Wall clock time and date at job start Tue Mar 31 2020 20:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00668 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99606 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46957 * 90.00190 * 9 7 5 11 11 H 1.48504 * 109.47174 * 209.99865 * 9 7 5 12 12 H 1.48499 * 109.46983 * 330.00165 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34775 * 125.64789 * 181.05585 * 17 16 15 19 19 O 1.21284 * 119.99774 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00407 * 0.04911 * 18 17 16 21 21 C 1.50701 * 109.47203 * 180.02562 * 20 18 17 22 22 C 1.38200 * 120.00094 * 99.99575 * 21 20 18 23 23 C 1.38429 * 120.00077 * 179.97438 * 22 21 20 24 24 F 1.35099 * 120.00150 * 180.02562 * 23 22 21 25 25 C 1.38479 * 119.99690 * 359.97329 * 23 22 21 26 26 C 1.38162 * 119.99795 * 0.02562 * 25 23 22 27 27 C 1.38427 * 119.99544 * 279.71866 * 21 20 18 28 28 F 1.35098 * 120.00292 * 0.02562 * 27 21 20 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 120.00544 * 180.02562 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09007 * 110.03324 * 141.64990 * 16 15 13 39 39 H 1.09007 * 109.46755 * 299.99490 * 20 18 17 40 40 H 1.08997 * 109.47498 * 59.98864 * 20 18 17 41 41 H 1.08000 * 120.00483 * 359.95813 * 22 21 20 42 42 H 1.08002 * 119.99843 * 180.02562 * 25 23 22 43 43 H 1.07998 * 119.99467 * 180.02562 * 26 25 23 44 44 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 45 45 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.7376 -0.0053 4.6429 9 14 3.0565 -2.4742 3.4251 10 1 4.4890 -2.6164 3.0607 11 1 2.8175 -3.1042 4.7485 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4216 -0.3465 -4.8833 19 8 1.3555 0.0056 -5.3420 20 6 3.5360 -0.7691 -5.8055 21 6 3.0724 -0.6625 -7.2355 22 6 3.4321 0.4320 -7.9988 23 6 3.0066 0.5296 -9.3125 24 9 3.3586 1.5993 -10.0588 25 6 2.2210 -0.4698 -9.8618 26 6 1.8615 -1.5639 -9.0986 27 6 2.2910 -1.6638 -7.7860 28 9 1.9436 -2.7361 -7.0414 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.0616 -0.4623 5.4347 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6632 -0.1029 -3.1537 39 1 4.3986 -0.1199 -5.6543 40 1 3.8152 -1.8003 -5.5894 41 1 4.0449 1.2113 -7.5704 42 1 1.8894 -0.3938 -10.8869 43 1 1.2492 -2.3435 -9.5273 44 1 0.6144 -0.2928 -2.8452 45 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271522813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:45 Heat of formation + Delta-G solvation = -88.238203 kcal Electronic energy + Delta-G solvation = -28769.548930 eV Core-core repulsion = 24423.151244 eV Total energy + Delta-G solvation = -4346.397686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.29248 -49.24384 -40.39142 -39.19721 -37.83952 -35.40785 -33.48328 -32.43727 -30.87495 -30.52475 -29.75235 -28.54753 -27.29547 -24.58691 -23.48570 -23.05255 -22.21453 -21.39867 -19.89633 -19.42305 -18.02214 -17.73324 -17.61763 -17.53997 -17.25202 -16.29903 -16.14613 -15.67096 -15.43759 -14.95168 -14.76788 -14.66088 -14.39832 -13.98772 -13.81471 -13.68601 -13.45902 -13.17004 -13.06054 -12.79570 -12.73608 -12.55286 -12.37505 -12.17629 -12.10864 -11.92917 -11.60167 -11.47589 -11.02519 -10.85898 -10.62935 -10.53908 -10.28666 -10.13173 -9.96324 -9.61552 -9.53099 -8.97383 -8.90321 -8.73012 -7.31240 -5.79859 -3.15581 0.52650 0.59566 2.46619 2.72001 3.06536 3.33567 3.36153 3.42467 3.71095 3.79873 4.01448 4.17999 4.32660 4.50890 4.55552 4.64317 4.67062 4.76668 4.83562 4.96535 5.01488 5.17906 5.24474 5.36621 5.43976 5.49626 5.55884 5.55927 5.60626 5.62915 5.68523 5.77787 5.82073 5.91830 6.07712 6.09814 6.19006 6.31465 6.35967 6.39257 6.46871 6.75938 6.98248 7.39206 7.95979 8.00031 8.38979 9.17313 9.89726 10.09495 11.38474 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.002146 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.778043 B =13043.902226 C =13211.700639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.119 4.119 16 C 0.096 3.904 17 N -0.616 5.616 18 C 0.530 3.470 19 O -0.536 6.536 20 C -0.100 4.100 21 C -0.070 4.070 22 C -0.114 4.114 23 C 0.089 3.911 24 F -0.135 7.135 25 C -0.125 4.125 26 C -0.124 4.124 27 C 0.108 3.892 28 F -0.130 7.130 29 C 0.115 3.885 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -2.893 -29.165 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.389 5.389 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.098 0.902 15 C -0.157 4.157 16 C -0.027 4.027 17 N -0.350 5.350 18 C 0.318 3.682 19 O -0.413 6.413 20 C -0.140 4.140 21 C -0.072 4.072 22 C -0.133 4.133 23 C 0.070 3.930 24 F -0.114 7.114 25 C -0.144 4.144 26 C -0.143 4.143 27 C 0.089 3.911 28 F -0.109 7.109 29 C -0.007 4.007 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.925 -2.518 -29.296 29.549 hybrid contribution 0.342 -1.373 0.216 1.431 sum 3.267 -3.891 -29.079 29.520 Atomic orbital electron populations 1.22464 0.98739 1.01007 1.00645 1.20098 0.91985 0.95434 0.84395 0.92351 1.42736 1.79856 1.09299 1.07009 1.19045 1.36813 0.95501 0.85680 0.89215 1.24666 1.01540 0.97389 0.95566 1.69693 1.52622 1.35585 1.00275 0.86574 0.78352 0.86877 0.76843 1.21118 1.21846 1.20356 1.22717 0.95200 1.00351 0.94436 0.90150 1.22617 0.96355 1.04251 0.92464 1.22214 0.86609 0.99896 0.94012 1.48537 1.15760 1.65858 1.04837 1.19924 0.88881 0.78195 0.81185 1.90736 1.27269 1.48003 1.75275 1.20608 0.98456 1.05239 0.89702 1.19152 0.98691 0.93922 0.95402 1.20867 1.01713 0.98323 0.92400 1.17575 0.99709 0.85818 0.89889 1.91524 1.90383 1.53513 1.75980 1.20989 0.98835 0.93186 1.01392 1.20964 1.01408 0.99540 0.92359 1.17474 0.98388 0.85411 0.89844 1.91525 1.90206 1.52883 1.76274 1.22296 0.92374 0.99528 0.86502 0.93562 0.92214 0.94042 0.80713 0.93072 0.89725 0.89781 0.91475 0.91302 0.87065 0.87184 0.83691 0.83678 0.83560 0.90390 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.31 37.16 0.35 -2.49 16 2 C 0.19 3.34 2.40 -67.93 -0.16 3.18 16 3 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 4 N -0.75 -16.36 4.70 -53.43 -0.25 -16.61 16 5 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 6 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 9 Si 0.88 21.35 27.74 -169.99 -4.71 16.63 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 13 C -0.11 -1.50 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.12 -1.48 6.21 -24.87 -0.15 -1.64 16 16 C 0.10 0.94 6.49 -3.04 -0.02 0.92 16 17 N -0.62 -7.42 3.33 -170.49 -0.57 -7.98 16 18 C 0.53 6.69 7.84 -10.99 -0.09 6.60 16 19 O -0.54 -8.79 16.21 5.55 0.09 -8.70 16 20 C -0.10 -0.87 4.75 -29.03 -0.14 -1.01 16 21 C -0.07 -0.67 4.42 -104.57 -0.46 -1.13 16 22 C -0.11 -0.98 9.65 -39.53 -0.38 -1.37 16 23 C 0.09 0.78 7.30 -39.42 -0.29 0.49 16 24 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 25 C -0.13 -0.92 10.02 -39.52 -0.40 -1.32 16 26 C -0.12 -0.98 10.02 -39.52 -0.40 -1.38 16 27 C 0.11 1.09 7.14 -39.43 -0.28 0.81 16 28 F -0.13 -1.48 16.66 2.25 0.04 -1.44 16 29 C 0.12 1.53 5.42 -2.53 -0.01 1.52 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.59 7.33 -51.93 -0.38 0.21 16 33 H 0.36 7.80 5.66 -40.82 -0.23 7.57 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.67 8.00 -51.92 -0.42 0.25 16 40 H 0.11 0.81 7.94 -51.93 -0.41 0.40 16 41 H 0.15 0.98 8.04 -52.49 -0.42 0.56 16 42 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 45 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -33.13 380.50 -8.28 -41.41 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.50 Total: 5.19 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.92 Total: -5.14 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.04 Total: -52.47 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.13 -8.28 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271522813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.831 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds