Wall clock time and date at job start Tue Mar 31 2020 21:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47553 * 2 1 4 4 C 1.53001 * 109.47217 * 120.00101 * 2 1 3 5 5 N 1.46500 * 109.46941 * 174.99614 * 4 2 1 6 6 C 1.36943 * 119.99878 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99698 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00319 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00011 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 59.99967 * 10 8 6 12 12 H 1.48503 * 109.47261 * 300.00148 * 10 8 6 13 13 H 1.48500 * 109.47454 * 180.02562 * 10 8 6 14 14 N 1.46501 * 109.47177 * 240.00226 * 2 1 3 15 15 C 1.46501 * 119.99597 * 300.00171 * 14 2 1 16 16 C 1.34773 * 120.00545 * 119.99654 * 14 2 1 17 17 O 1.21286 * 119.99683 * 0.02562 * 16 14 2 18 18 C 1.50696 * 120.00276 * 180.02562 * 16 14 2 19 19 H 1.08994 * 115.55014 * 34.32851 * 18 16 14 20 20 C 1.53008 * 117.49617 * 248.62107 * 18 16 14 21 21 C 1.52998 * 60.00103 * 252.51194 * 20 18 16 22 22 H 1.09004 * 117.49642 * 107.48847 * 21 20 18 23 23 C 1.50694 * 117.49905 * 252.51276 * 21 20 18 24 24 C 1.38231 * 119.99063 * 8.62367 * 23 21 20 25 25 C 1.38183 * 120.05104 * 179.97438 * 24 23 21 26 26 C 1.38488 * 120.02877 * 0.02562 * 25 24 23 27 27 F 1.35103 * 120.01396 * 179.97438 * 26 25 24 28 28 C 1.38394 * 119.97668 * 359.97438 * 26 25 24 29 29 C 1.38445 * 119.94579 * 359.72767 * 28 26 25 30 30 F 1.35102 * 120.01472 * 180.27097 * 29 28 26 31 31 H 1.08992 * 109.47014 * 59.99635 * 1 2 3 32 32 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46537 * 300.00063 * 1 2 3 34 34 H 1.09000 * 109.46906 * 55.00081 * 4 2 1 35 35 H 1.08992 * 109.47614 * 294.99814 * 4 2 1 36 36 H 0.97000 * 120.00415 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99542 * 359.97438 * 9 8 6 38 38 H 1.09009 * 109.47431 * 90.00100 * 15 14 2 39 39 H 1.09003 * 109.46967 * 209.99525 * 15 14 2 40 40 H 1.08994 * 109.47497 * 329.99495 * 15 14 2 41 41 H 1.09001 * 117.49714 * 0.02562 * 20 18 16 42 42 H 1.08998 * 117.49360 * 145.01666 * 20 18 16 43 43 H 1.07998 * 119.97228 * 359.97438 * 24 23 21 44 44 H 1.08006 * 119.98427 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.02878 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1840 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0520 8 6 5.5673 -1.5382 2.1512 9 7 6.2218 -1.0449 1.1213 10 14 6.5001 -2.3730 3.5376 11 1 6.0434 -3.7804 3.6644 12 1 6.2438 -1.6529 4.8107 13 1 7.9549 -2.3491 3.2402 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4280 16 6 2.7931 -0.0356 -2.0834 17 8 3.0865 1.1254 -1.8913 18 6 3.2950 -0.7459 -3.3141 19 1 2.6158 -1.4838 -3.7408 20 6 4.7955 -1.0318 -3.4023 21 6 4.1703 0.0521 -4.2827 22 1 4.3831 1.0908 -4.0297 23 6 4.0277 -0.2428 -5.7536 24 6 4.2865 -1.5137 -6.2318 25 6 4.1556 -1.7856 -7.5803 26 6 3.7654 -0.7849 -8.4544 27 9 3.6380 -1.0509 -9.7728 28 6 3.5059 0.4879 -7.9769 29 6 3.6314 0.7577 -6.6248 30 9 3.3732 1.9983 -6.1564 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.6054 -1.7198 1.2951 35 1 1.7518 -0.1584 2.1370 36 1 3.9824 -0.4629 0.4314 37 1 5.7373 -0.6117 0.4012 38 1 0.7374 -2.1443 -1.9994 39 1 2.4628 -2.5818 -1.9865 40 1 1.5295 -2.5968 -0.4709 41 1 5.4195 -0.7065 -2.5699 42 1 5.1036 -1.9582 -3.8869 43 1 4.5913 -2.2946 -5.5509 44 1 4.3586 -2.7789 -7.9528 45 1 3.2011 1.2689 -8.6578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271052379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:49 Heat of formation + Delta-G solvation = -56.937706 kcal Electronic energy + Delta-G solvation = -29355.098815 eV Core-core repulsion = 25010.058421 eV Total energy + Delta-G solvation = -4345.040394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.31440 -49.16926 -40.34546 -39.24240 -37.07245 -35.84882 -34.26066 -32.03977 -31.17704 -30.48701 -29.86769 -26.70983 -25.48899 -24.68393 -24.26327 -23.07928 -22.65318 -21.10158 -20.33371 -18.69201 -18.58496 -17.67930 -17.23170 -17.18532 -16.28239 -16.16407 -16.04693 -15.71063 -15.53307 -15.32162 -14.73700 -14.69053 -14.34049 -14.09820 -13.74443 -13.45196 -13.41476 -12.95584 -12.74417 -12.64213 -12.56464 -12.41294 -12.31215 -12.12388 -11.86398 -11.81106 -11.52820 -11.38545 -10.81556 -10.74583 -10.64540 -10.53325 -10.44581 -9.98363 -9.54304 -9.37972 -9.18048 -8.87601 -8.75123 -8.34306 -6.97453 -6.07898 -3.07027 0.57279 0.66640 2.67906 2.95510 3.21868 3.50997 3.54641 3.55091 3.72471 3.90414 4.10150 4.18742 4.25867 4.50499 4.65429 4.68920 4.75191 4.79910 4.92926 5.06305 5.19380 5.31985 5.36146 5.43782 5.48517 5.52375 5.59863 5.62200 5.63689 5.65578 5.72444 5.79040 5.85725 5.97095 5.99725 6.06484 6.09961 6.18140 6.26613 6.42401 6.43674 6.64393 6.91072 7.65426 7.81344 8.45756 8.78451 9.26033 10.12701 10.28809 11.40092 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.002850 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.656412 B = 9822.478407 C =10844.732610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.099 0.901 4 C 0.149 3.851 5 N -0.738 5.738 6 C -0.332 4.332 7 H 0.062 0.938 8 C -0.045 4.045 9 N -0.941 5.941 10 Si 1.080 2.920 11 H -0.296 1.296 12 H -0.296 1.296 13 H -0.285 1.285 14 N -0.593 5.593 15 C 0.082 3.918 16 C 0.545 3.455 17 O -0.539 6.539 18 C -0.170 4.170 19 H 0.124 0.876 20 C -0.132 4.132 21 C -0.094 4.094 22 H 0.132 0.868 23 C -0.088 4.088 24 C -0.063 4.063 25 C -0.159 4.159 26 C 0.122 3.878 27 F -0.133 7.133 28 C -0.191 4.191 29 C 0.140 3.860 30 F -0.124 7.124 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.029 0.971 36 H 0.369 0.631 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -2.736 -18.155 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.021 3.979 5 N -0.384 5.384 6 C -0.463 4.463 7 H 0.081 0.919 8 C -0.242 4.242 9 N -0.586 5.586 10 Si 0.911 3.089 11 H -0.224 1.224 12 H -0.224 1.224 13 H -0.210 1.210 14 N -0.325 5.325 15 C -0.061 4.061 16 C 0.332 3.668 17 O -0.416 6.416 18 C -0.191 4.191 19 H 0.142 0.858 20 C -0.169 4.169 21 C -0.113 4.113 22 H 0.150 0.850 23 C -0.090 4.090 24 C -0.081 4.081 25 C -0.178 4.178 26 C 0.102 3.898 27 F -0.112 7.112 28 C -0.210 4.210 29 C 0.120 3.880 30 F -0.102 7.102 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.649 -2.610 -17.323 19.116 hybrid contribution -1.666 0.576 -0.867 1.965 sum -9.315 -2.034 -18.191 20.538 Atomic orbital electron populations 1.22040 0.95015 1.02093 1.02091 1.21421 0.93462 0.98449 0.84589 0.88304 1.20933 0.86570 0.96799 0.93609 1.42285 1.00331 1.71002 1.24789 1.20007 0.92236 1.33704 1.00328 0.91948 1.25742 0.93362 1.01820 1.03323 1.70867 1.37326 1.40704 1.09737 0.83246 0.76279 0.75223 0.74167 1.22377 1.22362 1.21045 1.47574 1.50463 1.12248 1.22250 1.21708 0.99796 0.81910 1.02691 1.19500 0.77775 0.86297 0.83191 1.90696 1.57437 1.16947 1.76493 1.22346 0.96198 1.03469 0.97091 0.85845 1.23209 0.92443 0.99289 1.01943 1.20943 1.03970 0.99847 0.86514 0.84991 1.19307 1.01943 0.93270 0.94434 1.20880 0.96608 0.95852 0.94762 1.21186 1.03560 0.99768 0.93273 1.17291 1.00974 0.93400 0.78102 1.91530 1.93436 1.94380 1.31851 1.21013 1.07365 0.97594 0.95064 1.17100 0.99409 0.80426 0.91044 1.91564 1.91121 1.38679 1.88851 0.92620 0.92365 0.91386 0.96079 0.95376 0.79727 0.93432 0.93331 0.91124 0.90375 0.86426 0.87347 0.83482 0.83850 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 37.16 0.34 -1.66 16 2 C 0.12 2.13 2.80 -67.93 -0.19 1.94 16 3 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 4 C 0.15 3.03 5.50 -4.04 -0.02 3.01 16 5 N -0.74 -18.91 5.43 -59.91 -0.33 -19.23 16 6 C -0.33 -9.43 9.99 -15.06 -0.15 -9.58 16 7 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 8 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 9 N -0.94 -29.16 13.70 55.49 0.76 -28.40 16 10 Si 1.08 25.97 29.92 -169.99 -5.09 20.88 16 11 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 N -0.59 -9.65 2.24 -173.93 -0.39 -10.04 16 15 C 0.08 1.07 9.06 59.85 0.54 1.61 16 16 C 0.54 9.56 7.16 -10.99 -0.08 9.48 16 17 O -0.54 -11.48 15.59 5.55 0.09 -11.39 16 18 C -0.17 -2.30 4.43 -91.77 -0.41 -2.70 16 19 H 0.12 1.33 7.26 -51.93 -0.38 0.96 16 20 C -0.13 -1.72 9.56 -26.73 -0.26 -1.98 16 21 C -0.09 -1.24 5.30 -91.77 -0.49 -1.73 16 22 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 23 C -0.09 -0.97 5.62 -104.55 -0.59 -1.56 16 24 C -0.06 -0.55 9.29 -39.60 -0.37 -0.91 16 25 C -0.16 -1.27 10.02 -39.51 -0.40 -1.67 16 26 C 0.12 1.12 7.30 -39.43 -0.29 0.83 16 27 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 28 C -0.19 -1.83 10.01 -39.45 -0.39 -2.22 16 29 C 0.14 1.58 7.25 -39.42 -0.29 1.30 16 30 F -0.12 -1.62 16.61 2.25 0.04 -1.58 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.02 0.42 6.88 -51.93 -0.36 0.06 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.37 9.97 5.90 -40.82 -0.24 9.73 16 37 H 0.25 7.91 6.77 -40.82 -0.28 7.63 16 38 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.85 6.64 -51.93 -0.34 0.51 16 40 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 41 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 42 H 0.11 1.08 6.18 -51.93 -0.32 0.76 16 43 H 0.15 1.01 6.02 -52.49 -0.32 0.69 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -34.22 378.87 -8.17 -42.39 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.88 Total: 10.13 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.12 Total: -7.24 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.04 Total: -57.67 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.22 -8.17 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.548 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds