Wall clock time and date at job start Tue Mar 31 2020 21:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.36935 * 120.00067 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47505 * 59.99960 * 10 8 6 12 12 H 1.48508 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47186 * 299.99677 * 10 8 6 14 14 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 15 15 C 1.46497 * 119.99968 * 59.99779 * 14 2 1 16 16 C 1.34774 * 119.99744 * 239.99606 * 14 2 1 17 17 O 1.21283 * 120.00281 * 0.02562 * 16 14 2 18 18 C 1.50699 * 119.99876 * 179.97438 * 16 14 2 19 19 H 1.09005 * 115.54983 * 34.32867 * 18 16 14 20 20 C 1.52998 * 117.49979 * 248.62313 * 18 16 14 21 21 C 1.53002 * 60.00219 * 252.50747 * 20 18 16 22 22 H 1.08995 * 117.49263 * 107.48698 * 21 20 18 23 23 C 1.50692 * 117.49866 * 252.50982 * 21 20 18 24 24 C 1.38232 * 119.98993 * 8.62232 * 23 21 20 25 25 C 1.38190 * 120.04887 * 179.97438 * 24 23 21 26 26 C 1.38494 * 120.02549 * 0.02562 * 25 24 23 27 27 F 1.35107 * 120.01121 * 179.97438 * 26 25 24 28 28 C 1.38392 * 119.97659 * 0.02562 * 26 25 24 29 29 C 1.38439 * 119.94946 * 359.72061 * 28 26 25 30 30 F 1.35106 * 120.01562 * 180.27433 * 29 28 26 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 35 35 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 36 36 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 37 37 H 0.96992 * 120.00256 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47466 * 90.00240 * 15 14 2 39 39 H 1.09002 * 109.47260 * 210.00281 * 15 14 2 40 40 H 1.09000 * 109.47562 * 329.99730 * 15 14 2 41 41 H 1.09001 * 117.50295 * 359.97438 * 20 18 16 42 42 H 1.09003 * 117.49982 * 145.02159 * 20 18 16 43 43 H 1.07995 * 119.97298 * 359.97282 * 24 23 21 44 44 H 1.08002 * 119.98386 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.02711 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2068 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5392 -2.1509 9 7 6.2216 -1.0458 -1.1210 10 14 6.4998 -2.3741 -3.5374 11 1 6.2433 -1.6539 -4.8105 12 1 7.9546 -2.3501 -3.2401 13 1 6.0431 -3.7814 -3.6641 14 7 2.0183 -0.6906 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0859 1.1256 1.8916 18 6 3.2951 -0.7459 3.3140 19 1 3.5214 -1.8045 3.1865 20 6 2.7318 -0.3013 4.6653 21 6 4.1704 0.0520 4.2826 22 1 4.3832 1.0906 4.0296 23 6 5.2791 -0.6859 4.9876 24 6 4.9831 -1.7604 5.8054 25 6 5.9989 -2.4383 6.4520 26 6 7.3148 -2.0415 6.2819 27 9 8.3077 -2.7041 6.9147 28 6 7.6123 -0.9652 5.4643 29 6 6.5943 -0.2901 4.8128 30 9 6.8837 0.7573 4.0099 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6053 -1.7198 -1.2952 35 1 1.7516 -0.1584 -2.1370 36 1 3.9824 -0.4623 -0.4320 37 1 7.1883 -1.1155 -1.0822 38 1 2.4156 -2.7377 0.9717 39 1 1.6237 -2.2852 2.5002 40 1 0.6903 -2.3002 0.9847 41 1 1.9985 0.5052 4.6642 42 1 2.5873 -1.0674 5.4270 43 1 3.9572 -2.0702 5.9389 44 1 5.7664 -3.2774 7.0910 45 1 8.6382 -0.6548 5.3313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271052377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:45 Heat of formation + Delta-G solvation = -55.637287 kcal Electronic energy + Delta-G solvation = -29546.357323 eV Core-core repulsion = 25201.373319 eV Total energy + Delta-G solvation = -4344.984004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.14985 -48.90808 -40.24845 -39.09480 -36.98035 -35.73726 -33.94528 -31.89336 -31.01323 -30.38549 -29.97712 -26.63732 -25.64221 -24.65574 -24.20709 -22.95303 -22.47110 -21.06583 -20.22096 -18.59872 -18.41663 -17.55833 -17.06964 -16.99915 -16.09364 -16.01058 -15.90513 -15.57344 -15.29777 -15.02199 -14.69713 -14.54316 -14.37045 -14.02108 -13.63354 -13.38077 -13.15706 -12.81377 -12.63841 -12.42857 -12.35808 -12.27420 -12.24977 -11.91085 -11.89498 -11.67686 -11.53925 -11.40970 -10.81410 -10.76196 -10.72629 -10.55685 -10.42408 -10.04324 -9.65739 -9.43610 -9.20540 -8.83172 -8.59535 -8.21521 -6.86083 -5.68745 -2.98645 0.73980 0.84881 2.75922 3.14020 3.31174 3.46208 3.50577 3.52211 3.72710 3.91339 4.28318 4.30762 4.38473 4.62000 4.64416 4.71188 4.78011 4.91193 5.03921 5.15375 5.30667 5.36980 5.42998 5.43603 5.58123 5.63523 5.64435 5.66233 5.72793 5.77495 5.84702 5.86659 5.89573 5.98864 6.11235 6.15853 6.20700 6.23664 6.40046 6.50800 6.59834 6.76207 7.02365 7.72920 7.76790 8.48240 8.57925 9.59599 10.18672 10.54022 11.52934 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.003886 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.316913 B = 7203.773510 C = 9338.663682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.592 5.592 15 C 0.080 3.920 16 C 0.548 3.452 17 O -0.538 6.538 18 C -0.163 4.163 19 H 0.127 0.873 20 C -0.144 4.144 21 C -0.087 4.087 22 H 0.132 0.868 23 C -0.092 4.092 24 C -0.064 4.064 25 C -0.163 4.163 26 C 0.123 3.877 27 F -0.134 7.134 28 C -0.190 4.190 29 C 0.148 3.852 30 F -0.119 7.119 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.027 0.973 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -2.600 18.135 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.325 5.325 15 C -0.063 4.063 16 C 0.335 3.665 17 O -0.415 6.415 18 C -0.184 4.184 19 H 0.145 0.855 20 C -0.181 4.181 21 C -0.105 4.105 22 H 0.150 0.850 23 C -0.093 4.093 24 C -0.082 4.082 25 C -0.182 4.182 26 C 0.104 3.896 27 F -0.112 7.112 28 C -0.209 4.209 29 C 0.129 3.871 30 F -0.097 7.097 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.018 -2.051 17.854 19.679 hybrid contribution 1.166 -0.541 -0.786 1.507 sum -6.851 -2.592 17.068 18.574 Atomic orbital electron populations 1.22059 0.95233 1.01994 1.02038 1.21392 0.93170 0.98526 0.84687 0.88243 1.20993 0.87184 0.96688 0.93571 1.42292 0.99655 1.70097 1.25188 1.19149 0.89433 1.29649 0.99198 0.91400 1.24744 0.96433 1.01624 0.97961 1.69680 1.07195 1.50544 1.30082 0.86311 0.79085 0.79208 0.81804 1.21307 1.21729 1.21376 1.47526 1.50449 1.12229 1.22251 1.21729 1.01331 0.82250 1.00973 1.19393 0.77573 0.86250 0.83261 1.90689 1.57160 1.17147 1.76466 1.22371 1.04973 1.00861 0.90243 0.85468 1.23130 0.95875 1.03547 0.95534 1.20882 0.89122 1.00355 1.00137 0.85000 1.19244 0.92238 0.97928 0.99902 1.20765 0.99821 0.93231 0.94411 1.21122 0.90756 1.02691 1.03590 1.17285 0.85176 0.92375 0.94765 1.91525 1.60474 1.79295 1.79954 1.21050 1.00927 0.98004 1.00966 1.17113 0.92178 0.86594 0.91237 1.91602 1.93987 1.53839 1.70270 0.92359 0.92663 0.91410 0.96264 0.95565 0.77912 0.93516 0.91763 0.91624 0.91286 0.87595 0.87499 0.83815 0.84023 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.17 37.16 0.34 -1.62 16 2 C 0.13 2.16 2.80 -67.93 -0.19 1.97 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.62 16 4 C 0.14 2.95 5.55 -4.04 -0.02 2.93 16 5 N -0.73 -19.13 5.43 -59.91 -0.33 -19.45 16 6 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 10 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.59 -9.74 2.24 -173.94 -0.39 -10.13 16 15 C 0.08 1.05 9.17 59.85 0.55 1.60 16 16 C 0.55 9.79 7.16 -10.99 -0.08 9.71 16 17 O -0.54 -11.67 15.59 5.56 0.09 -11.58 16 18 C -0.16 -2.26 4.43 -91.77 -0.41 -2.67 16 19 H 0.13 1.65 7.26 -51.93 -0.38 1.28 16 20 C -0.14 -1.43 9.56 -26.73 -0.26 -1.69 16 21 C -0.09 -1.16 5.31 -91.77 -0.49 -1.65 16 22 H 0.13 2.07 7.39 -51.93 -0.38 1.69 16 23 C -0.09 -1.15 5.62 -104.55 -0.59 -1.74 16 24 C -0.06 -0.61 9.29 -39.60 -0.37 -0.98 16 25 C -0.16 -1.52 10.03 -39.50 -0.40 -1.91 16 26 C 0.12 1.38 7.30 -39.43 -0.29 1.09 16 27 F -0.13 -1.53 17.27 2.25 0.04 -1.49 16 28 C -0.19 -2.33 10.01 -39.45 -0.39 -2.72 16 29 C 0.15 2.09 7.25 -39.43 -0.29 1.80 16 30 F -0.12 -1.98 16.61 2.25 0.04 -1.94 16 31 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 11.07 7.06 -40.82 -0.29 10.78 16 37 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.66 6.64 -51.93 -0.34 0.31 16 40 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 43 H 0.14 0.94 6.02 -52.49 -0.32 0.63 16 44 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -35.08 380.56 -8.22 -43.30 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.98 Total: 9.49 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.12 Total: -3.43 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.01 Total: -57.99 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.08 -8.22 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.339 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds