 178.85401 * 26 25 24 43 43 H 1.09000 * 109.48975 * 58.82739 * 26 25 24 44 44 H 1.08996 * 109.52203 * 297.69926 * 27 26 25 45 45 H 1.08999 * 109.51824 * 177.51432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4895 -0.9080 1.1476 6 6 4.1760 -1.5075 2.1697 7 1 3.6422 -1.8902 3.0271 8 6 5.5577 -1.6232 2.1039 9 7 6.2129 -2.2406 3.0641 10 14 6.4872 -0.9027 0.6526 11 1 6.9299 0.4756 0.9833 12 1 7.6731 -1.7459 0.3563 13 1 5.5973 -0.8650 -0.5357 14 7 2.0184 -0.6906 -1.1962 15 6 1.8317 -2.1370 -1.3345 16 6 2.6393 0.0049 -2.1695 17 8 3.1533 -0.5801 -3.0993 18 6 2.7005 1.5090 -2.0992 19 6 3.6745 1.9307 -0.9973 20 9 4.9885 1.7610 -1.4463 21 9 3.4614 3.2756 -0.6762 22 9 3.4640 1.1412 0.1384 23 6 1.3062 2.0648 -1.7935 24 6 0.3585 1.7030 -2.9402 25 8 0.8755 2.2244 -4.1662 26 6 2.1566 1.7041 -4.5273 27 6 3.1764 2.0659 -3.4444 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8116 -0.1243 2.1321 32 1 1.5534 -1.6930 1.3318 33 1 3.9631 -0.6071 0.3564 34 1 7.1784 -2.3217 3.0178 35 1 2.6468 -2.6581 -0.8325 36 1 0.8827 -2.4257 -0.8825 37 1 1.8266 -2.4033 -2.3915 38 1 0.9365 1.6305 -0.8646 39 1 1.3600 3.1489 -1.6937 40 1 -0.6248 2.1326 -2.7484 41 1 0.2734 0.6188 -3.0134 42 1 2.4685 2.1344 -5.4789 43 1 2.0954 0.6199 -4.6214 44 1 3.2681 3.1500 -3.3780 45 1 4.1443 1.6324 -3.6962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270968885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:37 Heat of formation + Delta-G solvation = -164.613135 kcal Electronic energy + Delta-G solvation = -34919.057031 eV Core-core repulsion = 30138.578255 eV Total energy + Delta-G solvation = -4780.478776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.76687 -49.32222 -48.91955 -42.35250 -39.56116 -38.47718 -36.15326 -35.49844 -33.53850 -32.66434 -31.81641 -29.17212 -28.11061 -27.65699 -24.97838 -24.71943 -24.34445 -23.52469 -22.15970 -20.32658 -20.16822 -19.81446 -19.62394 -19.34572 -17.78924 -17.46312 -17.09991 -16.85442 -16.69802 -16.34745 -16.19833 -15.85927 -15.79664 -15.63797 -15.44135 -15.23814 -15.19510 -15.01364 -14.79090 -14.62424 -14.32026 -14.16352 -13.95601 -13.70732 -13.49275 -13.33490 -13.19419 -13.07471 -12.97468 -12.82115 -12.44570 -12.30388 -12.18017 -11.97981 -11.87056 -11.75169 -11.58155 -11.09537 -10.88166 -10.66606 -9.82322 -9.28829 -8.10630 -5.38038 0.82424 1.19619 1.23526 1.25662 1.59417 1.66246 2.34302 2.40923 2.46882 2.64782 2.81636 3.14673 3.23378 3.28046 3.33685 3.59968 3.75224 3.89491 4.08261 4.11328 4.14148 4.26781 4.30211 4.36267 4.41644 4.53746 4.55669 4.66881 4.72818 4.81993 4.83452 4.89193 4.89951 4.92233 4.95511 5.06072 5.28711 5.41264 5.73542 6.08453 6.11147 6.16663 6.76196 7.04500 7.84436 7.99096 9.11412 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.006250 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.627777 B = 4479.067063 C = 5052.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.136 0.864 4 C 0.143 3.857 5 N -0.756 5.756 6 C -0.214 4.214 7 H 0.070 0.930 8 C -0.052 4.052 9 N -0.976 5.976 10 Si 0.926 3.074 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.277 1.277 14 N -0.585 5.585 15 C 0.086 3.914 16 C 0.513 3.487 17 O -0.550 6.550 18 C -0.122 4.122 19 C 0.438 3.562 20 F -0.190 7.190 21 F -0.161 7.161 22 F -0.150 7.150 23 C -0.183 4.183 24 C 0.065 3.935 25 O -0.383 6.383 26 C 0.066 3.934 27 C -0.136 4.136 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.365 0.635 34 H 0.256 0.744 35 H 0.035 0.965 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.278 12.020 -13.849 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 H 0.153 0.847 4 C 0.017 3.983 5 N -0.406 5.406 6 C -0.346 4.346 7 H 0.088 0.912 8 C -0.244 4.244 9 N -0.628 5.628 10 Si 0.757 3.243 11 H -0.208 1.208 12 H -0.221 1.221 13 H -0.203 1.203 14 N -0.315 5.315 15 C -0.056 4.056 16 C 0.299 3.701 17 O -0.429 6.429 18 C -0.127 4.127 19 C 0.383 3.617 20 F -0.171 7.171 21 F -0.143 7.143 22 F -0.132 7.132 23 C -0.220 4.220 24 C -0.012 4.012 25 O -0.301 6.301 26 C -0.010 4.010 27 C -0.174 4.174 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.203 0.797 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.080 11.728 -14.213 25.125 hybrid contribution 2.084 -0.312 0.066 2.108 sum -14.996 11.416 -14.147 23.566 Atomic orbital electron populations 1.22397 0.91090 1.04474 1.04636 1.23158 0.97136 0.99885 0.83103 0.84707 1.21172 0.83087 0.98248 0.95805 1.43197 1.04840 1.72769 1.19790 1.19113 0.89737 1.27326 0.98401 0.91237 1.25156 0.97352 1.02372 0.99517 1.69812 1.07484 1.50126 1.35406 0.85877 0.78932 0.78444 0.81083 1.20833 1.22104 1.20318 1.47863 1.56027 1.09226 1.18410 1.21694 1.02537 0.78757 1.02602 1.20075 0.78608 0.88505 0.82926 1.90674 1.45541 1.70970 1.35707 1.22345 0.98817 0.94935 0.96600 1.20874 0.81090 0.76021 0.83736 1.93182 1.39656 1.95209 1.89100 1.93197 1.94472 1.33166 1.93431 1.93172 1.92538 1.72812 1.54630 1.23354 0.89540 1.05091 1.04002 1.22746 0.97724 0.98773 0.81941 1.87934 1.33937 1.68028 1.40240 1.22643 0.81850 0.99166 0.97382 1.22215 1.01385 1.02890 0.90906 0.90934 0.88573 0.89711 0.93356 0.94536 0.79685 0.93461 0.94587 0.87864 0.90671 0.85240 0.86540 0.84270 0.93333 0.85858 0.93017 0.87352 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 8.36 71.98 0.60 -1.85 16 2 C 0.07 1.72 1.18 44.99 0.05 1.77 16 3 H 0.14 3.35 2.26 -2.38 -0.01 3.35 16 4 C 0.14 4.88 4.97 86.38 0.43 5.31 16 5 N -0.76 -35.12 4.16 -343.47 -1.43 -36.55 16 6 C -0.21 -12.22 10.47 84.03 0.88 -11.34 16 7 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 8 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 9 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 10 Si 0.93 50.04 27.90 68.60 1.91 51.96 16 11 H -0.28 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.29 -15.97 7.11 99.48 0.71 -15.26 16 13 H -0.28 -14.64 6.28 99.48 0.63 -14.02 16 14 N -0.58 -16.72 1.93 -822.60 -1.59 -18.31 16 15 C 0.09 2.41 9.37 127.77 1.20 3.61 16 16 C 0.51 15.87 4.68 87.66 0.41 16.28 16 17 O -0.55 -20.20 13.98 -3.03 -0.04 -20.24 16 18 C -0.12 -3.10 0.29 -52.81 -0.02 -3.12 16 19 C 0.44 13.49 2.29 71.98 0.16 13.66 16 20 F -0.19 -6.94 16.28 44.97 0.73 -6.20 16 21 F -0.16 -4.19 16.14 44.97 0.73 -3.47 16 22 F -0.15 -5.39 8.09 44.97 0.36 -5.03 16 23 C -0.18 -3.11 3.99 30.69 0.12 -2.99 16 24 C 0.06 0.97 5.47 72.02 0.39 1.36 16 25 O -0.38 -7.28 10.77 -148.98 -1.60 -8.89 16 26 C 0.07 1.34 6.56 72.01 0.47 1.81 16 27 C -0.14 -3.10 4.18 30.68 0.13 -2.97 16 28 H 0.07 1.01 7.05 -2.39 -0.02 1.00 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 0.90 5.30 -2.39 -0.01 0.89 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.22 7.81 -2.38 -0.02 1.20 16 33 H 0.37 17.33 2.75 -92.71 -0.25 17.08 16 34 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 2.16 6.93 -2.39 -0.02 2.14 16 37 H 0.07 2.05 7.38 -2.39 -0.02 2.03 16 38 H 0.13 1.99 2.34 -2.39 -0.01 1.99 16 39 H 0.12 1.64 7.39 -2.39 -0.02 1.63 16 40 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 0.82 7.14 -2.39 -0.02 0.80 16 42 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.26 6.27 -2.39 -0.01 1.25 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 2.14 7.36 -2.39 -0.02 2.13 16 Total: -1.00 -76.34 336.23 5.40 -70.95 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.71 Total: 20.43 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.31 Total: 18.84 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -2.71 Total: -118.34 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.65 Total: -29.12 kcal Atomic # 9 Polarization: -16.53 SS G_CDS: 1.82 Total: -14.70 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 1.91 Total: 51.96 kcal Total: -76.34 5.40 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270968885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.668 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds