Wall clock time and date at job start Tue Mar 31 2020 21:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.36935 * 120.00067 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47505 * 59.99960 * 10 8 6 12 12 H 1.48508 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47186 * 299.99677 * 10 8 6 14 14 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 15 15 C 1.46497 * 119.99968 * 59.99779 * 14 2 1 16 16 C 1.34774 * 119.99744 * 239.99606 * 14 2 1 17 17 O 1.21283 * 120.00281 * 0.02562 * 16 14 2 18 18 C 1.50699 * 119.99876 * 179.97438 * 16 14 2 19 19 H 1.09005 * 115.54983 * 34.32867 * 18 16 14 20 20 C 1.52998 * 117.49979 * 248.62313 * 18 16 14 21 21 C 1.53002 * 60.00219 * 252.50747 * 20 18 16 22 22 H 1.08995 * 117.49263 * 107.48698 * 21 20 18 23 23 C 1.50692 * 117.49866 * 252.50982 * 21 20 18 24 24 C 1.38232 * 119.98993 * 8.62232 * 23 21 20 25 25 C 1.38190 * 120.04887 * 179.97438 * 24 23 21 26 26 C 1.38494 * 120.02549 * 0.02562 * 25 24 23 27 27 F 1.35107 * 120.01121 * 179.97438 * 26 25 24 28 28 C 1.38392 * 119.97659 * 0.02562 * 26 25 24 29 29 C 1.38439 * 119.94946 * 359.72061 * 28 26 25 30 30 F 1.35106 * 120.01562 * 180.27433 * 29 28 26 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 35 35 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 36 36 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 37 37 H 0.96992 * 120.00256 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47466 * 90.00240 * 15 14 2 39 39 H 1.09002 * 109.47260 * 210.00281 * 15 14 2 40 40 H 1.09000 * 109.47562 * 329.99730 * 15 14 2 41 41 H 1.09001 * 117.50295 * 359.97438 * 20 18 16 42 42 H 1.09003 * 117.49982 * 145.02159 * 20 18 16 43 43 H 1.07995 * 119.97298 * 359.97282 * 24 23 21 44 44 H 1.08002 * 119.98386 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.02711 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2068 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5392 -2.1509 9 7 6.2216 -1.0458 -1.1210 10 14 6.4998 -2.3741 -3.5374 11 1 6.2433 -1.6539 -4.8105 12 1 7.9546 -2.3501 -3.2401 13 1 6.0431 -3.7814 -3.6641 14 7 2.0183 -0.6906 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0859 1.1256 1.8916 18 6 3.2951 -0.7459 3.3140 19 1 3.5214 -1.8045 3.1865 20 6 2.7318 -0.3013 4.6653 21 6 4.1704 0.0520 4.2826 22 1 4.3832 1.0906 4.0296 23 6 5.2791 -0.6859 4.9876 24 6 4.9831 -1.7604 5.8054 25 6 5.9989 -2.4383 6.4520 26 6 7.3148 -2.0415 6.2819 27 9 8.3077 -2.7041 6.9147 28 6 7.6123 -0.9652 5.4643 29 6 6.5943 -0.2901 4.8128 30 9 6.8837 0.7573 4.0099 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6053 -1.7198 -1.2952 35 1 1.7516 -0.1584 -2.1370 36 1 3.9824 -0.4623 -0.4320 37 1 7.1883 -1.1155 -1.0822 38 1 2.4156 -2.7377 0.9717 39 1 1.6237 -2.2852 2.5002 40 1 0.6903 -2.3002 0.9847 41 1 1.9985 0.5052 4.6642 42 1 2.5873 -1.0674 5.4270 43 1 3.9572 -2.0702 5.9389 44 1 5.7664 -3.2774 7.0910 45 1 8.6382 -0.6548 5.3313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271052377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:44 Heat of formation + Delta-G solvation = -77.155596 kcal Electronic energy + Delta-G solvation = -29547.290427 eV Core-core repulsion = 25201.373319 eV Total energy + Delta-G solvation = -4345.917108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.06648 -50.02351 -41.43520 -40.12654 -38.21542 -37.02734 -35.83448 -33.54105 -31.96698 -31.80054 -31.16940 -27.78589 -27.37920 -25.85733 -25.09372 -24.40741 -23.83703 -22.11809 -21.44452 -19.91058 -19.38406 -19.11485 -18.65342 -18.10457 -17.28735 -16.99638 -16.95225 -16.75819 -16.50839 -16.35127 -16.33450 -15.52672 -15.39376 -15.36156 -15.18445 -15.13277 -14.33674 -14.05907 -13.88176 -13.73083 -13.56437 -13.34653 -13.27992 -13.20094 -13.02557 -12.92295 -12.75945 -12.60511 -12.54012 -12.37033 -12.19903 -11.81288 -11.75718 -11.63885 -11.56129 -10.99806 -10.75764 -10.08880 -9.55717 -9.51888 -9.02255 -7.94957 -5.25688 -0.15397 -0.02111 1.42457 1.46677 1.52607 1.52961 2.05601 2.27717 2.53491 2.80840 2.92120 3.31986 3.37479 3.39281 3.53280 3.65046 3.74218 3.86633 3.91233 4.03463 4.10601 4.15181 4.22407 4.33349 4.39547 4.48081 4.62868 4.73034 4.78975 4.80072 4.84235 4.86053 4.90258 4.92259 4.92614 5.04308 5.06635 5.07475 5.16380 5.28766 5.32764 5.45218 5.70238 5.73680 6.23393 6.49263 7.25217 7.30293 8.07509 8.30348 9.27460 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.003886 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.316913 B = 7203.773510 C = 9338.663682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.062 0.938 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.246 4.246 7 H 0.079 0.921 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.278 1.278 12 H -0.299 1.299 13 H -0.272 1.272 14 N -0.593 5.593 15 C 0.077 3.923 16 C 0.532 3.468 17 O -0.594 6.594 18 C -0.179 4.179 19 H 0.140 0.860 20 C -0.093 4.093 21 C -0.108 4.108 22 H 0.092 0.908 23 C -0.098 4.098 24 C -0.051 4.051 25 C -0.144 4.144 26 C 0.114 3.886 27 F -0.136 7.136 28 C -0.199 4.199 29 C 0.105 3.895 30 F -0.149 7.149 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.036 0.964 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.188 0.812 44 H 0.181 0.819 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 -5.739 19.613 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.097 0.903 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.226 1.226 13 H -0.197 1.197 14 N -0.323 5.323 15 C -0.065 4.065 16 C 0.322 3.678 17 O -0.475 6.475 18 C -0.200 4.200 19 H 0.158 0.842 20 C -0.130 4.130 21 C -0.127 4.127 22 H 0.110 0.890 23 C -0.099 4.099 24 C -0.068 4.068 25 C -0.162 4.162 26 C 0.095 3.905 27 F -0.114 7.114 28 C -0.219 4.219 29 C 0.085 3.915 30 F -0.128 7.128 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.202 0.798 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.175 0.825 43 H 0.205 0.795 44 H 0.198 0.802 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.037 -5.232 19.308 22.847 hybrid contribution 2.034 0.452 -1.259 2.435 sum -9.003 -4.780 18.049 20.728 Atomic orbital electron populations 1.21959 0.90951 1.03805 1.03152 1.21273 0.96259 0.96155 0.83935 0.91991 1.21218 0.84077 0.97881 0.95369 1.42531 1.02082 1.69783 1.24139 1.19625 0.89966 1.28491 0.99660 0.90298 1.25622 0.97549 1.03107 1.00573 1.69889 1.06805 1.52802 1.32507 0.85192 0.76930 0.78756 0.78755 1.20449 1.22595 1.19724 1.47690 1.49797 1.13524 1.21331 1.21957 1.01514 0.79414 1.03585 1.20224 0.76995 0.85951 0.84616 1.90657 1.59130 1.19755 1.77943 1.22361 1.06828 1.00771 0.90074 0.84182 1.23358 0.92662 1.03751 0.93195 1.20757 0.91813 0.98616 1.01521 0.88986 1.19369 0.90957 0.98970 1.00568 1.21187 1.01933 0.91284 0.92410 1.21564 0.89355 1.02740 1.02540 1.17467 0.86210 0.92118 0.94741 1.91521 1.60835 1.79178 1.79910 1.21118 1.00728 0.98628 1.01384 1.17593 0.93880 0.87246 0.92750 1.91515 1.94311 1.55461 1.71516 0.90063 0.91574 0.90363 0.94402 0.95519 0.79844 0.94381 0.94525 0.87873 0.88715 0.87360 0.82525 0.79519 0.80210 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.17 71.98 0.66 -2.55 16 2 C 0.13 4.40 2.80 44.99 0.13 4.52 16 3 H 0.06 2.60 6.90 -2.39 -0.02 2.59 16 4 C 0.14 5.77 5.55 86.38 0.48 6.25 16 5 N -0.74 -40.05 5.43 -343.45 -1.87 -41.91 16 6 C -0.25 -14.25 9.99 84.04 0.84 -13.41 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 8 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 9 N -0.97 -63.40 13.06 21.65 0.28 -63.12 16 10 Si 0.98 47.87 29.55 68.60 2.03 49.90 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 N -0.59 -19.25 2.24 -822.60 -1.85 -21.10 16 15 C 0.08 1.82 9.17 127.77 1.17 2.99 16 16 C 0.53 19.59 7.16 87.66 0.63 20.22 16 17 O -0.59 -27.76 15.59 -3.04 -0.05 -27.81 16 18 C -0.18 -4.81 4.43 -11.54 -0.05 -4.87 16 19 H 0.14 3.35 7.26 -2.38 -0.02 3.33 16 20 C -0.09 -1.56 9.56 30.59 0.29 -1.27 16 21 C -0.11 -2.95 5.31 -11.54 -0.06 -3.01 16 22 H 0.09 3.23 7.39 -2.39 -0.02 3.22 16 23 C -0.10 -2.41 5.62 -19.82 -0.11 -2.52 16 24 C -0.05 -0.77 9.29 22.26 0.21 -0.57 16 25 C -0.14 -2.15 10.03 22.32 0.22 -1.92 16 26 C 0.11 2.41 7.30 22.37 0.16 2.57 16 27 F -0.14 -2.93 17.27 44.97 0.78 -2.16 16 28 C -0.20 -5.12 10.01 22.35 0.22 -4.89 16 29 C 0.10 3.16 7.25 22.37 0.16 3.32 16 30 F -0.15 -5.65 16.61 44.97 0.75 -4.90 16 31 H 0.08 1.50 6.66 -2.39 -0.02 1.48 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.37 22.25 7.06 -92.71 -0.65 21.59 16 37 H 0.25 15.84 8.31 -92.71 -0.77 15.06 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.64 6.64 -2.39 -0.02 1.63 16 40 H 0.09 1.73 6.43 -2.39 -0.02 1.71 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.16 1.06 6.18 -2.39 -0.01 1.05 16 43 H 0.19 1.17 6.02 -2.91 -0.02 1.15 16 44 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -84.41 380.56 5.87 -78.54 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.38 Total: 31.81 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.42 Total: 0.75 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -3.43 Total: -126.14 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.52 Total: -7.06 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -84.41 5.87 -78.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.385 kcal (2) G-P(sol) polarization free energy of solvation -84.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds