Wall clock time and date at job start Tue Mar 31 2020 20:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00668 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99606 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46957 * 90.00190 * 9 7 5 11 11 H 1.48504 * 109.47174 * 209.99865 * 9 7 5 12 12 H 1.48499 * 109.46983 * 330.00165 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34775 * 125.64789 * 181.05585 * 17 16 15 19 19 O 1.21284 * 119.99774 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00407 * 0.04911 * 18 17 16 21 21 C 1.50701 * 109.47203 * 180.02562 * 20 18 17 22 22 C 1.38200 * 120.00094 * 99.99575 * 21 20 18 23 23 C 1.38429 * 120.00077 * 179.97438 * 22 21 20 24 24 F 1.35099 * 120.00150 * 180.02562 * 23 22 21 25 25 C 1.38479 * 119.99690 * 359.97329 * 23 22 21 26 26 C 1.38162 * 119.99795 * 0.02562 * 25 23 22 27 27 C 1.38427 * 119.99544 * 279.71866 * 21 20 18 28 28 F 1.35098 * 120.00292 * 0.02562 * 27 21 20 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 120.00544 * 180.02562 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09007 * 110.03324 * 141.64990 * 16 15 13 39 39 H 1.09007 * 109.46755 * 299.99490 * 20 18 17 40 40 H 1.08997 * 109.47498 * 59.98864 * 20 18 17 41 41 H 1.08000 * 120.00483 * 359.95813 * 22 21 20 42 42 H 1.08002 * 119.99843 * 180.02562 * 25 23 22 43 43 H 1.07998 * 119.99467 * 180.02562 * 26 25 23 44 44 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 45 45 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.7376 -0.0053 4.6429 9 14 3.0565 -2.4742 3.4251 10 1 4.4890 -2.6164 3.0607 11 1 2.8175 -3.1042 4.7485 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4216 -0.3465 -4.8833 19 8 1.3555 0.0056 -5.3420 20 6 3.5360 -0.7691 -5.8055 21 6 3.0724 -0.6625 -7.2355 22 6 3.4321 0.4320 -7.9988 23 6 3.0066 0.5296 -9.3125 24 9 3.3586 1.5993 -10.0588 25 6 2.2210 -0.4698 -9.8618 26 6 1.8615 -1.5639 -9.0986 27 6 2.2910 -1.6638 -7.7860 28 9 1.9436 -2.7361 -7.0414 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.0616 -0.4623 5.4347 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6632 -0.1029 -3.1537 39 1 4.3986 -0.1199 -5.6543 40 1 3.8152 -1.8003 -5.5894 41 1 4.0449 1.2113 -7.5704 42 1 1.8894 -0.3938 -10.8869 43 1 1.2492 -2.3435 -9.5273 44 1 0.6144 -0.2928 -2.8452 45 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271522813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:44 Heat of formation + Delta-G solvation = -107.726258 kcal Electronic energy + Delta-G solvation = -28770.393995 eV Core-core repulsion = 24423.151244 eV Total energy + Delta-G solvation = -4347.242751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.99177 -49.95302 -41.31602 -39.94342 -38.92143 -36.89290 -34.40355 -34.00515 -32.23772 -31.19568 -31.10703 -29.52924 -28.27768 -26.07220 -24.51575 -23.99949 -22.95308 -22.70942 -21.32082 -20.30520 -19.55523 -18.67247 -18.31348 -18.25886 -18.19467 -17.43016 -16.87335 -16.63680 -16.40025 -16.18024 -15.87375 -15.42157 -15.35463 -15.17445 -15.04584 -14.67708 -14.46446 -14.29004 -14.05926 -13.97352 -13.83657 -13.69407 -13.50523 -13.44393 -12.96782 -12.90017 -12.82948 -12.81825 -12.37049 -12.07730 -12.02339 -11.89540 -11.70690 -11.66989 -11.39530 -11.08690 -10.94205 -10.16088 -9.68299 -9.56632 -9.28701 -7.97569 -5.30504 -0.11868 -0.00755 1.40804 1.44489 1.51721 1.55567 1.89281 2.37246 2.52497 3.08997 3.17340 3.31433 3.34063 3.40175 3.58610 3.66181 3.68790 3.85719 3.98169 4.07357 4.11360 4.27982 4.34280 4.38008 4.44126 4.49915 4.56173 4.65767 4.70949 4.78558 4.88487 4.91884 4.94955 4.97270 4.99754 5.03208 5.08138 5.15796 5.18542 5.31614 5.36669 5.56552 5.74764 5.82296 6.26008 6.48538 7.07125 7.12925 7.88651 8.08606 9.24120 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.002146 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.778043 B =13043.902226 C =13211.700639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.186 3.814 3 H 0.047 0.953 4 N -0.745 5.745 5 C -0.221 4.221 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.304 1.304 12 H -0.252 1.252 13 C -0.098 4.098 14 H 0.084 0.916 15 C -0.120 4.120 16 C 0.100 3.900 17 N -0.616 5.616 18 C 0.526 3.474 19 O -0.581 6.581 20 C -0.094 4.094 21 C -0.083 4.083 22 C -0.118 4.118 23 C 0.076 3.924 24 F -0.141 7.141 25 C -0.120 4.120 26 C -0.125 4.125 27 C 0.084 3.916 28 F -0.143 7.143 29 C 0.120 3.880 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.366 0.634 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.167 0.833 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -4.547 -31.855 32.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 H 0.065 0.935 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.231 1.231 12 H -0.177 1.177 13 C -0.117 4.117 14 H 0.103 0.897 15 C -0.158 4.158 16 C -0.022 4.022 17 N -0.350 5.350 18 C 0.316 3.684 19 O -0.462 6.462 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.137 4.137 23 C 0.057 3.943 24 F -0.119 7.119 25 C -0.139 4.139 26 C -0.143 4.143 27 C 0.065 3.935 28 F -0.122 7.122 29 C -0.004 4.004 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.185 0.815 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.086 -4.181 -32.045 32.574 hybrid contribution -0.090 -0.727 0.985 1.228 sum 3.996 -4.908 -31.060 31.698 Atomic orbital electron populations 1.22357 0.98023 1.01218 1.00586 1.20256 0.92355 0.95070 0.84494 0.93458 1.42686 1.79968 1.09465 1.06747 1.18968 1.34555 0.94243 0.87399 0.92759 1.25486 1.02684 1.02496 0.95168 1.69887 1.54955 1.37750 1.01216 0.85421 0.78843 0.80797 0.76758 1.19909 1.23106 1.17667 1.22498 0.96629 0.99916 0.92706 0.89724 1.22604 0.94710 1.03724 0.94739 1.22327 0.86186 1.02066 0.91573 1.48599 1.16095 1.65524 1.04735 1.20612 0.89216 0.77206 0.81372 1.90714 1.29340 1.50102 1.76001 1.20671 0.97693 1.06790 0.88125 1.19303 0.99066 0.94096 0.95982 1.21072 1.01755 0.98416 0.92445 1.17808 1.00265 0.86069 0.90165 1.91511 1.90506 1.53827 1.76097 1.21281 0.97821 0.92334 1.02449 1.21238 1.01172 1.00167 0.91733 1.17843 0.99383 0.85576 0.90722 1.91486 1.90478 1.53499 1.76699 1.22111 0.92508 0.99200 0.86550 0.93172 0.94853 0.91517 0.80107 0.93558 0.90907 0.89600 0.89069 0.88594 0.83927 0.85529 0.82143 0.81215 0.81538 0.91381 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.38 9.31 71.98 0.67 -4.71 16 2 C 0.19 6.43 2.40 44.99 0.11 6.54 16 3 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 4 N -0.75 -32.14 4.70 -322.94 -1.52 -33.66 16 5 C -0.22 -12.03 10.41 84.03 0.87 -11.15 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 8 N -0.99 -62.37 13.97 21.65 0.30 -62.06 16 9 Si 0.95 43.87 27.74 68.60 1.90 45.78 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 13 C -0.10 -2.56 2.63 -9.40 -0.02 -2.59 16 14 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.12 -2.68 6.21 31.80 0.20 -2.48 16 16 C 0.10 1.59 6.49 86.74 0.56 2.15 16 17 N -0.62 -13.29 3.33 -811.69 -2.70 -15.99 16 18 C 0.53 12.17 7.84 87.66 0.69 12.86 16 19 O -0.58 -18.60 16.21 -3.04 -0.05 -18.65 16 20 C -0.09 -1.35 4.75 29.10 0.14 -1.21 16 21 C -0.08 -1.43 4.42 -19.83 -0.09 -1.51 16 22 C -0.12 -1.81 9.65 22.31 0.22 -1.60 16 23 C 0.08 1.19 7.30 22.37 0.16 1.36 16 24 F -0.14 -2.39 17.27 44.97 0.78 -1.61 16 25 C -0.12 -1.53 10.02 22.31 0.22 -1.30 16 26 C -0.12 -1.75 10.02 22.31 0.22 -1.53 16 27 C 0.08 1.57 7.14 22.37 0.16 1.73 16 28 F -0.14 -3.08 16.66 44.97 0.75 -2.34 16 29 C 0.12 2.99 5.42 86.86 0.47 3.46 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.86 7.33 -2.39 -0.02 1.84 16 33 H 0.37 15.04 5.66 -92.71 -0.52 14.52 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.07 1.81 8.03 -2.39 -0.02 1.79 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.14 1.11 8.00 -2.38 -0.02 1.09 16 40 H 0.13 1.42 7.94 -2.39 -0.02 1.40 16 41 H 0.16 1.81 8.04 -2.91 -0.02 1.78 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 45 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -74.30 380.50 4.94 -69.36 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.42 Total: 22.55 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.05 Total: -3.38 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.92 Total: -111.71 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 1.53 Total: -3.95 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Total: -74.30 4.94 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271522813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.367 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds