Wall clock time and date at job start Tue Mar 31 2020 21:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47553 * 2 1 4 4 C 1.53001 * 109.47217 * 120.00101 * 2 1 3 5 5 N 1.46500 * 109.46941 * 174.99614 * 4 2 1 6 6 C 1.36943 * 119.99878 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99698 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00319 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00011 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 59.99967 * 10 8 6 12 12 H 1.48503 * 109.47261 * 300.00148 * 10 8 6 13 13 H 1.48500 * 109.47454 * 180.02562 * 10 8 6 14 14 N 1.46501 * 109.47177 * 240.00226 * 2 1 3 15 15 C 1.46501 * 119.99597 * 300.00171 * 14 2 1 16 16 C 1.34773 * 120.00545 * 119.99654 * 14 2 1 17 17 O 1.21286 * 119.99683 * 0.02562 * 16 14 2 18 18 C 1.50696 * 120.00276 * 180.02562 * 16 14 2 19 19 H 1.08994 * 115.55014 * 34.32851 * 18 16 14 20 20 C 1.53008 * 117.49617 * 248.62107 * 18 16 14 21 21 C 1.52998 * 60.00103 * 252.51194 * 20 18 16 22 22 H 1.09004 * 117.49642 * 107.48847 * 21 20 18 23 23 C 1.50694 * 117.49905 * 252.51276 * 21 20 18 24 24 C 1.38231 * 119.99063 * 8.62367 * 23 21 20 25 25 C 1.38183 * 120.05104 * 179.97438 * 24 23 21 26 26 C 1.38488 * 120.02877 * 0.02562 * 25 24 23 27 27 F 1.35103 * 120.01396 * 179.97438 * 26 25 24 28 28 C 1.38394 * 119.97668 * 359.97438 * 26 25 24 29 29 C 1.38445 * 119.94579 * 359.72767 * 28 26 25 30 30 F 1.35102 * 120.01472 * 180.27097 * 29 28 26 31 31 H 1.08992 * 109.47014 * 59.99635 * 1 2 3 32 32 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46537 * 300.00063 * 1 2 3 34 34 H 1.09000 * 109.46906 * 55.00081 * 4 2 1 35 35 H 1.08992 * 109.47614 * 294.99814 * 4 2 1 36 36 H 0.97000 * 120.00415 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99542 * 359.97438 * 9 8 6 38 38 H 1.09009 * 109.47431 * 90.00100 * 15 14 2 39 39 H 1.09003 * 109.46967 * 209.99525 * 15 14 2 40 40 H 1.08994 * 109.47497 * 329.99495 * 15 14 2 41 41 H 1.09001 * 117.49714 * 0.02562 * 20 18 16 42 42 H 1.08998 * 117.49360 * 145.01666 * 20 18 16 43 43 H 1.07998 * 119.97228 * 359.97438 * 24 23 21 44 44 H 1.08006 * 119.98427 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.02878 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1840 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0520 8 6 5.5673 -1.5382 2.1512 9 7 6.2218 -1.0449 1.1213 10 14 6.5001 -2.3730 3.5376 11 1 6.0434 -3.7804 3.6644 12 1 6.2438 -1.6529 4.8107 13 1 7.9549 -2.3491 3.2402 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4280 16 6 2.7931 -0.0356 -2.0834 17 8 3.0865 1.1254 -1.8913 18 6 3.2950 -0.7459 -3.3141 19 1 2.6158 -1.4838 -3.7408 20 6 4.7955 -1.0318 -3.4023 21 6 4.1703 0.0521 -4.2827 22 1 4.3831 1.0908 -4.0297 23 6 4.0277 -0.2428 -5.7536 24 6 4.2865 -1.5137 -6.2318 25 6 4.1556 -1.7856 -7.5803 26 6 3.7654 -0.7849 -8.4544 27 9 3.6380 -1.0509 -9.7728 28 6 3.5059 0.4879 -7.9769 29 6 3.6314 0.7577 -6.6248 30 9 3.3732 1.9983 -6.1564 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.6054 -1.7198 1.2951 35 1 1.7518 -0.1584 2.1370 36 1 3.9824 -0.4629 0.4314 37 1 5.7373 -0.6117 0.4012 38 1 0.7374 -2.1443 -1.9994 39 1 2.4628 -2.5818 -1.9865 40 1 1.5295 -2.5968 -0.4709 41 1 5.4195 -0.7065 -2.5699 42 1 5.1036 -1.9582 -3.8869 43 1 4.5913 -2.2946 -5.5509 44 1 4.3586 -2.7789 -7.9528 45 1 3.2011 1.2689 -8.6578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271052379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:48 Heat of formation + Delta-G solvation = -76.798493 kcal Electronic energy + Delta-G solvation = -29355.960044 eV Core-core repulsion = 25010.058421 eV Total energy + Delta-G solvation = -4345.901623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.08810 -50.02779 -41.54770 -40.19517 -38.33645 -37.14827 -36.13510 -33.61490 -31.93306 -31.72628 -31.19248 -27.85451 -27.15463 -25.91888 -25.16108 -24.62920 -23.87111 -22.18403 -21.51630 -19.99542 -19.40739 -19.31821 -18.73295 -18.13977 -17.48529 -17.04954 -16.98369 -16.85171 -16.61667 -16.36370 -16.06681 -15.78155 -15.50165 -15.35392 -15.31275 -15.23268 -14.34184 -14.25100 -14.01195 -13.82738 -13.64221 -13.42992 -13.30094 -13.22634 -13.07948 -12.81392 -12.64016 -12.61652 -12.55611 -12.42776 -11.95517 -11.88577 -11.75308 -11.61567 -11.27736 -10.98392 -10.85996 -10.11400 -9.66365 -9.57154 -9.10959 -8.38891 -5.32722 -0.19328 -0.04401 1.40522 1.57637 1.68051 1.84375 1.89555 2.25016 2.71090 2.78470 2.87159 3.20487 3.33635 3.40873 3.49255 3.57651 3.67066 3.74670 3.86296 3.89241 3.99361 4.05720 4.15751 4.18860 4.26316 4.32985 4.58673 4.67507 4.70792 4.74645 4.75413 4.79779 4.83078 4.84810 4.90949 4.94747 4.96890 5.04965 5.06118 5.21601 5.24894 5.53725 5.60978 5.70168 6.37095 6.47004 7.08147 7.12462 7.98676 8.12219 9.11085 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.002850 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.656412 B = 9822.478407 C =10844.732610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.062 0.938 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.335 4.335 7 H 0.068 0.932 8 C -0.104 4.104 9 N -0.969 5.969 10 Si 1.130 2.870 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.294 1.294 14 N -0.593 5.593 15 C 0.076 3.924 16 C 0.529 3.471 17 O -0.592 6.592 18 C -0.166 4.166 19 H 0.162 0.838 20 C -0.127 4.127 21 C -0.090 4.090 22 H 0.095 0.905 23 C -0.096 4.096 24 C -0.054 4.054 25 C -0.144 4.144 26 C 0.119 3.881 27 F -0.134 7.134 28 C -0.189 4.189 29 C 0.115 3.885 30 F -0.144 7.144 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.358 0.642 37 H 0.238 0.762 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.175 0.825 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 -5.915 -19.097 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.081 0.919 4 C 0.021 3.979 5 N -0.396 5.396 6 C -0.466 4.466 7 H 0.086 0.914 8 C -0.295 4.295 9 N -0.616 5.616 10 Si 0.955 3.045 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.220 1.220 14 N -0.324 5.324 15 C -0.066 4.066 16 C 0.319 3.681 17 O -0.474 6.474 18 C -0.186 4.186 19 H 0.180 0.820 20 C -0.164 4.164 21 C -0.109 4.109 22 H 0.113 0.887 23 C -0.097 4.097 24 C -0.072 4.072 25 C -0.162 4.162 26 C 0.099 3.901 27 F -0.113 7.113 28 C -0.209 4.209 29 C 0.096 3.904 30 F -0.122 7.122 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.189 0.811 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.167 0.833 43 H 0.190 0.810 44 H 0.192 0.808 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.047 -5.820 -18.261 21.194 hybrid contribution -1.309 1.595 -0.576 2.142 sum -10.355 -4.225 -18.836 21.906 Atomic orbital electron populations 1.21947 0.91132 1.03786 1.03040 1.21271 0.96255 0.96160 0.83916 0.91930 1.21121 0.83791 0.97853 0.95142 1.42504 1.02495 1.70753 1.23887 1.20379 0.92740 1.32723 1.00773 0.91433 1.27245 0.94957 1.02484 1.04846 1.70995 1.37451 1.42653 1.10546 0.82602 0.74459 0.75606 0.71857 1.19812 1.20895 1.21988 1.47730 1.49780 1.13574 1.21349 1.21969 1.01997 0.79572 1.03016 1.20287 0.77298 0.86027 0.84482 1.90664 1.59310 1.19460 1.77916 1.22420 0.96797 1.03904 0.95523 0.82049 1.23190 0.91535 1.00807 1.00840 1.20708 1.03847 0.98037 0.88260 0.88668 1.19217 1.03330 0.94506 0.92688 1.21098 0.95560 0.95029 0.95513 1.21500 1.01478 1.00685 0.92537 1.17425 1.00943 0.93469 0.78243 1.91534 1.93442 1.94331 1.31988 1.21103 1.06931 0.98446 0.94393 1.17361 1.01083 0.79980 0.91994 1.91512 1.91554 1.39982 1.89187 0.91886 0.90178 0.90298 0.94347 0.95690 0.81054 0.95134 0.89511 0.90088 0.91211 0.90682 0.83287 0.81032 0.80773 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 2 C 0.13 4.43 2.80 44.99 0.13 4.55 16 3 H 0.06 2.63 6.90 -2.39 -0.02 2.61 16 4 C 0.15 6.01 5.50 86.38 0.48 6.48 16 5 N -0.75 -39.36 5.43 -343.46 -1.87 -41.23 16 6 C -0.33 -19.13 9.99 84.03 0.84 -18.29 16 7 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 8 C -0.10 -6.11 5.50 84.86 0.47 -5.65 16 9 N -0.97 -61.75 13.70 21.65 0.30 -61.46 16 10 Si 1.13 52.15 29.92 68.60 2.05 54.20 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 N -0.59 -19.17 2.24 -822.58 -1.85 -21.02 16 15 C 0.08 1.79 9.06 127.77 1.16 2.95 16 16 C 0.53 19.27 7.16 87.66 0.63 19.90 16 17 O -0.59 -27.34 15.59 -3.05 -0.05 -27.39 16 18 C -0.17 -4.43 4.43 -11.54 -0.05 -4.48 16 19 H 0.16 3.00 7.26 -2.39 -0.02 2.98 16 20 C -0.13 -3.34 9.56 30.60 0.29 -3.04 16 21 C -0.09 -2.44 5.30 -11.54 -0.06 -2.50 16 22 H 0.10 3.29 7.40 -2.38 -0.02 3.28 16 23 C -0.10 -2.03 5.62 -19.82 -0.11 -2.15 16 24 C -0.05 -0.77 9.29 22.26 0.21 -0.56 16 25 C -0.14 -1.75 10.02 22.32 0.22 -1.53 16 26 C 0.12 1.88 7.30 22.37 0.16 2.04 16 27 F -0.13 -2.23 17.27 44.97 0.78 -1.45 16 28 C -0.19 -3.43 10.01 22.36 0.22 -3.21 16 29 C 0.12 2.62 7.25 22.37 0.16 2.78 16 30 F -0.14 -4.02 16.61 44.97 0.75 -3.27 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.04 1.45 6.88 -2.39 -0.02 1.44 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.36 20.24 5.90 -92.71 -0.55 19.70 16 37 H 0.24 15.57 6.77 -92.71 -0.63 14.94 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.08 1.74 6.64 -2.39 -0.02 1.72 16 40 H 0.07 1.77 6.53 -2.39 -0.02 1.76 16 41 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.15 2.60 6.18 -2.39 -0.01 2.58 16 43 H 0.17 1.54 6.02 -2.91 -0.02 1.52 16 44 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -79.20 378.87 6.15 -73.06 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.63 Total: 33.99 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.40 Total: -5.43 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -3.41 Total: -123.70 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.52 Total: -4.72 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -79.20 6.15 -73.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.743 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds